Wall clock time and date at job start Tue Mar 31 2020 12:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.33129 * 2 1 4 4 O 1.44432 * 110.37173 * 237.75485 * 2 1 3 5 5 C 1.44426 * 105.27289 * 200.65426 * 4 2 1 6 6 C 1.54477 * 104.80235 * 40.51306 * 5 4 2 7 7 C 1.54475 * 110.37338 * 122.37246 * 2 1 3 8 8 H 1.08999 * 110.51092 * 261.44908 * 7 2 1 9 9 C 1.50696 * 110.51036 * 24.16711 * 7 2 1 10 10 O 1.21311 * 120.00455 * 94.08985 * 9 7 2 11 11 N 1.34781 * 119.99887 * 274.08152 * 9 7 2 12 12 N 1.40095 * 120.00067 * 180.02562 * 11 9 7 13 13 C 1.29830 * 120.00155 * 180.02562 * 12 11 9 14 14 C 1.47358 * 120.00340 * 180.02562 * 13 12 11 15 15 C 1.39808 * 120.08406 * 359.71375 * 14 13 12 16 16 C 1.37720 * 119.90899 * 179.72021 * 15 14 13 17 17 C 1.39075 * 120.08747 * 0.58893 * 16 15 14 18 18 O 1.35650 * 119.91230 * 179.71542 * 17 16 15 19 19 C 1.34808 * 116.99991 * 185.78976 * 18 17 16 20 20 H 1.08000 * 120.00289 * 354.92175 * 19 18 17 21 21 C 1.38637 * 120.00261 * 174.91302 * 19 18 17 22 22 N 1.31560 * 120.00701 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99811 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47118 * 89.99734 * 23 21 19 25 25 H 1.48503 * 109.47188 * 209.99905 * 23 21 19 26 26 H 1.48494 * 109.47066 * 329.99783 * 23 21 19 27 27 C 1.39087 * 120.17319 * 359.68797 * 17 16 15 28 28 C 1.37710 * 120.08926 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47243 * 175.99413 * 1 2 3 30 30 H 1.08998 * 109.47446 * 55.99596 * 1 2 3 31 31 H 1.08994 * 109.47004 * 295.99281 * 1 2 3 32 32 H 1.09004 * 110.36744 * 159.34159 * 5 4 2 33 33 H 1.08995 * 110.37540 * 281.56800 * 5 4 2 34 34 H 1.09000 * 110.51572 * 94.66869 * 6 5 4 35 35 H 1.09004 * 110.51244 * 217.23694 * 6 5 4 36 36 H 0.97001 * 119.99519 * 0.02562 * 11 9 7 37 37 H 1.08008 * 119.99863 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.04802 * 0.02562 * 15 14 13 39 39 H 1.08006 * 119.95485 * 180.29946 * 16 15 14 40 40 H 0.96995 * 120.00746 * 179.97438 * 22 21 19 41 41 H 1.08001 * 119.94870 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.04283 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7224 -1.1452 5 6 3.3874 -1.0862 -0.8008 6 6 3.3178 -1.5064 0.6841 7 6 2.0678 -0.7753 1.2231 8 1 2.3430 -0.0861 2.0213 9 6 1.0444 -1.7684 1.7103 10 8 1.0815 -2.9174 1.3228 11 7 0.0880 -1.3802 2.5770 12 7 -0.8631 -2.3035 3.0304 13 6 -1.7847 -1.9294 3.8648 14 6 -2.7848 -2.9007 4.3423 15 6 -2.7464 -4.2241 3.8932 16 6 -3.6793 -5.1303 4.3462 17 6 -4.6660 -4.7274 5.2397 18 8 -5.5866 -5.6216 5.6791 19 6 -6.5859 -5.1436 6.4475 20 1 -6.5828 -4.1083 6.7549 21 6 -7.6176 -5.9810 6.8429 22 7 -8.5930 -5.5146 7.5924 23 14 -7.6227 -7.7719 6.3116 24 1 -6.9041 -8.5899 7.3215 25 1 -9.0239 -8.2494 6.1940 26 1 -6.9441 -7.9002 4.9971 27 6 -4.7110 -3.4103 5.6843 28 6 -3.7782 -2.4996 5.2405 29 1 -0.3634 -1.0251 -0.0718 30 1 -0.3634 0.5747 -0.8519 31 1 -0.3633 0.4504 0.9237 32 1 3.7241 -1.9207 -1.4159 33 1 4.0528 -0.2319 -0.9243 34 1 3.1956 -2.5861 0.7703 35 1 4.2120 -1.1807 1.2156 36 1 0.0582 -0.4614 2.8867 37 1 -1.8179 -0.9064 4.2097 38 1 -1.9832 -4.5367 3.1958 39 1 -3.6474 -6.1541 4.0035 40 1 -9.3150 -6.1004 7.8688 41 1 -5.4786 -3.1015 6.3784 42 1 -3.8136 -1.4772 5.5866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842557825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:40 Heat of formation + Delta-G solvation = -37.740126 kcal Electronic energy + Delta-G solvation = -25137.332694 eV Core-core repulsion = 21277.517434 eV Total energy + Delta-G solvation = -3859.815260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.86325 -39.30790 -38.60317 -37.21636 -35.91200 -33.31711 -32.58395 -32.08218 -31.63621 -30.43915 -28.78135 -26.81052 -25.59527 -23.56743 -22.50958 -22.30091 -21.91162 -20.47966 -19.90681 -18.13150 -17.73647 -17.45398 -16.93119 -16.69783 -15.95378 -15.73692 -15.16634 -14.98815 -14.80520 -14.27783 -14.03522 -13.82707 -13.76569 -13.43283 -12.84626 -12.80027 -12.63527 -12.58190 -12.43850 -12.36580 -12.32153 -11.66892 -11.49598 -11.38931 -11.33858 -11.30109 -10.90563 -10.82112 -10.35390 -10.28119 -10.08633 -9.85116 -9.50901 -9.26831 -8.82926 -8.39436 -7.26191 -6.55391 -4.20286 1.25163 2.09537 2.35505 2.41081 2.96093 3.18118 3.20037 3.34390 3.44907 3.96270 4.13914 4.15351 4.34977 4.46520 4.61037 4.68642 4.70196 4.80153 4.86563 4.87608 4.98667 4.99776 5.06702 5.13300 5.37778 5.40077 5.48024 5.49104 5.65926 5.73692 5.79913 5.86088 6.03225 6.22407 6.41173 6.45852 6.69218 6.92928 7.01232 7.08379 7.13530 7.46762 7.56258 7.66590 7.89208 8.38573 8.78597 9.39191 10.51002 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.002032 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.521201 B =13775.444454 C =14111.628748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.087 3.913 3 H 0.083 0.917 4 O -0.364 6.364 5 C 0.048 3.952 6 C -0.145 4.145 7 C -0.139 4.139 8 H 0.107 0.893 9 C 0.542 3.458 10 O -0.500 6.500 11 N -0.587 5.587 12 N -0.264 5.264 13 C 0.148 3.852 14 C -0.165 4.165 15 C -0.027 4.027 16 C -0.201 4.201 17 C 0.176 3.824 18 O -0.206 6.206 19 C -0.391 4.391 20 H 0.110 0.890 21 C 0.065 3.935 22 N -0.870 5.870 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.258 1.258 27 C -0.229 4.229 28 C -0.036 4.036 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.377 0.623 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.282 0.718 41 H 0.138 0.862 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.281 14.032 -10.481 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.029 3.971 3 H 0.100 0.900 4 O -0.283 6.283 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.163 4.163 8 H 0.125 0.875 9 C 0.328 3.672 10 O -0.371 6.371 11 N -0.329 5.329 12 N -0.069 5.069 13 C -0.060 4.060 14 C -0.169 4.169 15 C -0.047 4.047 16 C -0.220 4.220 17 C 0.121 3.879 18 O -0.108 6.108 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.139 4.139 22 N -0.507 5.507 23 Si 0.731 3.269 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.181 1.181 27 C -0.249 4.249 28 C -0.057 4.057 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.215 0.785 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.439 12.188 -11.467 26.415 hybrid contribution -0.321 0.821 0.888 1.252 sum 20.118 13.009 -10.579 26.189 Atomic orbital electron populations 1.21993 0.92782 1.03983 1.02765 1.22889 0.95739 0.94971 0.83538 0.89956 1.89207 1.27268 1.74468 1.37344 1.23408 0.84473 1.00027 0.95014 1.22999 0.95768 1.03466 0.96060 1.22804 0.95625 0.97709 1.00140 0.87517 1.19965 0.80550 0.89098 0.77539 1.90719 1.72220 1.19457 1.54745 1.47040 1.29026 1.10584 1.46217 1.75122 1.00940 1.17139 1.13739 1.24437 0.91880 0.97434 0.92254 1.17844 0.99224 0.93243 1.06557 1.20916 0.96036 0.91606 0.96150 1.20204 0.98223 1.00632 1.02955 1.19344 0.89008 0.88605 0.90898 1.83545 1.33129 1.34609 1.59541 1.20835 0.99214 0.99168 1.27363 0.87243 1.24516 0.93751 1.00272 0.95403 1.69635 1.10378 1.37265 1.33402 0.86167 0.77612 0.82570 0.80568 1.19694 1.20626 1.18147 1.21162 1.03337 0.93489 1.06891 1.20828 0.92401 0.98374 0.94056 0.91017 0.91019 0.91152 0.88625 0.92055 0.88313 0.89753 0.78499 0.87491 0.85517 0.86080 0.90770 0.84440 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.42 37.16 0.31 -1.06 16 2 C 0.09 0.70 3.83 -25.96 -0.10 0.60 16 3 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 4 O -0.36 -3.87 11.34 -35.23 -0.40 -4.27 16 5 C 0.05 0.36 7.63 37.93 0.29 0.65 16 6 C -0.14 -1.12 6.62 -25.16 -0.17 -1.29 16 7 C -0.14 -1.12 3.43 -90.21 -0.31 -1.43 16 8 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 9 C 0.54 6.74 5.24 -10.99 -0.06 6.68 16 10 O -0.50 -8.63 15.86 5.53 0.09 -8.54 16 11 N -0.59 -6.68 5.39 31.22 0.17 -6.52 16 12 N -0.26 -3.90 10.15 32.14 0.33 -3.58 16 13 C 0.15 1.96 10.74 -14.69 -0.16 1.80 16 14 C -0.16 -2.66 5.87 -105.01 -0.62 -3.27 16 15 C -0.03 -0.48 9.57 -39.18 -0.37 -0.85 16 16 C -0.20 -3.93 9.97 -39.46 -0.39 -4.32 16 17 C 0.18 3.88 6.65 -38.96 -0.26 3.62 16 18 O -0.21 -5.19 8.58 0.42 0.00 -5.19 16 19 C -0.39 -10.48 9.94 30.88 0.31 -10.18 16 20 H 0.11 2.96 5.42 -52.49 -0.28 2.68 16 21 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 22 N -0.87 -24.12 13.96 55.48 0.77 -23.34 16 23 Si 0.91 20.94 28.62 -169.99 -4.86 16.07 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 27 C -0.23 -4.56 9.15 -39.46 -0.36 -4.92 16 28 C -0.04 -0.58 9.78 -39.19 -0.38 -0.97 16 29 H 0.07 0.87 7.10 -51.93 -0.37 0.50 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.47 7.16 -51.93 -0.37 0.10 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 1.02 6.72 -51.93 -0.35 0.67 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 2.80 8.17 -182.60 -1.49 1.30 16 37 H 0.11 1.01 8.02 -52.48 -0.42 0.59 16 38 H 0.13 2.19 7.55 -52.48 -0.40 1.80 16 39 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.14 2.83 5.62 -52.49 -0.30 2.54 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -32.79 356.61 -7.39 -40.18 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.50 Total: 3.07 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.37 Total: -13.26 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 1.27 Total: -33.44 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.31 Total: -18.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.86 Total: 16.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.79 -7.39 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.439 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds