Wall clock time and date at job start Tue Mar 31 2020 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.98735 * 2 1 4 4 O 1.43739 * 109.87943 * 238.90824 * 2 1 3 5 5 C 1.44380 * 106.97669 * 267.08810 * 4 2 1 6 6 C 1.54991 * 103.48981 * 319.94037 * 5 4 2 7 7 C 1.54106 * 109.87772 * 121.07799 * 2 1 3 8 8 H 1.09002 * 110.48462 * 358.58520 * 7 2 1 9 9 C 1.50703 * 110.48554 * 236.07131 * 7 2 1 10 10 O 1.21306 * 120.00061 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99723 * 180.02562 * 9 7 2 12 12 N 1.40096 * 119.99893 * 180.02562 * 11 9 7 13 13 C 1.29761 * 119.99960 * 179.97438 * 12 11 9 14 14 C 1.47496 * 119.99936 * 180.02562 * 13 12 11 15 15 C 1.39756 * 120.12111 * 359.97438 * 14 13 12 16 16 C 1.37980 * 119.97846 * 180.02562 * 15 14 13 17 17 C 1.38253 * 120.22752 * 359.97438 * 16 15 14 18 18 C 1.38976 * 120.25202 * 0.04222 * 17 16 15 19 19 O 1.35753 * 119.99325 * 179.97438 * 18 17 16 20 20 C 1.34840 * 117.00066 * 174.43731 * 19 18 17 21 21 H 1.07998 * 119.99754 * 5.05999 * 20 19 18 22 22 C 1.38647 * 119.99872 * 185.05754 * 20 19 18 23 23 N 1.31553 * 120.00304 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99819 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47010 * 89.99791 * 24 22 20 26 26 H 1.48496 * 109.47180 * 209.99898 * 24 22 20 27 27 H 1.48498 * 109.46811 * 330.00426 * 24 22 20 28 28 C 1.38616 * 120.01486 * 359.95841 * 18 17 16 29 29 H 1.08999 * 109.47236 * 298.91974 * 1 2 3 30 30 H 1.08995 * 109.47271 * 58.92331 * 1 2 3 31 31 H 1.09007 * 109.47002 * 178.92167 * 1 2 3 32 32 H 1.08998 * 110.61770 * 78.44307 * 5 4 2 33 33 H 1.09000 * 110.61388 * 201.27997 * 5 4 2 34 34 H 1.08999 * 110.90769 * 278.82405 * 6 5 4 35 35 H 1.09005 * 110.90339 * 155.22126 * 6 5 4 36 36 H 0.97001 * 120.00137 * 359.97438 * 11 9 7 37 37 H 1.07993 * 120.00014 * 0.02562 * 13 12 11 38 38 H 1.08002 * 120.01126 * 359.74533 * 15 14 13 39 39 H 1.07992 * 119.88449 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.87440 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00285 * 179.97438 * 23 22 20 42 42 H 1.08001 * 120.11366 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6981 -1.1575 5 6 2.2281 -2.0714 -0.7644 6 6 2.8325 -1.9523 0.6578 7 6 2.0540 -0.7481 1.2412 8 1 1.2237 -1.0909 1.8587 9 6 2.9743 0.1374 2.0412 10 8 3.2028 1.2690 1.6685 11 7 3.5436 -0.3280 3.1707 12 7 4.3988 0.4953 3.9147 13 6 4.9465 0.0475 5.0025 14 6 5.8463 0.9145 5.7861 15 6 6.1113 2.2186 5.3591 16 6 6.9540 3.0269 6.0941 17 6 7.5381 2.5517 7.2536 18 6 7.2815 1.2564 7.6869 19 8 7.8583 0.7950 8.8259 20 6 7.4793 -0.4267 9.2525 21 1 6.8103 -1.0249 8.6517 22 6 7.9485 -0.9148 10.4624 23 7 8.7630 -0.1859 11.1944 24 14 7.4241 -2.6077 11.0531 25 1 8.3836 -3.6253 10.5540 26 1 7.4063 -2.6303 12.5378 27 1 6.0656 -2.9131 10.5369 28 6 6.4366 0.4355 6.9564 29 1 -0.3633 0.4970 0.8995 30 1 -0.3633 0.5304 -0.8801 31 1 -0.3633 -1.0276 -0.0193 32 1 1.2814 -2.6109 -0.7353 33 1 2.9274 -2.5621 -1.4415 34 1 3.9003 -1.7389 0.6101 35 1 2.6432 -2.8557 1.2377 36 1 3.3606 -1.2327 3.4690 37 1 4.7434 -0.9600 5.3341 38 1 5.6602 2.5920 4.4516 39 1 7.1580 4.0342 5.7625 40 1 8.1964 3.1895 7.8248 41 1 9.0910 -0.5273 12.0411 42 1 6.2357 -0.5713 7.2918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842555965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:31 Heat of formation + Delta-G solvation = -42.194154 kcal Electronic energy + Delta-G solvation = -25030.367332 eV Core-core repulsion = 21170.358930 eV Total energy + Delta-G solvation = -3860.008401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82032 -39.16620 -38.77122 -37.04731 -35.94856 -33.34976 -32.50236 -32.12986 -31.57887 -29.86290 -28.76420 -27.22333 -25.42801 -23.91623 -22.66416 -21.94704 -21.64883 -20.51056 -20.13383 -18.33129 -17.93953 -17.03926 -16.81905 -16.51651 -16.13854 -15.28695 -15.11437 -14.93613 -14.64296 -14.37690 -14.20813 -13.79883 -13.75569 -13.70329 -13.19397 -12.88112 -12.85659 -12.48031 -12.41429 -12.31591 -11.89574 -11.75156 -11.46412 -11.35007 -11.31703 -10.96391 -10.92612 -10.87080 -10.51894 -10.29790 -10.08783 -9.95760 -9.49174 -9.41036 -8.87136 -7.94748 -7.30947 -6.50122 -4.10385 1.13140 2.23292 2.29370 2.34050 2.94042 3.07753 3.09510 3.13240 3.42486 3.90514 3.95085 4.08178 4.28791 4.53957 4.59736 4.64860 4.72818 4.76850 4.96620 5.01740 5.04469 5.07956 5.10006 5.22134 5.23797 5.34728 5.47219 5.62790 5.70482 5.72207 5.83419 5.89039 6.09690 6.25353 6.48998 6.56322 6.70571 6.90517 6.98957 7.10734 7.19373 7.31180 7.45258 7.67155 7.92853 8.25933 8.94953 9.63940 10.67757 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002287 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.567637 B =12241.028785 C =13373.372790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.366 6.366 5 C 0.047 3.953 6 C -0.148 4.148 7 C -0.137 4.137 8 H 0.114 0.886 9 C 0.540 3.460 10 O -0.500 6.500 11 N -0.585 5.585 12 N -0.244 5.244 13 C 0.136 3.864 14 C -0.026 4.026 15 C -0.162 4.162 16 C -0.086 4.086 17 C -0.168 4.168 18 C 0.146 3.854 19 O -0.177 6.177 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.199 4.199 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.382 0.618 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.188 -6.151 -17.474 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.137 0.863 4 O -0.285 6.285 5 C -0.030 4.030 6 C -0.186 4.186 7 C -0.160 4.160 8 H 0.132 0.868 9 C 0.326 3.674 10 O -0.372 6.372 11 N -0.326 5.326 12 N -0.048 5.048 13 C -0.074 4.074 14 C -0.029 4.029 15 C -0.183 4.183 16 C -0.104 4.104 17 C -0.189 4.189 18 C 0.093 3.907 19 O -0.080 6.080 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.193 1.193 28 C -0.221 4.221 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.219 0.781 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.921 -4.484 -18.319 23.441 hybrid contribution -0.474 -2.417 1.285 2.778 sum -14.395 -6.900 -17.034 23.345 Atomic orbital electron populations 1.22281 0.94879 1.02457 1.03078 1.22809 0.94015 0.98402 0.82481 0.86275 1.88969 1.86083 1.20461 1.32979 1.23545 0.99972 0.84902 0.94566 1.23194 1.01151 0.96942 0.97304 1.22795 0.98611 0.96413 0.98211 0.86773 1.20124 0.80186 0.87915 0.79219 1.90719 1.59852 1.19085 1.67526 1.46969 1.46113 1.14795 1.24768 1.75094 1.03981 1.19268 1.06439 1.24682 0.93744 0.97770 0.91163 1.17979 0.97204 0.93361 0.94365 1.20893 1.02376 0.93642 1.01427 1.20658 0.96609 0.98925 0.94218 1.20439 1.05241 0.94267 0.98923 1.19172 0.91302 0.92288 0.87951 1.84016 1.56611 1.33954 1.33462 1.21272 1.30270 0.90848 1.04656 0.89140 1.25274 0.96288 0.99830 0.95051 1.70030 1.29881 1.36964 1.12704 0.85730 0.79020 0.80376 0.78385 1.19892 1.20240 1.19253 1.21192 1.03081 1.01480 0.96386 0.91298 0.91274 0.92305 0.91796 0.88510 0.89700 0.89075 0.78059 0.86751 0.86173 0.86456 0.86164 0.91964 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.30 37.16 0.35 -0.85 16 2 C 0.08 0.77 3.70 -26.15 -0.10 0.67 16 3 H 0.12 1.42 6.44 -51.93 -0.33 1.08 16 4 O -0.37 -3.77 11.19 -35.23 -0.39 -4.16 16 5 C 0.05 0.31 7.66 38.21 0.29 0.60 16 6 C -0.15 -0.94 6.69 -24.73 -0.17 -1.11 16 7 C -0.14 -1.11 3.07 -90.24 -0.28 -1.39 16 8 H 0.11 0.63 7.70 -51.93 -0.40 0.23 16 9 C 0.54 6.72 7.13 -10.98 -0.08 6.64 16 10 O -0.50 -8.48 15.59 5.53 0.09 -8.39 16 11 N -0.59 -6.96 6.25 31.22 0.20 -6.77 16 12 N -0.24 -3.78 10.15 32.16 0.33 -3.46 16 13 C 0.14 2.01 10.75 -14.66 -0.16 1.86 16 14 C -0.03 -0.47 5.87 -105.07 -0.62 -1.09 16 15 C -0.16 -2.90 9.58 -39.11 -0.37 -3.27 16 16 C -0.09 -1.51 10.02 -39.67 -0.40 -1.91 16 17 C -0.17 -3.39 9.98 -39.30 -0.39 -3.79 16 18 C 0.15 3.34 6.64 -39.17 -0.26 3.08 16 19 O -0.18 -4.81 9.76 0.01 0.00 -4.81 16 20 C -0.39 -10.46 9.48 30.88 0.29 -10.17 16 21 H 0.09 2.17 5.20 -52.49 -0.27 1.90 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 24 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.20 -4.01 8.91 -38.96 -0.35 -4.36 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.34 8.11 -51.93 -0.42 -0.08 16 32 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.38 3.07 8.65 -182.60 -1.58 1.49 16 37 H 0.12 1.31 8.02 -52.49 -0.42 0.89 16 38 H 0.12 2.10 7.55 -52.49 -0.40 1.70 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.13 2.55 5.63 -52.49 -0.30 2.26 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -33.60 362.04 -7.55 -41.14 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.62 Total: 4.28 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.33 Total: -14.11 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 1.28 Total: -33.95 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.31 Total: -17.37 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.60 -7.55 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842555965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.052 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds