Wall clock time and date at job start Tue Mar 31 2020 12:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.42403 * 2 1 4 4 O 1.44647 * 110.50478 * 122.36677 * 2 1 3 5 5 C 1.44424 * 105.36768 * 159.18217 * 4 2 1 6 6 C 1.54481 * 104.80348 * 319.56339 * 5 4 2 7 7 C 1.54480 * 110.36586 * 237.68945 * 2 1 3 8 8 H 1.08997 * 110.51646 * 335.97433 * 7 2 1 9 9 C 1.50705 * 110.50964 * 98.55104 * 7 2 1 10 10 O 1.21311 * 119.99723 * 358.09219 * 9 7 2 11 11 N 1.34774 * 119.99894 * 178.09582 * 9 7 2 12 12 N 1.40104 * 119.99780 * 179.97438 * 11 9 7 13 13 C 1.29827 * 119.99832 * 179.97438 * 12 11 9 14 14 C 1.47365 * 119.99755 * 179.97438 * 13 12 11 15 15 C 1.39813 * 120.08613 * 359.72413 * 14 13 12 16 16 C 1.37712 * 119.90601 * 179.74533 * 15 14 13 17 17 C 1.39079 * 120.09264 * 0.55463 * 16 15 14 18 18 O 1.35654 * 119.91533 * 179.72139 * 17 16 15 19 19 C 1.34808 * 116.99973 * 174.42540 * 18 17 16 20 20 H 1.07999 * 120.00121 * 5.05254 * 19 18 17 21 21 C 1.38639 * 119.99814 * 185.05905 * 19 18 17 22 22 N 1.31566 * 119.99810 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00189 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47205 * 90.00023 * 23 21 19 25 25 H 1.48495 * 109.47440 * 210.00236 * 23 21 19 26 26 H 1.48499 * 109.47191 * 330.00379 * 23 21 19 27 27 C 1.39086 * 120.17043 * 359.69124 * 17 16 15 28 28 C 1.37710 * 120.09000 * 0.03181 * 27 17 16 29 29 H 1.08993 * 109.47385 * 182.31125 * 1 2 3 30 30 H 1.09000 * 109.46518 * 302.30944 * 1 2 3 31 31 H 1.08999 * 109.47206 * 62.30485 * 1 2 3 32 32 H 1.08995 * 110.37161 * 200.73102 * 5 4 2 33 33 H 1.09004 * 110.37477 * 78.39299 * 5 4 2 34 34 H 1.09000 * 110.50968 * 265.33179 * 6 5 4 35 35 H 1.08994 * 110.51583 * 142.62515 * 6 5 4 36 36 H 0.96992 * 120.00281 * 359.97438 * 11 9 7 37 37 H 1.07994 * 120.00281 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.04554 * 0.02562 * 15 14 13 39 39 H 1.08005 * 119.95093 * 180.24793 * 16 15 14 40 40 H 0.97004 * 119.99585 * 179.97438 * 22 21 19 41 41 H 1.08001 * 119.95218 * 180.02562 * 27 17 16 42 42 H 1.07995 * 120.04614 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0367 -0.7253 1.1443 5 6 3.3900 -1.0911 0.7971 6 6 3.3172 -1.5085 -0.6885 7 6 2.0676 -0.7741 -1.2240 8 1 1.3265 -1.4902 -1.5788 9 6 2.4482 0.1801 -2.3267 10 8 2.2779 1.3725 -2.1826 11 7 2.9775 -0.2914 -3.4729 12 7 3.3308 0.5956 -4.4983 13 6 3.8412 0.1415 -5.6023 14 6 4.2122 1.0744 -6.6810 15 6 4.0100 2.4484 -6.5197 16 6 4.3629 3.3174 -7.5280 17 6 4.9091 2.8289 -8.7101 18 8 5.2502 3.6877 -9.7033 19 6 5.8798 3.1652 -10.7747 20 1 6.0181 2.0969 -10.8520 21 6 6.3500 3.9994 -11.7773 22 7 6.9649 3.4895 -12.8227 23 14 6.1105 5.8471 -11.6440 24 1 7.2729 6.4476 -10.9415 25 1 5.9985 6.4313 -13.0046 26 1 4.8695 6.1315 -10.8796 27 6 5.1070 1.4623 -8.8764 28 6 4.7620 0.5873 -7.8706 29 1 -0.3634 -1.0267 0.0414 30 1 -0.3632 0.5493 0.8686 31 1 -0.3633 0.4776 -0.9099 32 1 3.7262 -1.9273 1.4101 33 1 4.0571 -0.2377 0.9191 34 1 3.1927 -2.5878 -0.7763 35 1 4.2100 -1.1815 -1.2214 36 1 3.1139 -1.2448 -3.5880 37 1 3.9938 -0.9200 -5.7301 38 1 3.5818 2.8281 -5.6038 39 1 4.2107 4.3793 -7.4026 40 1 7.2936 4.0732 -13.5244 41 1 5.5318 1.0869 -9.7957 42 1 4.9164 -0.4737 -8.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842557827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:43 Heat of formation + Delta-G solvation = -63.925146 kcal Electronic energy + Delta-G solvation = -24842.846696 eV Core-core repulsion = 20981.895969 eV Total energy + Delta-G solvation = -3860.950728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55694 -40.92434 -39.59994 -38.69296 -37.19082 -34.54563 -34.10631 -33.06588 -32.38128 -31.94804 -30.19094 -27.67253 -27.24010 -24.54824 -23.76853 -23.30012 -22.86767 -21.62529 -21.16600 -19.90311 -19.22064 -18.68467 -17.99594 -17.11540 -16.79726 -16.59216 -16.48632 -16.29137 -15.88669 -15.76435 -15.55449 -15.32761 -14.92716 -14.55956 -14.38554 -14.13871 -14.05367 -13.97341 -13.52015 -13.31526 -13.02518 -12.88486 -12.80442 -12.51956 -12.49672 -12.31209 -12.14373 -11.99597 -11.82508 -11.38327 -11.18901 -11.04537 -10.97714 -10.74801 -10.28125 -9.87883 -8.78934 -8.51939 -6.23087 -0.05653 0.57645 1.18640 1.32697 1.36253 1.42824 1.51953 1.83294 2.26972 2.76667 2.80339 3.01831 3.16605 3.39393 3.49024 3.54537 3.76406 3.94534 4.01681 4.12649 4.13935 4.23433 4.29499 4.35533 4.49684 4.56253 4.60624 4.64520 4.78264 4.80676 4.89085 4.91401 4.97592 5.03005 5.19706 5.22131 5.35515 5.52324 5.61736 5.76554 5.77257 5.84714 6.09002 6.15312 6.49279 6.82234 7.40343 7.54572 8.58496 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035991 B = 0.001934 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.775219 B =14471.427103 C =14863.348803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.061 0.939 4 O -0.385 6.385 5 C 0.037 3.963 6 C -0.141 4.141 7 C -0.127 4.127 8 H 0.144 0.856 9 C 0.536 3.464 10 O -0.555 6.555 11 N -0.572 5.572 12 N -0.297 5.297 13 C 0.155 3.845 14 C -0.142 4.142 15 C -0.033 4.033 16 C -0.203 4.203 17 C 0.141 3.859 18 O -0.239 6.239 19 C -0.399 4.399 20 H 0.092 0.908 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.964 3.036 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.265 1.265 27 C -0.240 4.240 28 C -0.022 4.022 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.404 0.596 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 -15.565 23.538 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.079 0.921 4 O -0.304 6.304 5 C -0.040 4.040 6 C -0.178 4.178 7 C -0.150 4.150 8 H 0.162 0.838 9 C 0.324 3.676 10 O -0.431 6.431 11 N -0.315 5.315 12 N -0.102 5.102 13 C -0.054 4.054 14 C -0.145 4.145 15 C -0.053 4.053 16 C -0.222 4.222 17 C 0.090 3.910 18 O -0.145 6.145 19 C -0.475 4.475 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.787 3.213 24 H -0.192 1.192 25 H -0.192 1.192 26 H -0.189 1.189 27 C -0.259 4.259 28 C -0.042 4.042 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.245 0.755 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.141 0.859 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.080 -13.789 24.261 29.346 hybrid contribution 0.669 -0.149 -1.215 1.395 sum -8.411 -13.938 23.047 28.216 Atomic orbital electron populations 1.21781 0.91571 1.03792 1.02857 1.22920 0.96582 0.95083 0.83132 0.92064 1.89170 1.28229 1.74609 1.38393 1.23606 0.83850 1.00876 0.95623 1.23045 0.95810 1.03048 0.95945 1.22810 1.01525 0.97444 0.93188 0.83814 1.20894 0.75582 0.89344 0.81746 1.90720 1.53384 1.18737 1.80244 1.46755 1.62386 1.08624 1.13717 1.75007 1.14426 1.21804 0.99010 1.24456 0.92306 0.99141 0.89460 1.18228 1.09380 0.92208 0.94703 1.21089 0.94574 0.92675 0.96962 1.20372 1.08511 1.00827 0.92480 1.19828 0.93005 0.90176 0.87974 1.83506 1.68173 1.36358 1.26445 1.20783 1.35244 0.95018 0.96476 0.89023 1.25227 0.94925 1.04423 0.93975 1.69714 1.37754 1.38265 1.09757 0.85300 0.79623 0.78261 0.78099 1.19196 1.19206 1.18926 1.21267 1.09757 0.92624 1.02247 1.21196 0.92687 1.00392 0.89966 0.90066 0.91582 0.91231 0.86204 0.92885 0.86039 0.89948 0.75498 0.82380 0.84907 0.85717 0.90477 0.85889 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.52 71.98 0.69 -1.37 16 2 C 0.08 1.41 3.27 31.10 0.10 1.51 16 3 H 0.06 1.43 6.93 -2.39 -0.02 1.41 16 4 O -0.38 -6.69 11.35 -148.98 -1.69 -8.38 16 5 C 0.04 0.42 7.64 72.49 0.55 0.98 16 6 C -0.14 -1.14 6.70 31.61 0.21 -0.93 16 7 C -0.13 -1.63 3.05 -10.52 -0.03 -1.66 16 8 H 0.14 1.03 7.87 -2.39 -0.02 1.01 16 9 C 0.54 11.47 7.07 87.66 0.62 12.09 16 10 O -0.56 -17.87 15.80 -3.12 -0.05 -17.91 16 11 N -0.57 -10.50 6.22 -173.51 -1.08 -11.58 16 12 N -0.30 -7.57 10.15 -52.22 -0.53 -8.10 16 13 C 0.15 3.28 10.75 87.39 0.94 4.22 16 14 C -0.14 -4.03 5.87 -20.11 -0.12 -4.15 16 15 C -0.03 -1.10 9.57 22.53 0.22 -0.88 16 16 C -0.20 -7.86 9.97 22.35 0.22 -7.63 16 17 C 0.14 6.32 6.65 22.68 0.15 6.47 16 18 O -0.24 -12.52 8.58 -21.45 -0.18 -12.71 16 19 C -0.40 -22.43 9.94 67.92 0.68 -21.76 16 20 H 0.09 5.27 5.42 -2.91 -0.02 5.25 16 21 C 0.01 0.79 5.49 84.83 0.47 1.25 16 22 N -0.92 -52.68 13.96 21.61 0.30 -52.38 16 23 Si 0.96 44.43 28.62 68.60 1.96 46.39 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 27 C -0.24 -9.43 9.15 22.35 0.20 -9.22 16 28 C -0.02 -0.64 9.78 22.53 0.22 -0.42 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.08 0.71 7.72 -2.39 -0.02 0.69 16 36 H 0.40 3.70 8.65 -213.33 -1.85 1.85 16 37 H 0.16 1.79 8.02 -2.91 -0.02 1.77 16 38 H 0.13 4.31 7.55 -2.91 -0.02 4.29 16 39 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.29 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.12 5.21 5.62 -2.91 -0.02 5.20 16 42 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -74.75 361.48 3.06 -71.70 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.79 Total: 14.49 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.12 Total: -21.50 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.31 Total: -72.06 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.92 Total: -39.01 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.96 Total: 46.39 kcal Total: -74.75 3.06 -71.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds