Wall clock time and date at job start Tue Mar 31 2020 13:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31757 * 1 3 3 O 1.35643 * 120.00032 * 2 1 4 4 C 1.35922 * 117.99981 * 174.97329 * 3 2 1 5 5 C 1.38782 * 119.98341 * 184.96037 * 4 3 2 6 6 C 1.38036 * 120.01829 * 179.72767 * 5 4 3 7 7 C 1.38926 * 119.98303 * 0.57092 * 6 5 4 8 8 N 1.39849 * 120.02017 * 179.68375 * 7 6 5 9 9 C 1.34774 * 119.99992 * 35.13910 * 8 7 6 10 10 O 1.21385 * 120.00315 * 355.46271 * 9 8 7 11 11 C 1.49334 * 120.00058 * 175.45840 * 9 8 7 12 12 O 1.21365 * 120.00166 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00059 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00171 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47470 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.46837 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00689 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99825 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46837 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47419 * 119.99122 * 21 19 17 24 24 H 1.48501 * 109.46792 * 239.99790 * 21 19 17 25 25 C 1.38932 * 119.96725 * 359.70039 * 7 6 5 26 26 C 1.38049 * 119.97884 * 0.02562 * 25 7 6 27 27 H 1.07996 * 120.00101 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00102 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99949 * 179.97438 * 2 1 3 30 30 H 1.07999 * 119.99004 * 359.97438 * 5 4 3 31 31 H 1.08008 * 120.01041 * 180.27191 * 6 5 4 32 32 H 0.97003 * 120.00198 * 215.14345 * 8 7 6 33 33 H 0.96999 * 119.99872 * 359.97438 * 13 11 9 34 34 H 1.09000 * 109.46966 * 299.99694 * 14 13 11 35 35 H 1.09007 * 109.47321 * 59.99184 * 14 13 11 36 36 H 1.09007 * 109.46727 * 299.99665 * 15 14 13 37 37 H 1.08993 * 109.47127 * 59.99513 * 15 14 13 38 38 H 1.09000 * 109.46616 * 300.00088 * 16 15 14 39 39 H 1.09002 * 109.47178 * 59.99938 * 16 15 14 40 40 H 0.97001 * 120.00064 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.01479 * 179.97438 * 25 7 6 42 42 H 1.07995 * 119.98973 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3502 1.1296 0.1052 5 6 4.0771 2.3068 0.2131 6 6 5.4521 2.2616 0.3256 7 6 6.1094 1.0377 0.3188 8 7 7.5030 0.9913 0.4260 9 6 8.1500 1.8898 1.1944 10 8 7.5328 2.7891 1.7272 11 6 9.6263 1.7792 1.3904 12 8 10.2435 0.8804 0.8574 13 7 10.2732 2.6775 2.1591 14 6 11.7215 2.5693 2.3509 15 6 12.2021 3.7036 3.2582 16 6 13.7146 3.5902 3.4591 17 6 14.1877 4.7072 4.3532 18 1 13.4805 5.4263 4.7393 19 6 15.5237 4.8117 4.6776 20 7 16.3851 3.9363 4.2071 21 14 16.1102 6.1958 5.7865 22 1 14.9528 7.0393 6.1794 23 1 16.7407 5.6224 7.0026 24 1 17.1030 7.0262 5.0587 25 6 5.3815 -0.1403 0.2050 26 6 4.0059 -0.0936 0.0983 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8576 -0.9353 0.0004 30 1 3.5664 3.2585 0.2131 31 1 6.0173 3.1777 0.4140 32 1 8.0039 0.3124 -0.0526 33 1 9.7800 3.3960 2.5848 34 1 11.9562 1.6101 2.8125 35 1 12.2223 2.6399 1.3852 36 1 11.9674 4.6626 2.7961 37 1 11.7014 3.6334 4.2238 38 1 13.9488 2.6312 3.9212 39 1 14.2156 3.6602 2.4935 40 1 17.3249 4.0096 4.4356 41 1 5.8917 -1.0921 0.1993 42 1 3.4400 -1.0091 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839479662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:53 Heat of formation + Delta-G solvation = -54.476929 kcal Electronic energy + Delta-G solvation = -24314.446214 eV Core-core repulsion = 20453.905191 eV Total energy + Delta-G solvation = -3860.541022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40896 -40.71799 -39.18002 -37.91463 -35.88911 -34.89173 -33.37446 -32.48399 -31.47143 -31.29581 -29.35636 -27.26419 -25.13808 -24.17137 -23.14035 -22.35703 -21.21570 -20.80136 -20.07581 -19.28017 -18.77762 -17.69481 -16.55444 -16.49356 -16.37170 -16.08961 -15.85527 -15.32115 -15.19993 -14.81896 -14.47754 -14.35414 -14.15443 -13.94843 -13.77156 -13.55645 -13.16857 -12.86470 -12.35225 -12.32939 -11.93509 -11.86304 -11.75514 -11.34291 -10.95419 -10.81400 -10.75088 -10.60282 -9.95102 -9.90634 -9.63021 -9.48997 -9.41669 -9.15499 -9.08644 -8.40866 -8.15130 -6.05441 -4.08500 0.60809 0.85871 1.31277 1.85235 2.12735 2.64487 3.00980 3.28484 3.34075 3.36234 3.39796 3.47340 4.08463 4.27955 4.33640 4.42489 4.50477 4.76471 4.90541 5.08107 5.22518 5.30806 5.37813 5.50832 5.52166 5.62967 5.63499 5.80197 5.82033 5.93488 5.97430 6.02011 6.15873 6.39351 6.48709 6.61174 6.75456 6.90506 7.13908 7.24505 7.52983 7.58575 7.69542 7.89542 7.93134 8.33812 8.98196 9.56190 11.05825 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.001662 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.356979 B =16842.929202 C =17367.727231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 O -0.253 6.253 4 C 0.103 3.897 5 C -0.122 4.122 6 C -0.080 4.080 7 C 0.113 3.887 8 N -0.645 5.645 9 C 0.509 3.491 10 O -0.501 6.501 11 C 0.503 3.497 12 O -0.523 6.523 13 N -0.688 5.688 14 C 0.113 3.887 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.099 4.099 26 C -0.183 4.183 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.424 0.576 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.135 0.865 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.684 -9.688 -10.683 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.047 4.047 3 O -0.163 6.163 4 C 0.059 3.941 5 C -0.141 4.141 6 C -0.100 4.100 7 C 0.019 3.981 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.374 6.374 11 C 0.282 3.718 12 O -0.400 6.400 13 N -0.339 5.339 14 C -0.009 4.009 15 C -0.161 4.161 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.119 4.119 26 C -0.202 4.202 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.262 0.738 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.498 -9.530 -10.652 31.881 hybrid contribution 0.497 0.433 0.594 0.887 sum -28.001 -9.097 -10.058 31.112 Atomic orbital electron populations 1.23587 0.93314 1.03570 1.07024 1.22581 0.93444 0.87866 1.00793 1.84369 1.17047 1.31331 1.83523 1.19045 0.81244 0.94527 0.99309 1.20369 0.92927 0.96850 1.03913 1.21182 0.93401 0.97911 0.97484 1.17702 0.82348 0.94108 1.03897 1.43107 1.05218 1.33969 1.46975 1.20541 0.89115 0.82232 0.78937 1.90767 1.68094 1.31897 1.46671 1.19738 0.87124 0.83633 0.81277 1.90785 1.67899 1.33270 1.47999 1.46074 1.10617 1.29472 1.47783 1.21891 0.76334 1.01371 1.01278 1.21938 1.01137 0.95564 0.97469 1.19040 0.87320 0.97634 0.97380 1.21235 0.93033 1.12028 1.29828 0.92500 1.25023 0.96944 0.96214 0.96231 1.69971 1.02752 1.35626 1.44915 0.86520 0.78776 0.82146 0.80463 1.19717 1.20987 1.20989 1.20738 0.93140 0.97123 1.00890 1.20996 0.94759 0.97160 1.07251 0.87490 0.85466 0.85247 0.84327 0.83150 0.73784 0.75196 0.90941 0.90923 0.92365 0.92376 0.96169 0.96161 0.92959 0.84712 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -1.31 14.63 28.85 0.42 -0.89 16 2 C 0.01 0.09 10.00 28.85 0.29 0.38 16 3 O -0.25 -2.27 10.01 -2.89 -0.03 -2.30 16 4 C 0.10 0.91 6.66 -39.18 -0.26 0.65 16 5 C -0.12 -1.11 9.98 -39.45 -0.39 -1.50 16 6 C -0.08 -0.80 8.69 -39.40 -0.34 -1.14 16 7 C 0.11 1.08 6.30 -83.69 -0.53 0.55 16 8 N -0.65 -6.29 5.32 -10.27 -0.05 -6.35 16 9 C 0.51 6.18 7.73 -11.64 -0.09 6.09 16 10 O -0.50 -6.78 13.91 5.47 0.08 -6.70 16 11 C 0.50 6.96 7.89 -11.64 -0.09 6.86 16 12 O -0.52 -8.27 16.48 5.48 0.09 -8.18 16 13 N -0.69 -9.63 5.55 -60.77 -0.34 -9.97 16 14 C 0.11 1.85 5.67 -4.04 -0.02 1.83 16 15 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.10 -0.75 9.96 -39.39 -0.39 -1.14 16 26 C -0.18 -1.34 9.19 -39.45 -0.36 -1.70 16 27 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 28 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 29 H 0.13 0.54 5.57 -52.49 -0.29 0.25 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.15 1.61 6.22 -52.48 -0.33 1.28 16 32 H 0.42 3.42 8.30 -40.82 -0.34 3.08 16 33 H 0.41 5.20 7.94 -40.82 -0.32 4.88 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.65 5.71 -52.49 -0.30 0.35 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -32.19 367.80 -6.81 -39.00 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.35 Total: 3.53 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.46 Total: -5.19 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.34 Total: -41.97 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.14 Total: -17.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.19 -6.81 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839479662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.479 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds