Wall clock time and date at job start Tue Mar 31 2020 13:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31757 * 1 3 3 O 1.35643 * 120.00032 * 2 1 4 4 C 1.35922 * 117.99981 * 174.97329 * 3 2 1 5 5 C 1.38782 * 119.98341 * 184.96037 * 4 3 2 6 6 C 1.38036 * 120.01829 * 179.72767 * 5 4 3 7 7 C 1.38926 * 119.98303 * 0.57092 * 6 5 4 8 8 N 1.39849 * 120.02017 * 179.68375 * 7 6 5 9 9 C 1.34774 * 119.99992 * 35.13910 * 8 7 6 10 10 O 1.21385 * 120.00315 * 355.46271 * 9 8 7 11 11 C 1.49334 * 120.00058 * 175.45840 * 9 8 7 12 12 O 1.21365 * 120.00166 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00059 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00171 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47470 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.46837 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00689 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99825 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46837 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47419 * 119.99122 * 21 19 17 24 24 H 1.48501 * 109.46792 * 239.99790 * 21 19 17 25 25 C 1.38932 * 119.96725 * 359.70039 * 7 6 5 26 26 C 1.38049 * 119.97884 * 0.02562 * 25 7 6 27 27 H 1.07996 * 120.00101 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00102 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99949 * 179.97438 * 2 1 3 30 30 H 1.07999 * 119.99004 * 359.97438 * 5 4 3 31 31 H 1.08008 * 120.01041 * 180.27191 * 6 5 4 32 32 H 0.97003 * 120.00198 * 215.14345 * 8 7 6 33 33 H 0.96999 * 119.99872 * 359.97438 * 13 11 9 34 34 H 1.09000 * 109.46966 * 299.99694 * 14 13 11 35 35 H 1.09007 * 109.47321 * 59.99184 * 14 13 11 36 36 H 1.09007 * 109.46727 * 299.99665 * 15 14 13 37 37 H 1.08993 * 109.47127 * 59.99513 * 15 14 13 38 38 H 1.09000 * 109.46616 * 300.00088 * 16 15 14 39 39 H 1.09002 * 109.47178 * 59.99938 * 16 15 14 40 40 H 0.97001 * 120.00064 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.01479 * 179.97438 * 25 7 6 42 42 H 1.07995 * 119.98973 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3502 1.1296 0.1052 5 6 4.0771 2.3068 0.2131 6 6 5.4521 2.2616 0.3256 7 6 6.1094 1.0377 0.3188 8 7 7.5030 0.9913 0.4260 9 6 8.1500 1.8898 1.1944 10 8 7.5328 2.7891 1.7272 11 6 9.6263 1.7792 1.3904 12 8 10.2435 0.8804 0.8574 13 7 10.2732 2.6775 2.1591 14 6 11.7215 2.5693 2.3509 15 6 12.2021 3.7036 3.2582 16 6 13.7146 3.5902 3.4591 17 6 14.1877 4.7072 4.3532 18 1 13.4805 5.4263 4.7393 19 6 15.5237 4.8117 4.6776 20 7 16.3851 3.9363 4.2071 21 14 16.1102 6.1958 5.7865 22 1 14.9528 7.0393 6.1794 23 1 16.7407 5.6224 7.0026 24 1 17.1030 7.0262 5.0587 25 6 5.3815 -0.1403 0.2050 26 6 4.0059 -0.0936 0.0983 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8576 -0.9353 0.0004 30 1 3.5664 3.2585 0.2131 31 1 6.0173 3.1777 0.4140 32 1 8.0039 0.3124 -0.0526 33 1 9.7800 3.3960 2.5848 34 1 11.9562 1.6101 2.8125 35 1 12.2223 2.6399 1.3852 36 1 11.9674 4.6626 2.7961 37 1 11.7014 3.6334 4.2238 38 1 13.9488 2.6312 3.9212 39 1 14.2156 3.6602 2.4935 40 1 17.3249 4.0096 4.4356 41 1 5.8917 -1.0921 0.1993 42 1 3.4400 -1.0091 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839479662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:52 Heat of formation + Delta-G solvation = -75.903906 kcal Electronic energy + Delta-G solvation = -24315.375357 eV Core-core repulsion = 20453.905191 eV Total energy + Delta-G solvation = -3861.470166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25088 -41.46302 -40.16265 -38.71817 -37.21988 -35.87091 -35.14034 -33.06932 -32.98168 -32.07351 -30.10874 -28.89259 -26.40085 -24.96904 -24.40058 -23.22137 -22.37774 -21.96190 -21.01043 -19.84929 -19.79770 -18.67258 -18.33837 -17.57466 -17.34486 -16.94088 -16.61367 -16.45289 -16.29418 -16.24264 -15.66858 -15.26962 -15.09125 -14.85071 -14.54393 -14.29843 -14.22764 -13.83201 -13.77324 -13.60520 -13.48226 -12.93179 -12.78732 -12.74921 -12.54376 -12.37392 -11.92584 -11.70295 -11.57887 -11.43726 -11.21468 -10.77571 -10.55066 -10.33503 -10.17770 -10.09421 -8.80457 -8.19459 -6.30064 -0.17242 0.23360 0.41377 1.13629 1.38836 1.41737 1.42653 1.55257 1.98331 2.10625 2.41091 2.50999 2.67356 3.14822 3.27073 3.63687 3.73516 3.97760 4.07599 4.15143 4.18619 4.28947 4.44667 4.52821 4.64139 4.84795 4.91979 4.92309 4.95686 5.09578 5.12505 5.15947 5.20842 5.22317 5.26750 5.49324 5.52317 5.70179 5.71420 5.84876 5.85075 6.21365 6.25558 6.58066 6.63416 6.80778 6.87234 7.39473 8.92541 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.001662 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.356979 B =16842.929202 C =17367.727231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 O -0.271 6.271 4 C 0.097 3.903 5 C -0.134 4.134 6 C -0.092 4.092 7 C 0.093 3.907 8 N -0.630 5.630 9 C 0.515 3.485 10 O -0.518 6.518 11 C 0.507 3.493 12 O -0.543 6.543 13 N -0.683 5.683 14 C 0.127 3.873 15 C -0.107 4.107 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.090 4.090 26 C -0.179 4.179 27 H 0.098 0.902 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.432 0.568 33 H 0.420 0.580 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.263 0.737 41 H 0.162 0.838 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.542 -10.342 -10.540 33.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.069 4.069 3 O -0.182 6.182 4 C 0.053 3.947 5 C -0.153 4.153 6 C -0.112 4.112 7 C 0.000 4.000 8 N -0.277 5.277 9 C 0.297 3.703 10 O -0.393 6.393 11 C 0.287 3.713 12 O -0.421 6.421 13 N -0.336 5.336 14 C 0.004 3.996 15 C -0.145 4.145 16 C -0.014 4.014 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.789 3.211 22 H -0.185 1.185 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.110 4.110 26 C -0.197 4.197 27 H 0.116 0.884 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.272 0.728 33 H 0.258 0.742 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.072 0.928 41 H 0.180 0.820 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -30.400 -10.193 -10.525 33.747 hybrid contribution 0.934 0.572 0.494 1.201 sum -29.466 -9.621 -10.031 32.580 Atomic orbital electron populations 1.23891 0.93215 1.04379 1.05372 1.23018 0.93907 0.88035 1.01918 1.84348 1.17090 1.32991 1.83776 1.19207 0.81527 0.94987 0.98977 1.20451 0.92790 0.97626 1.04459 1.21123 0.93780 0.97855 0.98431 1.17879 0.81991 0.94790 1.05388 1.42975 1.05553 1.33262 1.45947 1.20106 0.88063 0.82668 0.79443 1.90773 1.68009 1.32735 1.47759 1.19988 0.87907 0.82912 0.80470 1.90776 1.68586 1.34021 1.48702 1.45866 1.09593 1.30003 1.48099 1.21508 0.77774 1.00000 1.00312 1.21647 0.97146 0.96991 0.98676 1.18943 0.91158 0.95801 0.95475 1.21715 0.93527 1.12717 1.30028 0.91804 1.25954 0.97263 0.98791 0.97790 1.70099 1.03142 1.37610 1.46435 0.85414 0.78438 0.78954 0.78322 1.18484 1.20572 1.20576 1.21028 0.93262 0.97426 0.99240 1.21325 0.94787 0.97698 1.05903 0.88386 0.82995 0.82807 0.83928 0.84462 0.72778 0.74216 0.91525 0.91485 0.91414 0.91461 0.98455 0.98441 0.92814 0.82034 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.10 14.63 67.09 0.98 -1.12 16 2 C -0.01 -0.10 10.00 67.09 0.67 0.57 16 3 O -0.27 -4.58 10.01 -33.27 -0.33 -4.92 16 4 C 0.10 1.60 6.66 22.53 0.15 1.75 16 5 C -0.13 -2.44 9.98 22.35 0.22 -2.21 16 6 C -0.09 -1.83 8.69 22.39 0.19 -1.64 16 7 C 0.09 1.66 6.30 38.19 0.24 1.90 16 8 N -0.63 -11.59 5.32 -304.75 -1.62 -13.21 16 9 C 0.52 12.16 7.73 87.23 0.67 12.83 16 10 O -0.52 -13.84 13.91 -3.36 -0.05 -13.89 16 11 C 0.51 13.70 7.89 87.23 0.69 14.38 16 12 O -0.54 -16.86 16.48 -3.29 -0.05 -16.91 16 13 N -0.68 -18.67 5.55 -464.52 -2.58 -21.25 16 14 C 0.13 4.13 5.67 86.38 0.49 4.62 16 15 C -0.11 -3.98 5.27 30.60 0.16 -3.82 16 16 C 0.02 1.20 4.97 29.85 0.15 1.35 16 17 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 21 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.09 -1.14 9.96 22.39 0.22 -0.92 16 26 C -0.18 -2.16 9.19 22.36 0.21 -1.96 16 27 H 0.10 1.05 8.06 -2.91 -0.02 1.02 16 28 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 29 H 0.16 0.79 5.57 -2.91 -0.02 0.78 16 30 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.14 3.04 6.22 -2.91 -0.02 3.02 16 32 H 0.43 6.36 8.30 -92.71 -0.77 5.59 16 33 H 0.42 10.21 7.94 -92.71 -0.74 9.47 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.17 0.95 5.71 -2.91 -0.02 0.93 16 Total: -1.00 -69.56 367.80 2.98 -66.57 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.44 Total: 17.14 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.75 Total: -3.44 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.91 Total: -90.15 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.43 Total: -35.72 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.56 2.98 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839479662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.332 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds