Wall clock time and date at job start Tue Mar 31 2020 12:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31749 * 1 3 3 O 1.35646 * 119.99931 * 2 1 4 4 C 1.35921 * 118.00066 * 186.18096 * 3 2 1 5 5 C 1.38787 * 119.98487 * 6.18265 * 4 3 2 6 6 C 1.38041 * 120.01955 * 180.02562 * 5 4 3 7 7 C 1.38930 * 119.98274 * 0.02562 * 6 5 4 8 8 N 1.39842 * 120.01764 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00101 * 35.51615 * 8 7 6 10 10 O 1.21389 * 120.00113 * 355.87685 * 9 8 7 11 11 C 1.49331 * 119.99989 * 175.88112 * 9 8 7 12 12 O 1.21365 * 120.00237 * 5.97827 * 11 9 8 13 13 N 1.34779 * 119.99820 * 185.97754 * 11 9 8 14 14 C 1.46497 * 120.00258 * 5.20244 * 13 11 9 15 15 C 1.46508 * 119.99646 * 185.19809 * 13 11 9 16 16 H 1.09000 * 109.47316 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46952 * 120.00648 * 15 13 11 18 18 C 1.50703 * 109.46888 * 240.00144 * 15 13 11 19 19 H 1.07998 * 120.00097 * 0.02562 * 18 15 13 20 20 C 1.37869 * 119.99772 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00369 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 120.00086 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47104 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.46712 * 299.99633 * 22 20 18 25 25 H 1.48501 * 109.47022 * 59.99372 * 22 20 18 26 26 C 1.38928 * 119.96285 * 0.27412 * 7 6 5 27 27 C 1.38041 * 119.98303 * 359.44786 * 26 7 6 28 28 H 1.08004 * 119.99590 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00702 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00702 * 180.02562 * 2 1 3 31 31 H 1.08002 * 119.98831 * 359.97438 * 5 4 3 32 32 H 1.07995 * 120.00697 * 179.97438 * 6 5 4 33 33 H 0.97008 * 120.00116 * 215.51507 * 8 7 6 34 34 H 1.09002 * 109.46592 * 275.92570 * 14 13 11 35 35 H 1.09001 * 109.47205 * 35.91896 * 14 13 11 36 36 H 1.08997 * 109.47475 * 155.92181 * 14 13 11 37 37 H 1.08993 * 109.47368 * 59.99548 * 17 15 13 38 38 H 1.09001 * 109.47105 * 179.97438 * 17 15 13 39 39 H 1.09005 * 109.46544 * 299.99673 * 17 15 13 40 40 H 0.97000 * 119.99793 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.00630 * 179.70118 * 26 7 6 42 42 H 1.08004 * 119.98961 * 180.27430 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9957 1.1747 0.0000 4 6 3.3481 1.1308 -0.1292 5 6 3.9816 -0.0774 -0.3843 6 6 5.3550 -0.1229 -0.5151 7 6 6.1032 1.0411 -0.3909 8 7 7.4946 0.9959 -0.5238 9 6 8.0602 0.1469 -1.4046 10 8 7.3677 -0.6309 -2.0282 11 6 9.5388 0.1631 -1.6132 12 8 10.2427 0.8621 -0.9140 13 7 10.0916 -0.5987 -2.5779 14 6 9.2352 -1.3542 -3.4954 15 6 11.5490 -0.6711 -2.7090 16 1 12.0139 -0.0473 -1.9455 17 6 12.0056 -2.1205 -2.5318 18 6 11.9555 -0.1797 -4.0744 19 1 11.2036 0.1535 -4.7743 20 6 13.2873 -0.1556 -4.4300 21 7 14.2031 -0.5610 -3.5775 22 14 13.7914 0.4541 -6.1223 23 1 15.2686 0.3806 -6.2552 24 1 13.1575 -0.3944 -7.1631 25 1 13.3487 1.8612 -6.2936 26 6 5.4689 2.2491 -0.1294 27 6 4.0949 2.2939 -0.0045 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9352 0.0004 30 1 1.8576 -0.9352 -0.0004 31 1 3.3999 -0.9824 -0.4796 32 1 5.8478 -1.0632 -0.7132 33 1 8.0527 1.5757 0.0179 34 1 8.9547 -2.3011 -3.0339 35 1 8.3371 -0.7762 -3.7134 36 1 9.7764 -1.5477 -4.4215 37 1 11.5407 -2.7439 -3.2955 38 1 13.0898 -2.1745 -2.6297 39 1 11.7115 -2.4759 -1.5441 40 1 15.1401 -0.5436 -3.8276 41 1 6.0503 3.1536 -0.0278 42 1 3.6012 3.2337 0.1944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839529094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:06 Heat of formation + Delta-G solvation = -28.996066 kcal Electronic energy + Delta-G solvation = -25811.794038 eV Core-core repulsion = 21952.357949 eV Total energy + Delta-G solvation = -3859.436089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13410 -40.43734 -38.76616 -37.55515 -35.84326 -34.52449 -32.81111 -32.31089 -31.26217 -29.62393 -28.97664 -26.31244 -25.33710 -24.76458 -23.91569 -22.67989 -20.92111 -20.73800 -19.30016 -19.05969 -17.74116 -17.22262 -16.46719 -16.28566 -15.96973 -15.70402 -15.48415 -15.05485 -15.00608 -14.42326 -14.30538 -13.92278 -13.83650 -13.39849 -13.21043 -12.83505 -12.69706 -12.51566 -12.41051 -12.22175 -11.74941 -11.67782 -11.15660 -11.09438 -10.90666 -10.85699 -10.81897 -10.45684 -10.33647 -10.23375 -9.40836 -9.31066 -9.27906 -8.88125 -8.50223 -7.94984 -7.77842 -6.15007 -4.23559 0.84956 1.08306 1.76929 2.04220 2.61432 2.81630 3.25201 3.30116 3.32356 3.44442 3.68405 3.96502 4.28580 4.34129 4.55499 4.67112 4.75180 4.97148 5.09504 5.16705 5.23395 5.42316 5.52061 5.70974 5.87320 5.94647 5.97886 6.08038 6.14212 6.17303 6.19049 6.49499 6.60703 6.67469 6.71715 6.91879 7.05628 7.22906 7.30244 7.34726 7.61397 7.79853 7.94038 8.05388 8.29420 8.54669 8.81047 9.42631 10.90389 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.002410 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.401557 B =11617.484057 C =11712.454958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 O -0.254 6.254 4 C 0.096 3.904 5 C -0.180 4.180 6 C -0.081 4.081 7 C 0.122 3.878 8 N -0.651 5.651 9 C 0.508 3.492 10 O -0.502 6.502 11 C 0.493 3.507 12 O -0.535 6.535 13 N -0.552 5.552 14 C 0.082 3.918 15 C 0.255 3.745 16 H 0.067 0.933 17 C -0.147 4.147 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.104 4.104 27 C -0.121 4.121 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.423 0.577 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.013 0.987 40 H 0.265 0.735 41 H 0.139 0.861 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.067 0.852 7.407 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.043 4.043 3 O -0.164 6.164 4 C 0.052 3.948 5 C -0.199 4.199 6 C -0.101 4.101 7 C 0.027 3.973 8 N -0.298 5.298 9 C 0.292 3.708 10 O -0.376 6.376 11 C 0.274 3.726 12 O -0.414 6.414 13 N -0.282 5.282 14 C -0.061 4.061 15 C 0.156 3.844 16 H 0.084 0.916 17 C -0.205 4.205 18 C -0.568 4.568 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.124 4.124 27 C -0.140 4.140 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.964 0.779 7.295 22.211 hybrid contribution 0.564 0.324 -0.753 0.994 sum -20.401 1.103 6.543 21.452 Atomic orbital electron populations 1.23552 0.93299 1.03444 1.07603 1.22586 0.93434 0.87943 1.00337 1.84337 1.17322 1.31276 1.83496 1.19007 0.81180 0.94785 0.99819 1.21123 0.95318 0.97268 1.06211 1.21132 0.92818 0.98456 0.97670 1.17748 0.82931 0.93864 1.02720 1.43235 1.05029 1.41423 1.40129 1.20951 0.90336 0.80504 0.79030 1.90696 1.64264 1.37080 1.45543 1.19596 0.86815 0.82840 0.83377 1.90729 1.62396 1.40816 1.47431 1.48273 1.10128 1.41967 1.27825 1.21936 0.94269 0.95794 0.94089 1.19180 0.71735 0.94828 0.98699 0.91558 1.22103 1.04934 0.96850 0.96647 1.21224 0.92551 1.43970 0.99006 0.92044 1.24888 0.96237 0.94930 0.97625 1.69861 1.01153 1.46424 1.35000 0.86496 0.77403 0.79439 0.83727 1.21107 1.20124 1.20174 1.20790 0.93625 0.96497 1.01534 1.20179 0.92394 0.96923 1.04553 0.85548 0.87591 0.85270 0.84785 0.83629 0.73883 0.93170 0.90831 0.90331 0.94771 0.88448 0.96836 0.92476 0.84348 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -1.69 14.63 28.85 0.42 -1.27 16 2 C 0.02 0.15 9.94 28.85 0.29 0.43 16 3 O -0.25 -2.68 10.01 -2.90 -0.03 -2.71 16 4 C 0.10 1.03 6.66 -39.18 -0.26 0.77 16 5 C -0.18 -1.91 9.15 -39.45 -0.36 -2.27 16 6 C -0.08 -0.99 8.68 -39.40 -0.34 -1.34 16 7 C 0.12 1.50 6.29 -83.69 -0.53 0.97 16 8 N -0.65 -8.82 5.33 -10.27 -0.05 -8.87 16 9 C 0.51 8.49 7.54 -11.64 -0.09 8.40 16 10 O -0.50 -8.59 10.85 5.46 0.06 -8.53 16 11 C 0.49 10.02 7.72 -11.64 -0.09 9.93 16 12 O -0.53 -12.02 15.83 5.48 0.09 -11.93 16 13 N -0.55 -11.87 2.75 -175.81 -0.48 -12.35 16 14 C 0.08 1.52 8.16 59.85 0.49 2.01 16 15 C 0.25 6.36 2.62 -69.08 -0.18 6.17 16 16 H 0.07 1.87 6.91 -51.93 -0.36 1.52 16 17 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 18 C -0.53 -14.00 7.95 -34.44 -0.27 -14.27 16 19 H 0.06 1.61 7.44 -52.49 -0.39 1.22 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.10 -1.06 9.96 -39.40 -0.39 -1.45 16 27 C -0.12 -1.20 9.98 -39.45 -0.39 -1.59 16 28 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 29 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.13 0.84 5.69 -52.49 -0.30 0.54 16 31 H 0.13 1.12 5.80 -52.49 -0.30 0.82 16 32 H 0.15 1.93 6.27 -52.49 -0.33 1.60 16 33 H 0.42 5.12 8.30 -40.82 -0.34 4.78 16 34 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.07 1.30 5.99 -51.93 -0.31 0.98 16 36 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 37 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 38 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -30.07 354.54 -6.03 -36.10 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.08 Total: 6.01 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.47 Total: 5.06 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.09 Total: -45.00 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.12 Total: -23.17 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.07 -6.03 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839529094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds