Wall clock time and date at job start Tue Mar 31 2020 12:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.98735 * 2 1 4 4 O 1.43739 * 109.87943 * 238.90824 * 2 1 3 5 5 C 1.44380 * 106.97669 * 267.08810 * 4 2 1 6 6 C 1.54991 * 103.48981 * 319.94037 * 5 4 2 7 7 C 1.54106 * 109.87772 * 121.07799 * 2 1 3 8 8 H 1.09002 * 110.48462 * 358.58520 * 7 2 1 9 9 C 1.50703 * 110.48554 * 236.07131 * 7 2 1 10 10 O 1.21306 * 120.00061 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99723 * 180.02562 * 9 7 2 12 12 N 1.40096 * 119.99893 * 180.02562 * 11 9 7 13 13 C 1.29761 * 119.99960 * 179.97438 * 12 11 9 14 14 C 1.47496 * 119.99936 * 180.02562 * 13 12 11 15 15 C 1.39756 * 120.12111 * 359.97438 * 14 13 12 16 16 C 1.37980 * 119.97846 * 180.02562 * 15 14 13 17 17 C 1.38253 * 120.22752 * 359.97438 * 16 15 14 18 18 C 1.38976 * 120.25202 * 0.04222 * 17 16 15 19 19 O 1.35753 * 119.99325 * 179.97438 * 18 17 16 20 20 C 1.34840 * 117.00066 * 174.43731 * 19 18 17 21 21 H 1.07998 * 119.99754 * 5.05999 * 20 19 18 22 22 C 1.38647 * 119.99872 * 185.05754 * 20 19 18 23 23 N 1.31553 * 120.00304 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99819 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47010 * 89.99791 * 24 22 20 26 26 H 1.48496 * 109.47180 * 209.99898 * 24 22 20 27 27 H 1.48498 * 109.46811 * 330.00426 * 24 22 20 28 28 C 1.38616 * 120.01486 * 359.95841 * 18 17 16 29 29 H 1.08999 * 109.47236 * 298.91974 * 1 2 3 30 30 H 1.08995 * 109.47271 * 58.92331 * 1 2 3 31 31 H 1.09007 * 109.47002 * 178.92167 * 1 2 3 32 32 H 1.08998 * 110.61770 * 78.44307 * 5 4 2 33 33 H 1.09000 * 110.61388 * 201.27997 * 5 4 2 34 34 H 1.08999 * 110.90769 * 278.82405 * 6 5 4 35 35 H 1.09005 * 110.90339 * 155.22126 * 6 5 4 36 36 H 0.97001 * 120.00137 * 359.97438 * 11 9 7 37 37 H 1.07993 * 120.00014 * 0.02562 * 13 12 11 38 38 H 1.08002 * 120.01126 * 359.74533 * 15 14 13 39 39 H 1.07992 * 119.88449 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.87440 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00285 * 179.97438 * 23 22 20 42 42 H 1.08001 * 120.11366 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6981 -1.1575 5 6 2.2281 -2.0714 -0.7644 6 6 2.8325 -1.9523 0.6578 7 6 2.0540 -0.7481 1.2412 8 1 1.2237 -1.0909 1.8587 9 6 2.9743 0.1374 2.0412 10 8 3.2028 1.2690 1.6685 11 7 3.5436 -0.3280 3.1707 12 7 4.3988 0.4953 3.9147 13 6 4.9465 0.0475 5.0025 14 6 5.8463 0.9145 5.7861 15 6 6.1113 2.2186 5.3591 16 6 6.9540 3.0269 6.0941 17 6 7.5381 2.5517 7.2536 18 6 7.2815 1.2564 7.6869 19 8 7.8583 0.7950 8.8259 20 6 7.4793 -0.4267 9.2525 21 1 6.8103 -1.0249 8.6517 22 6 7.9485 -0.9148 10.4624 23 7 8.7630 -0.1859 11.1944 24 14 7.4241 -2.6077 11.0531 25 1 8.3836 -3.6253 10.5540 26 1 7.4063 -2.6303 12.5378 27 1 6.0656 -2.9131 10.5369 28 6 6.4366 0.4355 6.9564 29 1 -0.3633 0.4970 0.8995 30 1 -0.3633 0.5304 -0.8801 31 1 -0.3633 -1.0276 -0.0193 32 1 1.2814 -2.6109 -0.7353 33 1 2.9274 -2.5621 -1.4415 34 1 3.9003 -1.7389 0.6101 35 1 2.6432 -2.8557 1.2377 36 1 3.3606 -1.2327 3.4690 37 1 4.7434 -0.9600 5.3341 38 1 5.6602 2.5920 4.4516 39 1 7.1580 4.0342 5.7625 40 1 8.1964 3.1895 7.8248 41 1 9.0910 -0.5273 12.0411 42 1 6.2357 -0.5713 7.2918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842555965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:30 Heat of formation + Delta-G solvation = -65.522227 kcal Electronic energy + Delta-G solvation = -25031.378913 eV Core-core repulsion = 21170.358930 eV Total energy + Delta-G solvation = -3861.019983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63028 -40.77639 -39.69627 -38.53611 -37.29188 -34.45343 -34.10768 -33.23908 -32.19590 -31.23353 -30.30874 -27.91975 -27.27928 -25.13715 -23.46757 -23.24227 -22.63932 -21.68417 -21.18207 -19.90267 -19.06791 -18.38665 -18.06957 -17.22115 -16.97375 -16.74605 -16.31597 -16.18472 -15.96632 -15.65201 -15.51479 -15.25710 -15.05215 -14.39639 -14.33096 -14.16601 -13.98290 -13.75456 -13.50893 -13.15683 -12.91597 -12.88896 -12.52596 -12.47150 -12.45621 -12.39086 -12.08683 -11.99488 -11.89536 -11.41475 -11.30058 -11.03103 -10.84594 -10.64781 -10.54237 -9.36865 -8.96089 -8.42348 -6.11009 -0.20931 0.69858 1.15853 1.32462 1.39911 1.48865 1.57105 1.77282 2.21218 2.83593 2.89523 3.21115 3.28089 3.35395 3.50884 3.63161 3.70562 3.94072 4.05954 4.14748 4.23962 4.26874 4.33110 4.36019 4.40860 4.56115 4.60096 4.63805 4.77440 4.80196 4.87537 4.98843 5.05188 5.11970 5.12818 5.19445 5.25474 5.59674 5.64994 5.65416 5.90459 6.01078 6.04647 6.12239 6.38479 7.02243 7.28687 7.81679 8.80669 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002287 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.567637 B =12241.028785 C =13373.372790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.083 0.917 4 O -0.396 6.396 5 C 0.040 3.960 6 C -0.142 4.142 7 C -0.126 4.126 8 H 0.151 0.849 9 C 0.536 3.464 10 O -0.553 6.553 11 N -0.572 5.572 12 N -0.270 5.270 13 C 0.136 3.864 14 C -0.022 4.022 15 C -0.157 4.157 16 C -0.075 4.075 17 C -0.182 4.182 18 C 0.112 3.888 19 O -0.229 6.229 20 C -0.412 4.412 21 H 0.109 0.891 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.247 1.247 28 C -0.199 4.199 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.406 0.594 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.834 -8.763 -19.100 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.101 0.899 4 O -0.316 6.316 5 C -0.035 4.035 6 C -0.180 4.180 7 C -0.148 4.148 8 H 0.169 0.831 9 C 0.324 3.676 10 O -0.428 6.428 11 N -0.315 5.315 12 N -0.074 5.074 13 C -0.074 4.074 14 C -0.025 4.025 15 C -0.178 4.178 16 C -0.093 4.093 17 C -0.202 4.202 18 C 0.062 3.938 19 O -0.135 6.135 20 C -0.488 4.488 21 H 0.126 0.874 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.170 1.170 28 C -0.220 4.220 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.247 0.753 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.595 -7.107 -19.991 26.936 hybrid contribution 0.244 -1.433 1.439 2.045 sum -16.351 -8.541 -18.552 26.163 Atomic orbital electron populations 1.22230 0.92906 1.03792 1.03143 1.22768 0.95497 0.96916 0.83070 0.89881 1.88938 1.86451 1.22507 1.33711 1.23809 1.01526 0.83398 0.94802 1.23242 0.99718 0.97437 0.97580 1.22860 0.98734 0.95845 0.97380 0.83106 1.21038 0.79828 0.87750 0.78940 1.90706 1.61692 1.21636 1.68781 1.46841 1.45009 1.15534 1.24162 1.74940 1.04255 1.21509 1.06712 1.24545 0.93256 0.98734 0.90869 1.18191 0.96818 0.93797 0.93660 1.21186 1.01521 0.93767 1.01330 1.21001 0.95202 1.00369 0.92723 1.20653 1.05833 0.93706 0.99993 1.19691 0.92670 0.93797 0.87690 1.83989 1.59008 1.34810 1.35741 1.21857 1.30487 0.91167 1.05242 0.87377 1.26587 0.96184 1.04405 0.94986 1.70190 1.32537 1.39672 1.13601 0.84597 0.79573 0.74593 0.77549 1.18970 1.20231 1.17025 1.21241 1.02586 1.01424 0.96790 0.90700 0.91868 0.90202 0.89334 0.87744 0.91516 0.85274 0.75310 0.83138 0.85270 0.83015 0.86212 0.91980 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.30 71.98 0.67 -1.27 16 2 C 0.08 1.33 3.70 30.97 0.11 1.45 16 3 H 0.08 2.06 6.44 -2.39 -0.02 2.04 16 4 O -0.40 -7.66 11.19 -148.98 -1.67 -9.33 16 5 C 0.04 0.41 7.66 72.66 0.56 0.97 16 6 C -0.14 -1.30 6.69 31.89 0.21 -1.08 16 7 C -0.13 -1.66 3.07 -10.55 -0.03 -1.69 16 8 H 0.15 0.92 7.70 -2.39 -0.02 0.90 16 9 C 0.54 12.36 7.13 87.66 0.63 12.99 16 10 O -0.55 -18.71 15.59 -3.11 -0.05 -18.76 16 11 N -0.57 -11.92 6.25 -173.51 -1.08 -13.00 16 12 N -0.27 -7.71 10.15 -52.16 -0.53 -8.24 16 13 C 0.14 3.63 10.75 87.44 0.94 4.57 16 14 C -0.02 -0.75 5.87 -20.15 -0.12 -0.87 16 15 C -0.16 -5.35 9.58 22.58 0.22 -5.13 16 16 C -0.08 -2.54 10.02 22.21 0.22 -2.32 16 17 C -0.18 -7.43 9.98 22.45 0.22 -7.20 16 18 C 0.11 5.25 6.64 22.54 0.15 5.39 16 19 O -0.23 -13.06 9.76 -22.88 -0.22 -13.28 16 20 C -0.41 -22.45 9.48 67.92 0.64 -21.81 16 21 H 0.11 5.21 5.20 -2.91 -0.02 5.19 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -54.87 13.67 21.61 0.30 -54.58 16 24 Si 1.02 40.29 29.55 68.60 2.03 42.32 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 28 C -0.20 -7.90 8.91 22.68 0.20 -7.70 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.61 8.11 -2.38 -0.02 0.59 16 32 H 0.09 0.49 8.11 -2.39 -0.02 0.47 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.88 7.86 -2.39 -0.02 0.86 16 35 H 0.13 0.23 8.14 -2.38 -0.02 0.21 16 36 H 0.41 4.79 8.65 -213.32 -1.85 2.95 16 37 H 0.15 2.84 8.02 -2.91 -0.02 2.82 16 38 H 0.13 4.24 7.55 -2.91 -0.02 4.22 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.14 5.21 5.63 -2.91 -0.02 5.19 16 Total: -1.00 -79.23 362.04 3.08 -76.15 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.79 Total: 23.27 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.09 Total: -24.55 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.32 Total: -75.82 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.94 Total: -41.37 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -79.23 3.08 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842555965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.628 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds