Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.86891 * 2 1 4 4 O 1.43742 * 110.00213 * 121.08969 * 2 1 3 5 5 C 1.44380 * 106.97770 * 146.00781 * 4 2 1 6 6 C 1.54995 * 103.49049 * 319.93633 * 5 4 2 7 7 C 1.54103 * 109.87713 * 238.98920 * 2 1 3 8 8 H 1.09004 * 110.48256 * 119.71839 * 7 2 1 9 9 C 1.50696 * 110.48910 * 357.20956 * 7 2 1 10 10 O 1.21313 * 120.00110 * 265.58810 * 9 7 2 11 11 N 1.34780 * 120.00218 * 85.58161 * 9 7 2 12 12 N 1.40100 * 119.99885 * 179.97438 * 11 9 7 13 13 C 1.29830 * 119.99838 * 180.02562 * 12 11 9 14 14 C 1.47363 * 119.99909 * 179.97438 * 13 12 11 15 15 C 1.39809 * 120.08569 * 359.72639 * 14 13 12 16 16 C 1.37715 * 119.91095 * 179.74047 * 15 14 13 17 17 C 1.39085 * 120.08228 * 0.53200 * 16 15 14 18 18 O 1.35656 * 119.90921 * 179.70027 * 17 16 15 19 19 C 1.34804 * 117.00131 * 185.75317 * 18 17 16 20 20 H 1.07999 * 119.99813 * 354.92732 * 19 18 17 21 21 C 1.38638 * 120.00147 * 174.92357 * 19 18 17 22 22 N 1.31556 * 120.00270 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47189 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47380 * 120.00314 * 23 21 19 26 26 H 1.48502 * 109.47015 * 239.99872 * 23 21 19 27 27 C 1.39078 * 120.17863 * 359.72227 * 17 16 15 28 28 C 1.37718 * 120.08678 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47371 * 185.71140 * 1 2 3 30 30 H 1.08997 * 109.46780 * 305.70604 * 1 2 3 31 31 H 1.08990 * 109.46994 * 65.71101 * 1 2 3 32 32 H 1.08999 * 110.61805 * 78.43677 * 5 4 2 33 33 H 1.08994 * 110.62239 * 201.27468 * 5 4 2 34 34 H 1.08999 * 110.90407 * 278.82859 * 6 5 4 35 35 H 1.09003 * 110.91212 * 155.21794 * 6 5 4 36 36 H 0.96997 * 120.00098 * 0.02562 * 11 9 7 37 37 H 1.07997 * 120.00238 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.04477 * 0.02562 * 15 14 13 39 39 H 1.07994 * 119.95744 * 180.25651 * 16 15 14 40 40 H 0.97000 * 120.00393 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.95414 * 180.02562 * 27 17 16 42 42 H 1.08000 * 120.04326 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6975 1.1567 5 6 3.2418 -1.3610 0.7619 6 6 2.9227 -1.8883 -0.6602 7 6 2.0540 -0.7466 -1.2421 8 1 2.6597 -0.0827 -1.8589 9 6 0.9074 -1.3081 -2.0427 10 8 0.5461 -2.4524 -1.8646 11 7 0.2831 -0.5389 -2.9566 12 7 -0.7825 -1.0611 -3.7013 13 6 -1.3835 -0.3203 -4.5819 14 6 -2.5041 -0.8698 -5.3656 15 6 -2.9177 -2.1903 -5.1663 16 6 -3.9687 -2.6984 -5.8968 17 6 -4.6112 -1.9032 -6.8397 18 8 -5.6422 -2.4092 -7.5617 19 6 -6.1444 -1.6302 -8.5406 20 1 -5.7815 -0.6209 -8.6672 21 6 -7.1268 -2.1246 -9.3847 22 7 -7.5685 -3.3542 -9.2309 23 14 -7.8221 -1.0452 -10.7416 24 1 -7.1622 0.2845 -10.7035 25 1 -7.5736 -1.6842 -12.0588 26 1 -9.2840 -0.8778 -10.5407 27 6 -4.1993 -0.5907 -7.0448 28 6 -3.1524 -0.0736 -6.3145 29 1 -0.3634 -1.0225 0.1023 30 1 -0.3633 0.5998 0.8345 31 1 -0.3633 0.4227 -0.9366 32 1 4.0708 -0.6539 0.7321 33 1 3.4664 -2.1856 1.4383 34 1 2.3591 -2.8200 -0.6121 35 1 3.8359 -2.0171 -1.2413 36 1 0.5721 0.3760 -3.0993 37 1 -1.0623 0.6986 -4.7402 38 1 -2.4166 -2.8097 -4.4370 39 1 -4.2915 -3.7171 -5.7405 40 1 -8.2556 -3.7002 -9.8217 41 1 -4.7011 0.0237 -7.7776 42 1 -2.8329 0.9455 -6.4746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842557822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = -39.332241 kcal Electronic energy + Delta-G solvation = -25051.256184 eV Core-core repulsion = 21191.371885 eV Total energy + Delta-G solvation = -3859.884300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86328 -39.15820 -38.63823 -37.09958 -35.83628 -33.28063 -32.53536 -31.98698 -31.59364 -30.34790 -28.60092 -26.70750 -25.63052 -23.60718 -22.56663 -22.33174 -21.82193 -20.43690 -19.87209 -18.19059 -17.58072 -17.40159 -16.85327 -16.64280 -16.10063 -15.53656 -15.11348 -14.99273 -14.62841 -14.39286 -14.13295 -13.79220 -13.57365 -13.37049 -12.85283 -12.78608 -12.70112 -12.50949 -12.48681 -12.43795 -11.80922 -11.62627 -11.40466 -11.34069 -11.27720 -11.23644 -10.95750 -10.79714 -10.51932 -10.33019 -10.06158 -9.81497 -9.45673 -9.25317 -8.77344 -8.31244 -7.14294 -6.60191 -4.16599 1.32400 2.18801 2.38796 2.43533 2.96866 3.05865 3.11875 3.12475 3.41922 3.85056 3.95138 4.16892 4.38018 4.53931 4.60778 4.73333 4.80870 4.84533 4.93110 4.97351 5.07537 5.09887 5.17157 5.20335 5.33959 5.46717 5.54023 5.58528 5.73117 5.77346 5.90980 5.92228 6.12292 6.32093 6.47012 6.59976 6.78206 6.93953 7.00776 7.16324 7.18082 7.30401 7.58859 7.68292 7.84868 8.41494 8.84556 9.52360 10.56725 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.043466 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.023827 B =14537.998146 C =14775.903778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.079 0.921 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.141 4.141 8 H 0.105 0.895 9 C 0.544 3.456 10 O -0.501 6.501 11 N -0.588 5.588 12 N -0.267 5.267 13 C 0.151 3.849 14 C -0.174 4.174 15 C -0.025 4.025 16 C -0.201 4.201 17 C 0.170 3.830 18 O -0.165 6.165 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.040 3.960 22 N -0.853 5.853 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.377 0.623 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.132 0.868 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.084 10.372 12.882 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.032 3.968 3 H 0.097 0.903 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.164 4.164 8 H 0.123 0.877 9 C 0.330 3.670 10 O -0.373 6.373 11 N -0.329 5.329 12 N -0.073 5.073 13 C -0.057 4.057 14 C -0.179 4.179 15 C -0.045 4.045 16 C -0.221 4.221 17 C 0.113 3.887 18 O -0.066 6.066 19 C -0.468 4.468 20 H 0.114 0.886 21 C -0.166 4.166 22 N -0.487 5.487 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.261 4.261 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.215 0.785 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.580 8.301 13.646 24.501 hybrid contribution 0.053 2.052 -1.396 2.483 sum 18.633 10.353 12.250 24.585 Atomic orbital electron populations 1.22161 0.93185 1.04235 1.02868 1.22597 0.95657 0.95161 0.83345 0.90307 1.88931 1.39664 1.67757 1.32344 1.23572 0.87479 0.96576 0.95219 1.23186 0.99818 0.99153 0.95955 1.22841 0.96076 0.99751 0.97729 0.87669 1.19894 0.82752 0.85828 0.78496 1.90724 1.64202 1.17522 1.64843 1.47041 1.32410 1.14642 1.38848 1.75162 0.99973 1.24985 1.07175 1.24446 0.93610 0.95791 0.91807 1.17779 1.00469 0.95778 1.03839 1.20906 0.93777 0.93804 0.95994 1.20206 1.00086 1.00500 1.01257 1.19598 0.86749 0.91652 0.90705 1.83946 1.39048 1.42764 1.40849 1.21477 1.20633 0.96791 1.07943 0.88555 1.25377 0.96252 0.96660 0.98272 1.70047 1.26988 1.14533 1.37086 0.85592 0.78914 0.79170 0.79445 1.18931 1.19987 1.19999 1.21042 1.02351 0.96586 1.06158 1.20775 0.93851 0.97749 0.93082 0.90822 0.91238 0.90980 0.91940 0.88413 0.88044 0.89554 0.78545 0.87653 0.85689 0.86084 0.91731 0.85053 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 8.42 37.16 0.31 -1.34 16 2 C 0.09 0.77 4.05 -26.15 -0.11 0.66 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 O -0.37 -3.75 11.19 -35.23 -0.39 -4.14 16 5 C 0.05 0.34 7.72 38.21 0.29 0.64 16 6 C -0.14 -1.15 6.64 -24.72 -0.16 -1.32 16 7 C -0.14 -1.17 3.43 -90.24 -0.31 -1.48 16 8 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 9 C 0.54 6.82 5.02 -10.99 -0.06 6.76 16 10 O -0.50 -8.63 15.72 5.53 0.09 -8.54 16 11 N -0.59 -6.85 5.15 31.22 0.16 -6.69 16 12 N -0.27 -4.06 10.15 32.14 0.33 -3.73 16 13 C 0.15 2.07 10.74 -14.69 -0.16 1.91 16 14 C -0.17 -2.92 5.87 -105.01 -0.62 -3.53 16 15 C -0.02 -0.46 9.57 -39.19 -0.37 -0.83 16 16 C -0.20 -4.21 9.97 -39.46 -0.39 -4.60 16 17 C 0.17 3.92 6.65 -38.96 -0.26 3.66 16 18 O -0.17 -4.52 9.75 0.41 0.00 -4.52 16 19 C -0.39 -10.43 9.48 30.88 0.29 -10.13 16 20 H 0.10 2.33 5.19 -52.49 -0.27 2.06 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.85 -24.13 13.67 55.48 0.76 -23.37 16 23 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.24 -4.86 9.15 -39.46 -0.36 -5.22 16 28 C -0.03 -0.56 9.78 -39.18 -0.38 -0.94 16 29 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.68 6.52 -51.93 -0.34 0.34 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.09 6.82 -51.93 -0.35 0.73 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.38 2.90 8.65 -182.60 -1.58 1.32 16 37 H 0.11 1.04 8.02 -52.49 -0.42 0.62 16 38 H 0.13 2.28 7.55 -52.48 -0.40 1.88 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.13 2.60 5.62 -52.49 -0.29 2.30 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.35 357.67 -7.63 -40.98 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.57 Total: 4.92 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.38 Total: -14.80 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 1.25 Total: -33.79 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.30 Total: -17.21 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.35 -7.63 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.653 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds