Wall clock time and date at job start Tue Mar 31 2020 12:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.99183 * 2 1 4 4 O 1.43744 * 109.87736 * 238.91761 * 2 1 3 5 5 C 1.44381 * 106.97232 * 214.06459 * 4 2 1 6 6 C 1.54993 * 103.49186 * 40.05869 * 5 4 2 7 7 C 1.54102 * 109.87812 * 121.08665 * 2 1 3 8 8 H 1.09002 * 110.59590 * 240.19259 * 7 2 1 9 9 C 1.50702 * 110.48761 * 2.77540 * 7 2 1 10 10 O 1.21308 * 119.99990 * 89.47341 * 9 7 2 11 11 N 1.34783 * 120.00075 * 269.47555 * 9 7 2 12 12 N 1.40099 * 119.99871 * 179.72551 * 11 9 7 13 13 C 1.29746 * 119.99993 * 180.27528 * 12 11 9 14 14 C 1.47491 * 120.00126 * 180.02562 * 13 12 11 15 15 C 1.39752 * 120.12188 * 359.72191 * 14 13 12 16 16 C 1.37988 * 119.97851 * 179.72213 * 15 14 13 17 17 C 1.38250 * 120.23171 * 0.53430 * 16 15 14 18 18 C 1.38983 * 120.24542 * 359.76489 * 17 16 15 19 19 O 1.35757 * 119.99174 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00053 * 174.36280 * 19 18 17 21 21 H 1.07999 * 120.00116 * 5.06326 * 20 19 18 22 22 C 1.38651 * 119.99754 * 185.06621 * 20 19 18 23 23 N 1.31553 * 120.00499 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99535 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47151 * 90.00101 * 24 22 20 26 26 H 1.48506 * 109.46815 * 209.99512 * 24 22 20 27 27 H 1.48498 * 109.47098 * 329.99309 * 24 22 20 28 28 C 1.38611 * 120.01706 * 359.95733 * 18 17 16 29 29 H 1.08998 * 109.47194 * 294.07984 * 1 2 3 30 30 H 1.09002 * 109.47195 * 54.08524 * 1 2 3 31 31 H 1.09000 * 109.46990 * 174.08055 * 1 2 3 32 32 H 1.09003 * 110.62129 * 281.55691 * 5 4 2 33 33 H 1.08995 * 110.62118 * 158.56101 * 5 4 2 34 34 H 1.08999 * 110.90795 * 204.77751 * 6 5 4 35 35 H 1.08998 * 110.90735 * 81.17786 * 6 5 4 36 36 H 0.96997 * 119.99686 * 0.02562 * 11 9 7 37 37 H 1.08003 * 120.00094 * 359.97438 * 13 12 11 38 38 H 1.07996 * 120.01573 * 0.02562 * 15 14 13 39 39 H 1.07997 * 119.88203 * 180.25997 * 16 15 14 40 40 H 1.07993 * 119.87811 * 179.74513 * 17 16 15 41 41 H 0.96997 * 120.00295 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.11680 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8914 0.6576 7 6 2.0540 -0.7483 1.2411 8 1 2.6614 -0.0872 1.8593 9 6 0.9073 -1.3105 2.0412 10 8 0.4874 -2.4228 1.8002 11 7 0.3483 -0.5775 3.0244 12 7 -0.7214 -1.0979 3.7644 13 6 -1.2631 -0.3902 4.7074 14 6 -2.3889 -0.9383 5.4868 15 6 -2.8781 -2.2174 5.2079 16 6 -3.9278 -2.7295 5.9427 17 6 -4.5060 -1.9772 6.9482 18 6 -4.0311 -0.7017 7.2295 19 8 -4.6030 0.0328 8.2177 20 6 -4.0224 1.2120 8.5182 21 1 -3.1928 1.5715 7.9276 22 6 -4.4905 1.9630 9.5856 23 7 -5.5014 1.5254 10.3048 24 14 -3.6865 3.5972 10.0015 25 1 -4.3672 4.6873 9.2575 26 1 -3.8007 3.8477 11.4608 27 1 -2.2528 3.5555 9.6170 28 6 -2.9734 -0.1794 6.5016 29 1 -0.3633 0.4193 0.9382 30 1 -0.3634 0.6028 -0.8323 31 1 -0.3633 -1.0222 -0.1060 32 1 4.0686 -0.6589 -0.7356 33 1 3.4585 -2.1908 -1.4400 34 1 3.8331 -2.0225 1.2374 35 1 2.3540 -2.8220 0.6098 36 1 0.6839 0.3120 3.2168 37 1 -0.8890 0.5999 4.9222 38 1 -2.4316 -2.8068 4.4207 39 1 -4.3018 -3.7198 5.7286 40 1 -5.3299 -2.3820 7.5170 41 1 -5.8286 2.0506 11.0517 42 1 -2.6028 0.8115 6.7191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842555960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:22 Heat of formation + Delta-G solvation = -61.312792 kcal Electronic energy + Delta-G solvation = -25286.250245 eV Core-core repulsion = 21425.412798 eV Total energy + Delta-G solvation = -3860.837448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73100 -40.77199 -39.58717 -38.51882 -37.26481 -34.44555 -34.11256 -33.22460 -32.50093 -31.23827 -30.29612 -27.56896 -27.23594 -25.23089 -23.47856 -23.23341 -23.15339 -21.67763 -20.97336 -19.87272 -18.77216 -18.29314 -17.99606 -17.58173 -16.78819 -16.74481 -16.34695 -16.22744 -16.07725 -15.95052 -15.51666 -15.29008 -15.08533 -14.38242 -14.21617 -14.16679 -13.75976 -13.51901 -13.49030 -13.41954 -13.14696 -12.91214 -12.52629 -12.46661 -12.38867 -12.25454 -12.08653 -12.04908 -11.92920 -11.40086 -11.32505 -11.08521 -10.83561 -10.63975 -10.52242 -9.35502 -8.95355 -8.42319 -6.10907 -0.19714 0.70159 1.17206 1.35637 1.39904 1.48841 1.57019 1.78058 2.21225 2.80490 2.89766 3.19624 3.21884 3.41833 3.51419 3.62935 3.73338 3.95763 4.02815 4.14415 4.22371 4.25597 4.28169 4.34473 4.36789 4.48726 4.51991 4.60491 4.77663 4.81795 4.87181 4.88593 5.05399 5.09256 5.12639 5.13132 5.19736 5.60388 5.65403 5.65733 5.87220 6.03051 6.04997 6.12634 6.42663 7.02305 7.31637 7.81848 8.80717 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002368 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.218416 B =11819.533436 C =12824.353485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.115 0.885 4 O -0.397 6.397 5 C 0.047 3.953 6 C -0.145 4.145 7 C -0.133 4.133 8 H 0.150 0.850 9 C 0.543 3.457 10 O -0.550 6.550 11 N -0.576 5.576 12 N -0.267 5.267 13 C 0.133 3.867 14 C -0.021 4.021 15 C -0.157 4.157 16 C -0.075 4.075 17 C -0.182 4.182 18 C 0.112 3.888 19 O -0.229 6.229 20 C -0.411 4.411 21 H 0.109 0.891 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.247 1.247 28 C -0.199 4.199 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.891 0.995 -18.118 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.133 0.867 4 O -0.317 6.317 5 C -0.028 4.028 6 C -0.183 4.183 7 C -0.155 4.155 8 H 0.168 0.832 9 C 0.331 3.669 10 O -0.425 6.425 11 N -0.320 5.320 12 N -0.071 5.071 13 C -0.076 4.076 14 C -0.024 4.024 15 C -0.178 4.178 16 C -0.093 4.093 17 C -0.202 4.202 18 C 0.062 3.938 19 O -0.136 6.136 20 C -0.487 4.487 21 H 0.126 0.874 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.170 1.170 28 C -0.221 4.221 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.332 -0.598 -18.808 26.978 hybrid contribution -0.068 1.576 1.244 2.009 sum 19.263 0.978 -17.563 26.086 Atomic orbital electron populations 1.22136 0.95007 1.02043 1.03238 1.22758 0.94318 0.96717 0.82837 0.86697 1.88907 1.41255 1.68214 1.33284 1.23768 0.87294 0.97290 0.94489 1.23213 1.00358 0.97453 0.97258 1.22987 0.94551 1.00433 0.97562 0.83208 1.20861 0.83360 0.84642 0.77987 1.90709 1.63280 1.21471 1.67056 1.47000 1.31345 1.19448 1.34170 1.74927 1.00325 1.25903 1.05941 1.24525 0.93639 0.97850 0.91633 1.18191 0.94649 0.94451 0.95073 1.21181 0.98955 0.95701 1.01962 1.21001 0.95090 0.99797 0.93420 1.20649 1.04152 0.92852 1.02577 1.19694 0.92687 0.91962 0.89505 1.83987 1.50415 1.31561 1.47600 1.21854 1.17132 0.94594 1.15153 0.87395 1.26586 0.97023 1.03815 0.94738 1.70188 1.26181 1.40327 1.19306 0.84599 0.79011 0.74928 0.77786 1.18977 1.20219 1.17042 1.21240 0.99824 1.01872 0.99163 0.90878 0.90493 0.94313 0.88897 0.88004 0.86890 0.91476 0.75401 0.83223 0.85268 0.83044 0.86241 0.91982 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.41 71.98 0.61 -2.51 16 2 C 0.09 1.28 4.05 30.97 0.13 1.41 16 3 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 4 O -0.40 -7.18 11.19 -148.98 -1.67 -8.85 16 5 C 0.05 0.53 7.72 72.66 0.56 1.09 16 6 C -0.14 -1.90 6.65 31.89 0.21 -1.69 16 7 C -0.13 -1.72 3.44 -10.55 -0.04 -1.76 16 8 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 9 C 0.54 12.28 4.93 87.66 0.43 12.72 16 10 O -0.55 -18.29 15.55 -3.12 -0.05 -18.34 16 11 N -0.58 -11.83 5.48 -173.50 -0.95 -12.78 16 12 N -0.27 -7.52 10.15 -52.16 -0.53 -8.05 16 13 C 0.13 3.55 10.75 87.44 0.94 4.49 16 14 C -0.02 -0.72 5.87 -20.16 -0.12 -0.84 16 15 C -0.16 -5.34 9.58 22.58 0.22 -5.12 16 16 C -0.08 -2.55 10.02 22.21 0.22 -2.33 16 17 C -0.18 -7.46 9.98 22.45 0.22 -7.23 16 18 C 0.11 5.26 6.64 22.54 0.15 5.41 16 19 O -0.23 -13.09 9.76 -22.84 -0.22 -13.31 16 20 C -0.41 -22.50 9.48 67.92 0.64 -21.85 16 21 H 0.11 5.22 5.20 -2.91 -0.02 5.20 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -54.97 13.67 21.61 0.30 -54.67 16 24 Si 1.02 40.43 29.55 68.60 2.03 42.46 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 28 C -0.20 -7.94 8.91 22.68 0.20 -7.74 16 29 H 0.07 1.28 6.76 -2.39 -0.02 1.27 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.00 7.36 -2.39 -0.02 0.98 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.36 6.86 -2.39 -0.02 1.35 16 36 H 0.40 4.75 8.65 -213.32 -1.85 2.90 16 37 H 0.15 2.83 8.02 -2.91 -0.02 2.81 16 38 H 0.13 4.23 7.55 -2.91 -0.02 4.21 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.14 5.21 5.63 -2.91 -0.02 5.20 16 Total: -1.00 -79.00 357.90 2.97 -76.04 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.79 Total: 24.32 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.85 Total: -26.81 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.18 Total: -75.51 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.94 Total: -40.50 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -79.00 2.97 -76.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842555960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.723 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds