Wall clock time and date at job start Tue Mar 31 2020 12:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31749 * 1 3 3 O 1.35646 * 119.99931 * 2 1 4 4 C 1.35921 * 118.00066 * 186.18096 * 3 2 1 5 5 C 1.38787 * 119.98487 * 6.18265 * 4 3 2 6 6 C 1.38041 * 120.01955 * 180.02562 * 5 4 3 7 7 C 1.38930 * 119.98274 * 0.02562 * 6 5 4 8 8 N 1.39842 * 120.01764 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00101 * 35.51615 * 8 7 6 10 10 O 1.21389 * 120.00113 * 355.87685 * 9 8 7 11 11 C 1.49331 * 119.99989 * 175.88112 * 9 8 7 12 12 O 1.21365 * 120.00237 * 5.97827 * 11 9 8 13 13 N 1.34779 * 119.99820 * 185.97754 * 11 9 8 14 14 C 1.46497 * 120.00258 * 5.20244 * 13 11 9 15 15 C 1.46508 * 119.99646 * 185.19809 * 13 11 9 16 16 H 1.09000 * 109.47316 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46952 * 120.00648 * 15 13 11 18 18 C 1.50703 * 109.46888 * 240.00144 * 15 13 11 19 19 H 1.07998 * 120.00097 * 0.02562 * 18 15 13 20 20 C 1.37869 * 119.99772 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00369 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 120.00086 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47104 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.46712 * 299.99633 * 22 20 18 25 25 H 1.48501 * 109.47022 * 59.99372 * 22 20 18 26 26 C 1.38928 * 119.96285 * 0.27412 * 7 6 5 27 27 C 1.38041 * 119.98303 * 359.44786 * 26 7 6 28 28 H 1.08004 * 119.99590 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00702 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00702 * 180.02562 * 2 1 3 31 31 H 1.08002 * 119.98831 * 359.97438 * 5 4 3 32 32 H 1.07995 * 120.00697 * 179.97438 * 6 5 4 33 33 H 0.97008 * 120.00116 * 215.51507 * 8 7 6 34 34 H 1.09002 * 109.46592 * 275.92570 * 14 13 11 35 35 H 1.09001 * 109.47205 * 35.91896 * 14 13 11 36 36 H 1.08997 * 109.47475 * 155.92181 * 14 13 11 37 37 H 1.08993 * 109.47368 * 59.99548 * 17 15 13 38 38 H 1.09001 * 109.47105 * 179.97438 * 17 15 13 39 39 H 1.09005 * 109.46544 * 299.99673 * 17 15 13 40 40 H 0.97000 * 119.99793 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.00630 * 179.70118 * 26 7 6 42 42 H 1.08004 * 119.98961 * 180.27430 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9957 1.1747 0.0000 4 6 3.3481 1.1308 -0.1292 5 6 3.9816 -0.0774 -0.3843 6 6 5.3550 -0.1229 -0.5151 7 6 6.1032 1.0411 -0.3909 8 7 7.4946 0.9959 -0.5238 9 6 8.0602 0.1469 -1.4046 10 8 7.3677 -0.6309 -2.0282 11 6 9.5388 0.1631 -1.6132 12 8 10.2427 0.8621 -0.9140 13 7 10.0916 -0.5987 -2.5779 14 6 9.2352 -1.3542 -3.4954 15 6 11.5490 -0.6711 -2.7090 16 1 12.0139 -0.0473 -1.9455 17 6 12.0056 -2.1205 -2.5318 18 6 11.9555 -0.1797 -4.0744 19 1 11.2036 0.1535 -4.7743 20 6 13.2873 -0.1556 -4.4300 21 7 14.2031 -0.5610 -3.5775 22 14 13.7914 0.4541 -6.1223 23 1 15.2686 0.3806 -6.2552 24 1 13.1575 -0.3944 -7.1631 25 1 13.3487 1.8612 -6.2936 26 6 5.4689 2.2491 -0.1294 27 6 4.0949 2.2939 -0.0045 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9352 0.0004 30 1 1.8576 -0.9352 -0.0004 31 1 3.3999 -0.9824 -0.4796 32 1 5.8478 -1.0632 -0.7132 33 1 8.0527 1.5757 0.0179 34 1 8.9547 -2.3011 -3.0339 35 1 8.3371 -0.7762 -3.7134 36 1 9.7764 -1.5477 -4.4215 37 1 11.5407 -2.7439 -3.2955 38 1 13.0898 -2.1745 -2.6297 39 1 11.7115 -2.4759 -1.5441 40 1 15.1401 -0.5436 -3.8276 41 1 6.0503 3.1536 -0.0278 42 1 3.6012 3.2337 0.1944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839529094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:05 Heat of formation + Delta-G solvation = -47.297126 kcal Electronic energy + Delta-G solvation = -25812.587632 eV Core-core repulsion = 21952.357949 eV Total energy + Delta-G solvation = -3860.229683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24314 -41.44685 -40.08411 -38.67926 -37.50907 -35.73583 -34.68649 -32.98201 -32.06228 -31.48053 -29.94235 -27.84610 -27.33885 -26.15859 -24.70733 -23.81734 -22.22355 -21.65061 -20.71966 -19.82888 -19.00727 -18.61886 -18.31028 -17.62761 -17.22459 -16.94483 -16.55813 -16.43837 -16.06809 -15.76523 -15.39372 -15.02355 -14.89497 -14.57567 -14.43504 -14.20203 -14.00528 -13.71208 -13.58160 -13.53225 -13.21981 -12.99612 -12.81582 -12.76296 -12.72955 -12.38004 -12.23365 -12.11467 -11.87697 -11.44076 -11.24023 -10.58074 -10.39912 -10.13207 -10.07415 -9.55175 -8.77454 -8.17211 -6.33514 -0.10875 0.26127 0.51231 1.28059 1.39755 1.43868 1.45166 1.52982 2.09929 2.11430 2.38855 2.60146 2.69779 3.11339 3.27545 3.65677 3.77939 3.98881 4.17409 4.32897 4.39889 4.45913 4.65188 4.70403 4.71965 4.86600 4.94350 4.95965 4.98543 5.02155 5.13900 5.19559 5.24789 5.27832 5.39394 5.39598 5.50412 5.60865 5.73840 5.88304 6.02454 6.09518 6.46524 6.60057 6.65385 6.74813 6.97605 7.36922 8.87193 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.002410 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.401557 B =11617.484057 C =11712.454958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 O -0.266 6.266 4 C 0.095 3.905 5 C -0.182 4.182 6 C -0.092 4.092 7 C 0.096 3.904 8 N -0.634 5.634 9 C 0.518 3.482 10 O -0.507 6.507 11 C 0.487 3.513 12 O -0.564 6.564 13 N -0.563 5.563 14 C 0.088 3.912 15 C 0.259 3.741 16 H 0.024 0.976 17 C -0.134 4.134 18 C -0.543 4.543 19 H 0.060 0.940 20 C 0.019 3.981 21 N -0.913 5.913 22 Si 0.965 3.035 23 H -0.282 1.282 24 H -0.265 1.265 25 H -0.277 1.277 26 C -0.094 4.094 27 C -0.123 4.123 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.429 0.571 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.267 0.733 41 H 0.161 0.839 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.387 1.099 6.973 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.070 4.070 3 O -0.177 6.177 4 C 0.051 3.949 5 C -0.201 4.201 6 C -0.112 4.112 7 C 0.002 3.998 8 N -0.282 5.282 9 C 0.300 3.700 10 O -0.382 6.382 11 C 0.269 3.731 12 O -0.444 6.444 13 N -0.293 5.293 14 C -0.054 4.054 15 C 0.158 3.842 16 H 0.042 0.958 17 C -0.192 4.192 18 C -0.581 4.581 19 H 0.078 0.922 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.790 3.210 23 H -0.207 1.207 24 H -0.190 1.190 25 H -0.202 1.202 26 C -0.114 4.114 27 C -0.142 4.142 28 H 0.168 0.832 29 H 0.121 0.879 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.268 0.732 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.179 0.821 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.340 1.027 6.878 24.354 hybrid contribution 1.097 0.284 -0.519 1.247 sum -22.243 1.311 6.359 23.171 Atomic orbital electron populations 1.23873 0.92980 1.04471 1.05163 1.22946 0.93995 0.87973 1.02120 1.84329 1.17066 1.32577 1.83707 1.19216 0.81614 0.95050 0.99005 1.21275 0.94724 0.98275 1.05805 1.21108 0.93607 0.98039 0.98464 1.17932 0.81900 0.94980 1.04945 1.43036 1.05925 1.40281 1.38911 1.20087 0.88308 0.81539 0.80071 1.90692 1.63625 1.37640 1.46285 1.20225 0.88636 0.81771 0.82442 1.90701 1.63734 1.41769 1.48235 1.48233 1.09218 1.42856 1.28964 1.22002 0.93818 0.96242 0.93302 1.18821 0.73856 0.94739 0.96781 0.95811 1.21905 1.03432 0.96217 0.97682 1.21462 0.92872 1.44189 0.99579 0.92165 1.25686 0.96249 0.95028 1.01145 1.69989 1.01376 1.47102 1.36648 0.85505 0.77100 0.78780 0.79620 1.20732 1.18960 1.20220 1.21010 0.93935 0.96444 0.99995 1.20482 0.92255 0.97694 1.03797 0.83202 0.87888 0.83723 0.82905 0.84902 0.73181 0.91679 0.89834 0.90931 0.93533 0.90683 0.95711 0.92414 0.82110 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.64 14.63 67.09 0.98 -1.65 16 2 C -0.01 -0.16 9.94 67.09 0.67 0.51 16 3 O -0.27 -5.10 10.01 -33.29 -0.33 -5.43 16 4 C 0.10 1.86 6.66 22.53 0.15 2.01 16 5 C -0.18 -3.58 9.15 22.35 0.20 -3.37 16 6 C -0.09 -2.18 8.68 22.39 0.19 -1.99 16 7 C 0.10 2.24 6.29 38.19 0.24 2.48 16 8 N -0.63 -16.77 5.33 -304.76 -1.62 -18.39 16 9 C 0.52 17.13 7.54 87.23 0.66 17.78 16 10 O -0.51 -16.99 10.85 -3.37 -0.04 -17.03 16 11 C 0.49 20.09 7.72 87.23 0.67 20.76 16 12 O -0.56 -26.09 15.83 -3.29 -0.05 -26.15 16 13 N -0.56 -24.47 2.75 -828.49 -2.28 -26.75 16 14 C 0.09 3.21 8.16 127.77 1.04 4.25 16 15 C 0.26 13.24 2.62 44.24 0.12 13.36 16 16 H 0.02 1.41 6.91 -2.39 -0.02 1.40 16 17 C -0.13 -6.34 8.97 71.98 0.65 -5.70 16 18 C -0.54 -29.08 7.95 25.60 0.20 -28.88 16 19 H 0.06 3.17 7.44 -2.91 -0.02 3.15 16 20 C 0.02 1.03 5.30 84.65 0.45 1.48 16 21 N -0.91 -51.13 11.32 21.45 0.24 -50.88 16 22 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.09 -1.71 9.96 22.39 0.22 -1.49 16 27 C -0.12 -2.15 9.98 22.35 0.22 -1.93 16 28 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.10 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.15 1.55 5.69 -2.91 -0.02 1.54 16 31 H 0.15 2.27 5.80 -2.91 -0.02 2.25 16 32 H 0.13 3.47 6.27 -2.91 -0.02 3.45 16 33 H 0.43 10.17 8.30 -92.70 -0.77 9.40 16 34 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 35 H 0.08 2.87 5.99 -2.39 -0.01 2.85 16 36 H 0.07 2.70 7.12 -2.39 -0.02 2.68 16 37 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 38 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 39 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.21 354.54 4.91 -60.30 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.29 Total: 22.31 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.67 Total: 17.62 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.66 Total: -96.03 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.42 Total: -48.60 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.21 4.91 -60.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839529094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.005 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds