Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.33129 * 2 1 4 4 O 1.44432 * 110.37173 * 237.75485 * 2 1 3 5 5 C 1.44426 * 105.27289 * 200.65426 * 4 2 1 6 6 C 1.54477 * 104.80235 * 40.51306 * 5 4 2 7 7 C 1.54475 * 110.37338 * 122.37246 * 2 1 3 8 8 H 1.08999 * 110.51092 * 261.44908 * 7 2 1 9 9 C 1.50696 * 110.51036 * 24.16711 * 7 2 1 10 10 O 1.21311 * 120.00455 * 94.08985 * 9 7 2 11 11 N 1.34781 * 119.99887 * 274.08152 * 9 7 2 12 12 N 1.40095 * 120.00067 * 180.02562 * 11 9 7 13 13 C 1.29830 * 120.00155 * 180.02562 * 12 11 9 14 14 C 1.47358 * 120.00340 * 180.02562 * 13 12 11 15 15 C 1.39808 * 120.08406 * 359.71375 * 14 13 12 16 16 C 1.37720 * 119.90899 * 179.72021 * 15 14 13 17 17 C 1.39075 * 120.08747 * 0.58893 * 16 15 14 18 18 O 1.35650 * 119.91230 * 179.71542 * 17 16 15 19 19 C 1.34808 * 116.99991 * 185.78976 * 18 17 16 20 20 H 1.08000 * 120.00289 * 354.92175 * 19 18 17 21 21 C 1.38637 * 120.00261 * 174.91302 * 19 18 17 22 22 N 1.31560 * 120.00701 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99811 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47118 * 89.99734 * 23 21 19 25 25 H 1.48503 * 109.47188 * 209.99905 * 23 21 19 26 26 H 1.48494 * 109.47066 * 329.99783 * 23 21 19 27 27 C 1.39087 * 120.17319 * 359.68797 * 17 16 15 28 28 C 1.37710 * 120.08926 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47243 * 175.99413 * 1 2 3 30 30 H 1.08998 * 109.47446 * 55.99596 * 1 2 3 31 31 H 1.08994 * 109.47004 * 295.99281 * 1 2 3 32 32 H 1.09004 * 110.36744 * 159.34159 * 5 4 2 33 33 H 1.08995 * 110.37540 * 281.56800 * 5 4 2 34 34 H 1.09000 * 110.51572 * 94.66869 * 6 5 4 35 35 H 1.09004 * 110.51244 * 217.23694 * 6 5 4 36 36 H 0.97001 * 119.99519 * 0.02562 * 11 9 7 37 37 H 1.08008 * 119.99863 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.04802 * 0.02562 * 15 14 13 39 39 H 1.08006 * 119.95485 * 180.29946 * 16 15 14 40 40 H 0.96995 * 120.00746 * 179.97438 * 22 21 19 41 41 H 1.08001 * 119.94870 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.04283 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7224 -1.1452 5 6 3.3874 -1.0862 -0.8008 6 6 3.3178 -1.5064 0.6841 7 6 2.0678 -0.7753 1.2231 8 1 2.3430 -0.0861 2.0213 9 6 1.0444 -1.7684 1.7103 10 8 1.0815 -2.9174 1.3228 11 7 0.0880 -1.3802 2.5770 12 7 -0.8631 -2.3035 3.0304 13 6 -1.7847 -1.9294 3.8648 14 6 -2.7848 -2.9007 4.3423 15 6 -2.7464 -4.2241 3.8932 16 6 -3.6793 -5.1303 4.3462 17 6 -4.6660 -4.7274 5.2397 18 8 -5.5866 -5.6216 5.6791 19 6 -6.5859 -5.1436 6.4475 20 1 -6.5828 -4.1083 6.7549 21 6 -7.6176 -5.9810 6.8429 22 7 -8.5930 -5.5146 7.5924 23 14 -7.6227 -7.7719 6.3116 24 1 -6.9041 -8.5899 7.3215 25 1 -9.0239 -8.2494 6.1940 26 1 -6.9441 -7.9002 4.9971 27 6 -4.7110 -3.4103 5.6843 28 6 -3.7782 -2.4996 5.2405 29 1 -0.3634 -1.0251 -0.0718 30 1 -0.3634 0.5747 -0.8519 31 1 -0.3633 0.4504 0.9237 32 1 3.7241 -1.9207 -1.4159 33 1 4.0528 -0.2319 -0.9243 34 1 3.1956 -2.5861 0.7703 35 1 4.2120 -1.1807 1.2156 36 1 0.0582 -0.4614 2.8867 37 1 -1.8179 -0.9064 4.2097 38 1 -1.9832 -4.5367 3.1958 39 1 -3.6474 -6.1541 4.0035 40 1 -9.3150 -6.1004 7.8688 41 1 -5.4786 -3.1015 6.3784 42 1 -3.8136 -1.4772 5.5866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842557825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = -60.750786 kcal Electronic energy + Delta-G solvation = -25138.330511 eV Core-core repulsion = 21277.517434 eV Total energy + Delta-G solvation = -3860.813077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65436 -40.92327 -39.49350 -38.66985 -37.16468 -34.55045 -34.14799 -32.96023 -32.40986 -31.94760 -30.16561 -27.63057 -27.26696 -24.70044 -23.77807 -23.16046 -22.98542 -21.64441 -20.94356 -19.86728 -19.16434 -18.44877 -18.07598 -17.53249 -16.68319 -16.54315 -16.48989 -16.34094 -15.94035 -15.76404 -15.56414 -15.32979 -15.11346 -14.39118 -14.16781 -14.13644 -14.03856 -13.78221 -13.45984 -13.30151 -13.01715 -12.98031 -12.83050 -12.55495 -12.47544 -12.29661 -12.01434 -11.99617 -11.92651 -11.38018 -11.19521 -11.01922 -10.97392 -10.66465 -10.24837 -9.87890 -8.77652 -8.51794 -6.23004 -0.04055 0.57466 1.21460 1.32553 1.36940 1.48943 1.51590 1.86119 2.26892 2.80015 2.87864 3.01198 3.17771 3.28298 3.50230 3.70453 3.79277 3.99260 4.07670 4.12636 4.17530 4.27163 4.29930 4.33976 4.44225 4.50269 4.57087 4.61612 4.78711 4.83889 4.87611 4.90031 4.91484 5.10216 5.15766 5.22215 5.35868 5.52702 5.62201 5.77180 5.84766 5.85343 6.13786 6.16032 6.56366 6.82314 7.45758 7.54759 8.58637 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.002032 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.521201 B =13775.444454 C =14111.628748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.085 3.915 3 H 0.123 0.877 4 O -0.402 6.402 5 C 0.044 3.956 6 C -0.146 4.146 7 C -0.132 4.132 8 H 0.154 0.846 9 C 0.538 3.462 10 O -0.559 6.559 11 N -0.573 5.573 12 N -0.297 5.297 13 C 0.151 3.849 14 C -0.140 4.140 15 C -0.034 4.034 16 C -0.203 4.203 17 C 0.141 3.859 18 O -0.239 6.239 19 C -0.399 4.399 20 H 0.093 0.907 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.964 3.036 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.266 1.266 27 C -0.239 4.239 28 C -0.023 4.023 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.403 0.597 37 H 0.160 0.840 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.286 0.714 41 H 0.124 0.876 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.447 17.462 -11.210 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.140 0.860 4 O -0.321 6.321 5 C -0.033 4.033 6 C -0.184 4.184 7 C -0.155 4.155 8 H 0.171 0.829 9 C 0.326 3.674 10 O -0.434 6.434 11 N -0.316 5.316 12 N -0.102 5.102 13 C -0.057 4.057 14 C -0.144 4.144 15 C -0.054 4.054 16 C -0.222 4.222 17 C 0.090 3.910 18 O -0.145 6.145 19 C -0.475 4.475 20 H 0.110 0.890 21 C -0.185 4.185 22 N -0.555 5.555 23 Si 0.787 3.213 24 H -0.191 1.191 25 H -0.192 1.192 26 H -0.190 1.190 27 C -0.258 4.258 28 C -0.043 4.043 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.244 0.756 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.142 0.858 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 23.647 15.673 -12.204 30.883 hybrid contribution -0.883 0.039 0.867 1.239 sum 22.763 15.712 -11.337 29.893 Atomic orbital electron populations 1.22018 0.93783 1.01462 1.04265 1.23150 0.95068 0.96469 0.82558 0.85978 1.89176 1.28908 1.75220 1.38841 1.23587 0.83802 1.01157 0.94708 1.23027 0.97135 1.01444 0.96782 1.22952 0.93921 0.97124 1.01457 0.82857 1.20955 0.80777 0.89173 0.76476 1.90702 1.73704 1.22309 1.56692 1.46871 1.27819 1.11288 1.45657 1.74991 1.01580 1.20000 1.13594 1.24439 0.90537 0.98773 0.91964 1.18235 0.98854 0.93043 1.04239 1.21079 0.95653 0.92425 0.96274 1.20363 0.97991 1.01405 1.02445 1.19812 0.89299 0.89596 0.92296 1.83503 1.34103 1.35490 1.61445 1.20785 1.00165 0.98681 1.27872 0.89009 1.25219 0.93593 1.03908 0.95797 1.69705 1.11494 1.38598 1.35705 0.85305 0.78011 0.78357 0.79650 1.19124 1.19238 1.18995 1.21268 1.04138 0.93482 1.06935 1.21197 0.90527 0.99780 0.92770 0.95264 0.90568 0.88808 0.89296 0.88908 0.91783 0.86404 0.75553 0.82354 0.85103 0.85825 0.90474 0.85841 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.42 71.98 0.61 -1.71 16 2 C 0.09 1.05 3.83 31.10 0.12 1.17 16 3 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 4 O -0.40 -7.81 11.34 -148.98 -1.69 -9.50 16 5 C 0.04 0.56 7.63 72.48 0.55 1.11 16 6 C -0.15 -1.88 6.62 31.61 0.21 -1.67 16 7 C -0.13 -1.60 3.43 -10.53 -0.04 -1.64 16 8 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 9 C 0.54 12.16 5.24 87.65 0.46 12.62 16 10 O -0.56 -19.30 15.86 -3.12 -0.05 -19.35 16 11 N -0.57 -10.92 5.39 -173.50 -0.93 -11.86 16 12 N -0.30 -7.84 10.15 -52.22 -0.53 -8.37 16 13 C 0.15 3.32 10.74 87.39 0.94 4.26 16 14 C -0.14 -4.10 5.87 -20.12 -0.12 -4.22 16 15 C -0.03 -1.17 9.57 22.53 0.22 -0.96 16 16 C -0.20 -8.04 9.97 22.35 0.22 -7.82 16 17 C 0.14 6.40 6.65 22.67 0.15 6.55 16 18 O -0.24 -12.68 8.58 -21.41 -0.18 -12.87 16 19 C -0.40 -22.59 9.94 67.92 0.68 -21.92 16 20 H 0.09 5.31 5.42 -2.91 -0.02 5.29 16 21 C 0.01 0.81 5.49 84.83 0.47 1.27 16 22 N -0.92 -52.97 13.96 21.61 0.30 -52.67 16 23 Si 0.96 44.79 28.62 68.60 1.96 46.75 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 C -0.24 -9.52 9.15 22.35 0.20 -9.32 16 28 C -0.02 -0.67 9.78 22.53 0.22 -0.45 16 29 H 0.03 0.68 7.10 -2.39 -0.02 0.66 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.85 7.16 -2.39 -0.02 0.84 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 1.30 6.72 -2.39 -0.02 1.29 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.40 3.76 8.17 -213.32 -1.74 2.01 16 37 H 0.16 1.87 8.02 -2.91 -0.02 1.84 16 38 H 0.13 4.43 7.55 -2.91 -0.02 4.41 16 39 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.12 5.28 5.62 -2.91 -0.02 5.27 16 42 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -79.18 356.61 3.08 -76.10 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.68 Total: 14.47 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 4.89 Total: -22.71 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.16 Total: -72.89 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.92 Total: -41.72 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.96 Total: 46.75 kcal Total: -79.18 3.08 -76.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.349 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds