Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.86891 * 2 1 4 4 O 1.43742 * 110.00213 * 121.08969 * 2 1 3 5 5 C 1.44380 * 106.97770 * 146.00781 * 4 2 1 6 6 C 1.54995 * 103.49049 * 319.93633 * 5 4 2 7 7 C 1.54103 * 109.87713 * 238.98920 * 2 1 3 8 8 H 1.09004 * 110.48256 * 119.71839 * 7 2 1 9 9 C 1.50696 * 110.48910 * 357.20956 * 7 2 1 10 10 O 1.21313 * 120.00110 * 265.58810 * 9 7 2 11 11 N 1.34780 * 120.00218 * 85.58161 * 9 7 2 12 12 N 1.40100 * 119.99885 * 179.97438 * 11 9 7 13 13 C 1.29830 * 119.99838 * 180.02562 * 12 11 9 14 14 C 1.47363 * 119.99909 * 179.97438 * 13 12 11 15 15 C 1.39809 * 120.08569 * 359.72639 * 14 13 12 16 16 C 1.37715 * 119.91095 * 179.74047 * 15 14 13 17 17 C 1.39085 * 120.08228 * 0.53200 * 16 15 14 18 18 O 1.35656 * 119.90921 * 179.70027 * 17 16 15 19 19 C 1.34804 * 117.00131 * 185.75317 * 18 17 16 20 20 H 1.07999 * 119.99813 * 354.92732 * 19 18 17 21 21 C 1.38638 * 120.00147 * 174.92357 * 19 18 17 22 22 N 1.31556 * 120.00270 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47189 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47380 * 120.00314 * 23 21 19 26 26 H 1.48502 * 109.47015 * 239.99872 * 23 21 19 27 27 C 1.39078 * 120.17863 * 359.72227 * 17 16 15 28 28 C 1.37718 * 120.08678 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47371 * 185.71140 * 1 2 3 30 30 H 1.08997 * 109.46780 * 305.70604 * 1 2 3 31 31 H 1.08990 * 109.46994 * 65.71101 * 1 2 3 32 32 H 1.08999 * 110.61805 * 78.43677 * 5 4 2 33 33 H 1.08994 * 110.62239 * 201.27468 * 5 4 2 34 34 H 1.08999 * 110.90407 * 278.82859 * 6 5 4 35 35 H 1.09003 * 110.91212 * 155.21794 * 6 5 4 36 36 H 0.96997 * 120.00098 * 0.02562 * 11 9 7 37 37 H 1.07997 * 120.00238 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.04477 * 0.02562 * 15 14 13 39 39 H 1.07994 * 119.95744 * 180.25651 * 16 15 14 40 40 H 0.97000 * 120.00393 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.95414 * 180.02562 * 27 17 16 42 42 H 1.08000 * 120.04326 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6975 1.1567 5 6 3.2418 -1.3610 0.7619 6 6 2.9227 -1.8883 -0.6602 7 6 2.0540 -0.7466 -1.2421 8 1 2.6597 -0.0827 -1.8589 9 6 0.9074 -1.3081 -2.0427 10 8 0.5461 -2.4524 -1.8646 11 7 0.2831 -0.5389 -2.9566 12 7 -0.7825 -1.0611 -3.7013 13 6 -1.3835 -0.3203 -4.5819 14 6 -2.5041 -0.8698 -5.3656 15 6 -2.9177 -2.1903 -5.1663 16 6 -3.9687 -2.6984 -5.8968 17 6 -4.6112 -1.9032 -6.8397 18 8 -5.6422 -2.4092 -7.5617 19 6 -6.1444 -1.6302 -8.5406 20 1 -5.7815 -0.6209 -8.6672 21 6 -7.1268 -2.1246 -9.3847 22 7 -7.5685 -3.3542 -9.2309 23 14 -7.8221 -1.0452 -10.7416 24 1 -7.1622 0.2845 -10.7035 25 1 -7.5736 -1.6842 -12.0588 26 1 -9.2840 -0.8778 -10.5407 27 6 -4.1993 -0.5907 -7.0448 28 6 -3.1524 -0.0736 -6.3145 29 1 -0.3634 -1.0225 0.1023 30 1 -0.3633 0.5998 0.8345 31 1 -0.3633 0.4227 -0.9366 32 1 4.0708 -0.6539 0.7321 33 1 3.4664 -2.1856 1.4383 34 1 2.3591 -2.8200 -0.6121 35 1 3.8359 -2.0171 -1.2413 36 1 0.5721 0.3760 -3.0993 37 1 -1.0623 0.6986 -4.7402 38 1 -2.4166 -2.8097 -4.4370 39 1 -4.2915 -3.7171 -5.7405 40 1 -8.2556 -3.7002 -9.8217 41 1 -4.7011 0.0237 -7.7776 42 1 -2.8329 0.9455 -6.4746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842557822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = -63.173575 kcal Electronic energy + Delta-G solvation = -25052.290022 eV Core-core repulsion = 21191.371885 eV Total energy + Delta-G solvation = -3860.918137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68161 -40.80247 -39.54181 -38.58986 -37.13918 -34.45856 -34.07826 -32.92238 -32.42268 -31.90881 -30.02678 -27.59881 -27.31096 -24.77309 -23.75182 -23.19958 -23.05112 -21.66704 -20.91090 -19.90030 -18.96451 -18.30206 -18.04495 -17.61636 -16.78033 -16.49378 -16.35241 -16.22486 -15.99587 -15.92295 -15.58307 -15.11907 -15.07631 -14.48379 -14.15647 -14.06778 -13.74216 -13.55749 -13.48511 -13.41652 -13.13406 -12.92384 -12.74105 -12.50122 -12.41209 -12.23056 -12.06537 -12.01892 -11.90662 -11.33095 -11.18016 -10.99884 -10.89713 -10.61215 -10.19499 -9.84845 -8.71483 -8.48931 -6.16281 0.00480 0.61331 1.23036 1.38110 1.46957 1.48584 1.56906 1.87302 2.17681 2.81927 2.87912 3.19785 3.24293 3.44884 3.47903 3.72431 3.80992 3.99350 4.04981 4.16321 4.16853 4.23607 4.27627 4.34291 4.48966 4.52539 4.54475 4.64788 4.80382 4.82844 4.88603 4.90011 5.00110 5.11062 5.13330 5.17049 5.26709 5.55435 5.65233 5.65699 5.88667 6.00535 6.11457 6.14278 6.56243 6.95270 7.46031 7.73720 8.73935 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.043466 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.023827 B =14537.998146 C =14775.903778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.118 0.882 4 O -0.398 6.398 5 C 0.048 3.952 6 C -0.146 4.146 7 C -0.132 4.132 8 H 0.152 0.848 9 C 0.540 3.460 10 O -0.558 6.558 11 N -0.573 5.573 12 N -0.301 5.301 13 C 0.155 3.845 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.216 4.216 17 C 0.134 3.866 18 O -0.226 6.226 19 C -0.413 4.413 20 H 0.113 0.887 21 C -0.025 4.025 22 N -0.919 5.919 23 Si 1.022 2.978 24 H -0.244 1.244 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.245 4.245 28 C -0.018 4.018 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.404 0.596 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.273 0.727 41 H 0.134 0.866 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.889 15.161 13.491 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.135 0.865 4 O -0.318 6.318 5 C -0.028 4.028 6 C -0.184 4.184 7 C -0.155 4.155 8 H 0.170 0.830 9 C 0.329 3.671 10 O -0.433 6.433 11 N -0.317 5.317 12 N -0.107 5.107 13 C -0.053 4.053 14 C -0.154 4.154 15 C -0.051 4.051 16 C -0.235 4.235 17 C 0.081 3.919 18 O -0.130 6.130 19 C -0.489 4.489 20 H 0.130 0.870 21 C -0.223 4.223 22 N -0.557 5.557 23 Si 0.841 3.159 24 H -0.167 1.167 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.264 4.264 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.245 0.755 37 H 0.179 0.821 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 22.452 13.149 14.293 29.687 hybrid contribution -0.712 0.612 -1.179 1.507 sum 21.741 13.761 13.115 28.880 Atomic orbital electron populations 1.22154 0.94974 1.01764 1.03515 1.22779 0.94315 0.96799 0.82808 0.86465 1.88903 1.41120 1.68369 1.33402 1.23756 0.87303 0.97318 0.94420 1.23203 1.00344 0.97608 0.97287 1.22973 0.94569 1.00315 0.97601 0.83019 1.20827 0.83094 0.85153 0.78047 1.90713 1.65932 1.20260 1.66439 1.46857 1.31126 1.15823 1.37899 1.75033 1.00898 1.27399 1.07322 1.24452 0.92177 0.97844 0.90822 1.18209 1.00142 0.94441 1.02608 1.21022 0.93073 0.95335 0.95718 1.20311 1.01105 1.00291 1.01824 1.20081 0.87094 0.93487 0.91198 1.83929 1.41800 1.44432 1.42888 1.22004 1.21049 0.97531 1.08287 0.87000 1.26697 0.96518 0.98157 1.00885 1.70203 1.28982 1.17167 1.39325 0.84474 0.78033 0.77817 0.75549 1.16669 1.19630 1.19623 1.21244 1.03307 0.95222 1.06670 1.21229 0.91626 0.99908 0.91021 0.94861 0.90492 0.90355 0.88788 0.88200 0.91740 0.86991 0.75511 0.82149 0.85608 0.87366 0.91766 0.84838 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 8.42 71.98 0.61 -2.39 16 2 C 0.09 1.22 4.05 30.97 0.13 1.34 16 3 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 4 O -0.40 -7.21 11.19 -148.98 -1.67 -8.88 16 5 C 0.05 0.55 7.72 72.66 0.56 1.11 16 6 C -0.15 -2.02 6.64 31.90 0.21 -1.80 16 7 C -0.13 -1.69 3.43 -10.55 -0.04 -1.73 16 8 H 0.15 0.58 8.14 -2.38 -0.02 0.56 16 9 C 0.54 12.34 5.02 87.66 0.44 12.78 16 10 O -0.56 -19.34 15.72 -3.13 -0.05 -19.39 16 11 N -0.57 -11.16 5.15 -173.50 -0.89 -12.05 16 12 N -0.30 -8.19 10.15 -52.22 -0.53 -8.72 16 13 C 0.16 3.49 10.74 87.39 0.94 4.43 16 14 C -0.15 -4.56 5.87 -20.12 -0.12 -4.68 16 15 C -0.03 -1.16 9.57 22.53 0.22 -0.95 16 16 C -0.22 -9.53 9.97 22.35 0.22 -9.31 16 17 C 0.13 6.48 6.65 22.67 0.15 6.63 16 18 O -0.23 -13.26 9.75 -21.45 -0.21 -13.47 16 19 C -0.41 -23.04 9.48 67.92 0.64 -22.40 16 20 H 0.11 5.54 5.19 -2.91 -0.02 5.52 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 22 N -0.92 -55.64 13.67 21.61 0.30 -55.34 16 23 Si 1.02 41.12 29.55 68.60 2.03 43.14 16 24 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 27 C -0.25 -9.64 9.15 22.35 0.20 -9.43 16 28 C -0.02 -0.52 9.78 22.53 0.22 -0.30 16 29 H 0.03 0.86 7.54 -2.39 -0.02 0.84 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.25 6.52 -2.39 -0.02 1.23 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.40 6.82 -2.39 -0.02 1.38 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.40 3.87 8.65 -213.32 -1.85 2.03 16 37 H 0.16 1.88 8.02 -2.91 -0.02 1.86 16 38 H 0.13 4.64 7.55 -2.91 -0.02 4.62 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.13 5.15 5.62 -2.91 -0.02 5.13 16 42 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -83.28 357.67 3.04 -80.24 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.79 Total: 22.05 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.85 Total: -27.57 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.13 Total: -76.11 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.93 Total: -41.74 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -83.28 3.04 -80.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.062 kcal (2) G-P(sol) polarization free energy of solvation -83.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds