Wall clock time and date at job start Tue Mar 31 2020 12:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.42403 * 2 1 4 4 O 1.44647 * 110.50478 * 122.36677 * 2 1 3 5 5 C 1.44424 * 105.36768 * 159.18217 * 4 2 1 6 6 C 1.54481 * 104.80348 * 319.56339 * 5 4 2 7 7 C 1.54480 * 110.36586 * 237.68945 * 2 1 3 8 8 H 1.08997 * 110.51646 * 335.97433 * 7 2 1 9 9 C 1.50705 * 110.50964 * 98.55104 * 7 2 1 10 10 O 1.21311 * 119.99723 * 358.09219 * 9 7 2 11 11 N 1.34774 * 119.99894 * 178.09582 * 9 7 2 12 12 N 1.40104 * 119.99780 * 179.97438 * 11 9 7 13 13 C 1.29827 * 119.99832 * 179.97438 * 12 11 9 14 14 C 1.47365 * 119.99755 * 179.97438 * 13 12 11 15 15 C 1.39813 * 120.08613 * 359.72413 * 14 13 12 16 16 C 1.37712 * 119.90601 * 179.74533 * 15 14 13 17 17 C 1.39079 * 120.09264 * 0.55463 * 16 15 14 18 18 O 1.35654 * 119.91533 * 179.72139 * 17 16 15 19 19 C 1.34808 * 116.99973 * 174.42540 * 18 17 16 20 20 H 1.07999 * 120.00121 * 5.05254 * 19 18 17 21 21 C 1.38639 * 119.99814 * 185.05905 * 19 18 17 22 22 N 1.31566 * 119.99810 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00189 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47205 * 90.00023 * 23 21 19 25 25 H 1.48495 * 109.47440 * 210.00236 * 23 21 19 26 26 H 1.48499 * 109.47191 * 330.00379 * 23 21 19 27 27 C 1.39086 * 120.17043 * 359.69124 * 17 16 15 28 28 C 1.37710 * 120.09000 * 0.03181 * 27 17 16 29 29 H 1.08993 * 109.47385 * 182.31125 * 1 2 3 30 30 H 1.09000 * 109.46518 * 302.30944 * 1 2 3 31 31 H 1.08999 * 109.47206 * 62.30485 * 1 2 3 32 32 H 1.08995 * 110.37161 * 200.73102 * 5 4 2 33 33 H 1.09004 * 110.37477 * 78.39299 * 5 4 2 34 34 H 1.09000 * 110.50968 * 265.33179 * 6 5 4 35 35 H 1.08994 * 110.51583 * 142.62515 * 6 5 4 36 36 H 0.96992 * 120.00281 * 359.97438 * 11 9 7 37 37 H 1.07994 * 120.00281 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.04554 * 0.02562 * 15 14 13 39 39 H 1.08005 * 119.95093 * 180.24793 * 16 15 14 40 40 H 0.97004 * 119.99585 * 179.97438 * 22 21 19 41 41 H 1.08001 * 119.95218 * 180.02562 * 27 17 16 42 42 H 1.07995 * 120.04614 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0367 -0.7253 1.1443 5 6 3.3900 -1.0911 0.7971 6 6 3.3172 -1.5085 -0.6885 7 6 2.0676 -0.7741 -1.2240 8 1 1.3265 -1.4902 -1.5788 9 6 2.4482 0.1801 -2.3267 10 8 2.2779 1.3725 -2.1826 11 7 2.9775 -0.2914 -3.4729 12 7 3.3308 0.5956 -4.4983 13 6 3.8412 0.1415 -5.6023 14 6 4.2122 1.0744 -6.6810 15 6 4.0100 2.4484 -6.5197 16 6 4.3629 3.3174 -7.5280 17 6 4.9091 2.8289 -8.7101 18 8 5.2502 3.6877 -9.7033 19 6 5.8798 3.1652 -10.7747 20 1 6.0181 2.0969 -10.8520 21 6 6.3500 3.9994 -11.7773 22 7 6.9649 3.4895 -12.8227 23 14 6.1105 5.8471 -11.6440 24 1 7.2729 6.4476 -10.9415 25 1 5.9985 6.4313 -13.0046 26 1 4.8695 6.1315 -10.8796 27 6 5.1070 1.4623 -8.8764 28 6 4.7620 0.5873 -7.8706 29 1 -0.3634 -1.0267 0.0414 30 1 -0.3632 0.5493 0.8686 31 1 -0.3633 0.4776 -0.9099 32 1 3.7262 -1.9273 1.4101 33 1 4.0571 -0.2377 0.9191 34 1 3.1927 -2.5878 -0.7763 35 1 4.2100 -1.1815 -1.2214 36 1 3.1139 -1.2448 -3.5880 37 1 3.9938 -0.9200 -5.7301 38 1 3.5818 2.8281 -5.6038 39 1 4.2107 4.3793 -7.4026 40 1 7.2936 4.0732 -13.5244 41 1 5.5318 1.0869 -9.7957 42 1 4.9164 -0.4737 -8.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842557827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:44 Heat of formation + Delta-G solvation = -42.310689 kcal Electronic energy + Delta-G solvation = -24841.909423 eV Core-core repulsion = 20981.895969 eV Total energy + Delta-G solvation = -3860.013455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75253 -39.33399 -38.72070 -37.25927 -35.95654 -33.28706 -32.61346 -32.16821 -31.64486 -30.46412 -28.83927 -26.82383 -25.59423 -23.38968 -22.67392 -22.28306 -21.88043 -20.49631 -20.13774 -18.26767 -17.88250 -17.37318 -16.87366 -16.42656 -15.90031 -15.82906 -15.10219 -14.98164 -14.81467 -14.18000 -14.03327 -13.95361 -13.85006 -13.77961 -13.00778 -12.82309 -12.77950 -12.64067 -12.41678 -12.34453 -12.17657 -11.75177 -11.55612 -11.41388 -11.39462 -11.24271 -10.91450 -10.85356 -10.34743 -10.28586 -10.12772 -9.90648 -9.53020 -9.31520 -8.85931 -8.41906 -7.29171 -6.57371 -4.22132 1.21034 2.07280 2.30449 2.34849 2.93309 3.15494 3.19343 3.32990 3.40064 4.00376 4.12265 4.15625 4.23191 4.43977 4.51030 4.68518 4.74238 4.77030 4.78134 4.97059 4.98886 5.04071 5.11299 5.20548 5.29003 5.39608 5.45532 5.46383 5.62955 5.69171 5.80900 5.82241 6.00753 6.19691 6.39604 6.43271 6.66775 6.88938 6.97528 7.04164 7.11213 7.44120 7.48906 7.64592 7.87157 8.32264 8.76581 9.36974 10.48970 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035991 B = 0.001934 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.775219 B =14471.427103 C =14863.348803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.092 0.908 4 O -0.370 6.370 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.138 4.138 8 H 0.114 0.886 9 C 0.538 3.462 10 O -0.504 6.504 11 N -0.585 5.585 12 N -0.267 5.267 13 C 0.151 3.849 14 C -0.166 4.166 15 C -0.026 4.026 16 C -0.201 4.201 17 C 0.177 3.823 18 O -0.205 6.205 19 C -0.391 4.391 20 H 0.110 0.890 21 C 0.065 3.935 22 N -0.870 5.870 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.230 4.230 28 C -0.035 4.035 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.379 0.621 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.282 0.718 41 H 0.138 0.862 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -12.505 20.946 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.110 0.890 4 O -0.289 6.289 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.161 4.161 8 H 0.132 0.868 9 C 0.324 3.676 10 O -0.376 6.376 11 N -0.326 5.326 12 N -0.072 5.072 13 C -0.057 4.057 14 C -0.170 4.170 15 C -0.047 4.047 16 C -0.220 4.220 17 C 0.122 3.878 18 O -0.107 6.107 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.506 5.506 23 Si 0.731 3.269 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.182 1.182 27 C -0.249 4.249 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.216 0.784 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.099 -10.675 21.628 25.442 hybrid contribution 0.531 -0.834 -0.908 1.342 sum -7.568 -11.508 20.720 24.880 Atomic orbital electron populations 1.21796 0.92478 1.02789 1.03177 1.22976 0.95774 0.96191 0.82234 0.89036 1.89179 1.26958 1.74733 1.38048 1.23383 0.85101 1.00340 0.94221 1.23003 0.97045 1.01425 0.97227 1.22796 0.99852 0.98103 0.95357 0.86836 1.20113 0.76857 0.89428 0.81228 1.90729 1.51312 1.16237 1.79287 1.46938 1.63144 1.07704 1.14853 1.75141 1.15142 1.18944 0.97985 1.24458 0.92776 0.97553 0.90927 1.17843 1.12773 0.92324 0.94093 1.20912 0.94599 0.91765 0.97392 1.20203 1.08981 1.00019 0.92836 1.19347 0.91699 0.89223 0.87578 1.83548 1.65698 1.35671 1.25814 1.20839 1.34703 0.95577 0.95494 0.87226 1.24522 0.94761 1.00568 0.94104 1.69644 1.35291 1.37010 1.08642 0.86164 0.80166 0.82761 0.77798 1.19664 1.20588 1.18173 1.21164 1.09420 0.92783 1.01523 1.20831 0.94609 0.98628 0.91519 0.91815 0.91348 0.90735 0.88552 0.91846 0.89346 0.89919 0.78363 0.87430 0.85517 0.86057 0.90750 0.84416 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.52 37.16 0.35 -0.80 16 2 C 0.09 0.81 3.27 -25.95 -0.08 0.73 16 3 H 0.09 1.04 6.93 -51.93 -0.36 0.68 16 4 O -0.37 -3.58 11.35 -35.23 -0.40 -3.98 16 5 C 0.05 0.33 7.64 37.93 0.29 0.62 16 6 C -0.15 -0.91 6.70 -25.16 -0.17 -1.08 16 7 C -0.14 -1.11 3.05 -90.20 -0.27 -1.39 16 8 H 0.11 0.69 7.87 -51.93 -0.41 0.28 16 9 C 0.54 6.44 7.07 -10.98 -0.08 6.36 16 10 O -0.50 -8.27 15.80 5.53 0.09 -8.19 16 11 N -0.59 -6.57 6.22 31.22 0.19 -6.38 16 12 N -0.27 -3.89 10.15 32.14 0.33 -3.57 16 13 C 0.15 1.97 10.75 -14.69 -0.16 1.82 16 14 C -0.17 -2.65 5.87 -105.01 -0.62 -3.27 16 15 C -0.03 -0.46 9.57 -39.18 -0.37 -0.84 16 16 C -0.20 -3.88 9.97 -39.46 -0.39 -4.28 16 17 C 0.18 3.85 6.65 -38.96 -0.26 3.59 16 18 O -0.20 -5.13 8.58 0.41 0.00 -5.13 16 19 C -0.39 -10.42 9.94 30.88 0.31 -10.12 16 20 H 0.11 2.95 5.42 -52.49 -0.28 2.66 16 21 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.87 -23.96 13.96 55.48 0.77 -23.19 16 23 Si 0.91 20.80 28.62 -169.99 -4.86 15.93 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.23 -4.52 9.15 -39.46 -0.36 -4.88 16 28 C -0.04 -0.56 9.78 -39.19 -0.38 -0.95 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 36 H 0.38 2.79 8.65 -182.60 -1.58 1.21 16 37 H 0.11 1.01 8.02 -52.49 -0.42 0.59 16 38 H 0.13 2.15 7.55 -52.49 -0.40 1.75 16 39 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.14 2.81 5.62 -52.49 -0.29 2.52 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -31.79 361.48 -7.39 -39.18 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.66 Total: 2.69 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.30 Total: -12.83 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 1.30 Total: -33.13 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.31 Total: -17.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.86 Total: 15.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.79 -7.39 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.129 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds