Wall clock time and date at job start Tue Mar 31 2020 12:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.99183 * 2 1 4 4 O 1.43744 * 109.87736 * 238.91761 * 2 1 3 5 5 C 1.44381 * 106.97232 * 214.06459 * 4 2 1 6 6 C 1.54993 * 103.49186 * 40.05869 * 5 4 2 7 7 C 1.54102 * 109.87812 * 121.08665 * 2 1 3 8 8 H 1.09002 * 110.59590 * 240.19259 * 7 2 1 9 9 C 1.50702 * 110.48761 * 2.77540 * 7 2 1 10 10 O 1.21308 * 119.99990 * 89.47341 * 9 7 2 11 11 N 1.34783 * 120.00075 * 269.47555 * 9 7 2 12 12 N 1.40099 * 119.99871 * 179.72551 * 11 9 7 13 13 C 1.29746 * 119.99993 * 180.27528 * 12 11 9 14 14 C 1.47491 * 120.00126 * 180.02562 * 13 12 11 15 15 C 1.39752 * 120.12188 * 359.72191 * 14 13 12 16 16 C 1.37988 * 119.97851 * 179.72213 * 15 14 13 17 17 C 1.38250 * 120.23171 * 0.53430 * 16 15 14 18 18 C 1.38983 * 120.24542 * 359.76489 * 17 16 15 19 19 O 1.35757 * 119.99174 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00053 * 174.36280 * 19 18 17 21 21 H 1.07999 * 120.00116 * 5.06326 * 20 19 18 22 22 C 1.38651 * 119.99754 * 185.06621 * 20 19 18 23 23 N 1.31553 * 120.00499 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99535 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47151 * 90.00101 * 24 22 20 26 26 H 1.48506 * 109.46815 * 209.99512 * 24 22 20 27 27 H 1.48498 * 109.47098 * 329.99309 * 24 22 20 28 28 C 1.38611 * 120.01706 * 359.95733 * 18 17 16 29 29 H 1.08998 * 109.47194 * 294.07984 * 1 2 3 30 30 H 1.09002 * 109.47195 * 54.08524 * 1 2 3 31 31 H 1.09000 * 109.46990 * 174.08055 * 1 2 3 32 32 H 1.09003 * 110.62129 * 281.55691 * 5 4 2 33 33 H 1.08995 * 110.62118 * 158.56101 * 5 4 2 34 34 H 1.08999 * 110.90795 * 204.77751 * 6 5 4 35 35 H 1.08998 * 110.90735 * 81.17786 * 6 5 4 36 36 H 0.96997 * 119.99686 * 0.02562 * 11 9 7 37 37 H 1.08003 * 120.00094 * 359.97438 * 13 12 11 38 38 H 1.07996 * 120.01573 * 0.02562 * 15 14 13 39 39 H 1.07997 * 119.88203 * 180.25997 * 16 15 14 40 40 H 1.07993 * 119.87811 * 179.74513 * 17 16 15 41 41 H 0.96997 * 120.00295 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.11680 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8914 0.6576 7 6 2.0540 -0.7483 1.2411 8 1 2.6614 -0.0872 1.8593 9 6 0.9073 -1.3105 2.0412 10 8 0.4874 -2.4228 1.8002 11 7 0.3483 -0.5775 3.0244 12 7 -0.7214 -1.0979 3.7644 13 6 -1.2631 -0.3902 4.7074 14 6 -2.3889 -0.9383 5.4868 15 6 -2.8781 -2.2174 5.2079 16 6 -3.9278 -2.7295 5.9427 17 6 -4.5060 -1.9772 6.9482 18 6 -4.0311 -0.7017 7.2295 19 8 -4.6030 0.0328 8.2177 20 6 -4.0224 1.2120 8.5182 21 1 -3.1928 1.5715 7.9276 22 6 -4.4905 1.9630 9.5856 23 7 -5.5014 1.5254 10.3048 24 14 -3.6865 3.5972 10.0015 25 1 -4.3672 4.6873 9.2575 26 1 -3.8007 3.8477 11.4608 27 1 -2.2528 3.5555 9.6170 28 6 -2.9734 -0.1794 6.5016 29 1 -0.3633 0.4193 0.9382 30 1 -0.3634 0.6028 -0.8323 31 1 -0.3633 -1.0222 -0.1060 32 1 4.0686 -0.6589 -0.7356 33 1 3.4585 -2.1908 -1.4400 34 1 3.8331 -2.0225 1.2374 35 1 2.3540 -2.8220 0.6098 36 1 0.6839 0.3120 3.2168 37 1 -0.8890 0.5999 4.9222 38 1 -2.4316 -2.8068 4.4207 39 1 -4.3018 -3.7198 5.7286 40 1 -5.3299 -2.3820 7.5170 41 1 -5.8286 2.0506 11.0517 42 1 -2.6028 0.8115 6.7191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842555960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:23 Heat of formation + Delta-G solvation = -38.089000 kcal Electronic energy + Delta-G solvation = -25285.243186 eV Core-core repulsion = 21425.412798 eV Total energy + Delta-G solvation = -3859.830389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91779 -39.15131 -38.68709 -37.03415 -35.93321 -33.33840 -32.48630 -32.11019 -31.80694 -29.84231 -28.74152 -26.77296 -25.42947 -24.03694 -22.59591 -22.40630 -21.66606 -20.45867 -19.92897 -18.19878 -17.63343 -17.20372 -16.76257 -16.62620 -16.12219 -15.55753 -15.18099 -15.11241 -14.63966 -14.38241 -14.20885 -13.77313 -13.70962 -13.39918 -12.89295 -12.82547 -12.72130 -12.55257 -12.47089 -12.43150 -11.74758 -11.64182 -11.41637 -11.37142 -11.29589 -10.95422 -10.91731 -10.86820 -10.51423 -10.37142 -10.15599 -9.90507 -9.48608 -9.38756 -8.86670 -7.93813 -7.30526 -6.49780 -4.09996 1.14093 2.23604 2.31548 2.34146 2.94119 3.08192 3.09871 3.13614 3.39932 3.90865 3.92313 4.12410 4.34119 4.54347 4.58235 4.70184 4.73758 4.78314 4.91570 5.01651 5.04617 5.06065 5.18449 5.22524 5.31337 5.44012 5.57525 5.63891 5.70275 5.74934 5.89377 5.90316 6.10102 6.25786 6.45343 6.56698 6.71006 6.91750 6.99496 7.11599 7.19799 7.31600 7.47717 7.67561 7.93226 8.27785 8.95323 9.64343 10.68111 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002368 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.218416 B =11819.533436 C =12824.353485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.080 0.920 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.140 4.140 8 H 0.106 0.894 9 C 0.546 3.454 10 O -0.499 6.499 11 N -0.588 5.588 12 N -0.243 5.243 13 C 0.135 3.865 14 C -0.026 4.026 15 C -0.162 4.162 16 C -0.086 4.086 17 C -0.169 4.169 18 C 0.146 3.854 19 O -0.177 6.177 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.200 4.200 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.381 0.619 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.379 -0.541 -16.375 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.098 0.902 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.164 4.164 8 H 0.124 0.876 9 C 0.332 3.668 10 O -0.371 6.371 11 N -0.330 5.330 12 N -0.047 5.047 13 C -0.075 4.075 14 C -0.029 4.029 15 C -0.183 4.183 16 C -0.104 4.104 17 C -0.189 4.189 18 C 0.093 3.907 19 O -0.080 6.080 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.222 4.222 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.219 0.781 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.783 -2.125 -17.021 23.310 hybrid contribution 0.917 2.314 1.002 2.683 sum 16.700 0.189 -16.019 23.142 Atomic orbital electron populations 1.22153 0.93180 1.04299 1.02835 1.22599 0.95684 0.95175 0.83206 0.90171 1.88935 1.39776 1.67625 1.32326 1.23572 0.87553 0.96556 0.95145 1.23198 0.99843 0.98996 0.96082 1.22848 0.95975 0.99782 0.97774 0.87615 1.19967 0.83077 0.85317 0.78445 1.90724 1.61622 1.19009 1.65700 1.47109 1.32532 1.18425 1.34940 1.75081 0.99338 1.24303 1.05941 1.24672 0.94425 0.96485 0.91896 1.17979 0.94191 0.94836 0.95855 1.20888 0.99481 0.95589 1.02392 1.20658 0.95926 0.98800 0.95038 1.20437 1.03686 0.93179 1.01589 1.19174 0.91163 0.91016 0.89359 1.84014 1.48321 1.30491 1.45223 1.21272 1.16668 0.94392 1.14701 0.89138 1.25275 0.96462 0.99618 0.95088 1.70028 1.23572 1.38050 1.17936 0.85732 0.79155 0.80396 0.78237 1.19888 1.20246 1.19249 1.21192 1.00508 1.01454 0.99003 0.91110 0.91162 0.90692 0.91859 0.88398 0.89503 0.88129 0.78108 0.86768 0.86187 0.86480 0.86179 0.91967 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 8.41 37.16 0.31 -1.37 16 2 C 0.09 0.78 4.05 -26.15 -0.11 0.68 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 O -0.37 -3.73 11.19 -35.23 -0.39 -4.12 16 5 C 0.05 0.34 7.72 38.21 0.29 0.63 16 6 C -0.14 -1.12 6.65 -24.73 -0.16 -1.28 16 7 C -0.14 -1.15 3.44 -90.25 -0.31 -1.47 16 8 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 9 C 0.55 6.72 4.93 -10.98 -0.05 6.66 16 10 O -0.50 -8.34 15.55 5.53 0.09 -8.25 16 11 N -0.59 -6.91 5.48 31.22 0.17 -6.74 16 12 N -0.24 -3.71 10.15 32.16 0.33 -3.38 16 13 C 0.14 1.98 10.75 -14.66 -0.16 1.82 16 14 C -0.03 -0.46 5.87 -105.07 -0.62 -1.08 16 15 C -0.16 -2.89 9.58 -39.11 -0.37 -3.27 16 16 C -0.09 -1.51 10.02 -39.67 -0.40 -1.91 16 17 C -0.17 -3.40 9.98 -39.30 -0.39 -3.79 16 18 C 0.15 3.34 6.64 -39.17 -0.26 3.08 16 19 O -0.18 -4.81 9.76 0.02 0.00 -4.81 16 20 C -0.39 -10.47 9.48 30.88 0.29 -10.17 16 21 H 0.09 2.18 5.20 -52.49 -0.27 1.90 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.51 13.67 55.48 0.76 -23.75 16 24 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 C -0.20 -4.01 8.91 -38.95 -0.35 -4.36 16 29 H 0.07 0.69 6.76 -51.93 -0.35 0.34 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.04 6.86 -51.93 -0.36 0.68 16 36 H 0.38 3.04 8.65 -182.60 -1.58 1.46 16 37 H 0.12 1.31 8.02 -52.48 -0.42 0.88 16 38 H 0.12 2.08 7.55 -52.49 -0.40 1.69 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.13 2.55 5.63 -52.49 -0.30 2.26 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -33.45 357.90 -7.63 -41.08 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.57 Total: 4.83 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.38 Total: -14.84 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 1.26 Total: -33.87 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.31 Total: -17.18 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.45 -7.63 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842555960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.991 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds