Wall clock time and date at job start Tue Mar 31 2020 12:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.27523 * 2 1 4 4 O 1.43647 * 110.30773 * 237.91202 * 2 1 3 5 5 C 1.43241 * 109.97106 * 216.65991 * 4 2 1 6 6 C 1.54387 * 107.58726 * 1.71177 * 5 4 2 7 7 C 1.54950 * 110.30766 * 122.09523 * 2 1 3 8 8 H 1.08997 * 111.12662 * 37.44393 * 7 2 1 9 9 C 1.50703 * 111.12295 * 273.27686 * 7 2 1 10 10 O 1.21311 * 119.99988 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99681 * 180.02562 * 9 7 2 12 12 N 1.40108 * 120.00036 * 179.97438 * 11 9 7 13 13 C 1.29818 * 120.00093 * 179.97438 * 12 11 9 14 14 C 1.47361 * 120.00386 * 180.02562 * 13 12 11 15 15 C 1.39817 * 120.08054 * 359.72891 * 14 13 12 16 16 C 1.37708 * 119.91013 * 179.76792 * 15 14 13 17 17 C 1.39083 * 120.08946 * 0.50619 * 16 15 14 18 18 O 1.35652 * 119.91428 * 179.72407 * 17 16 15 19 19 C 1.34807 * 116.99778 * 174.46928 * 18 17 16 20 20 H 1.07999 * 120.00397 * 5.05753 * 19 18 17 21 21 C 1.38642 * 119.99965 * 185.05618 * 19 18 17 22 22 N 1.31561 * 120.00061 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46933 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47013 * 120.00056 * 23 21 19 26 26 H 1.48502 * 109.47153 * 239.99720 * 23 21 19 27 27 C 1.39080 * 120.17049 * 359.74376 * 17 16 15 28 28 C 1.37714 * 120.09012 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.46786 * 179.29749 * 1 2 3 30 30 H 1.08995 * 109.46709 * 299.29617 * 1 2 3 31 31 H 1.09003 * 109.46984 * 59.29557 * 1 2 3 32 32 H 1.08994 * 109.83338 * 121.22282 * 5 4 2 33 33 H 1.09001 * 109.83179 * 242.20054 * 5 4 2 34 34 H 1.08996 * 110.84895 * 139.55280 * 6 5 4 35 35 H 1.09004 * 110.84380 * 262.96367 * 6 5 4 36 36 H 0.97002 * 120.00273 * 0.02562 * 11 9 7 37 37 H 1.07999 * 120.00608 * 0.02562 * 13 12 11 38 38 H 1.08005 * 120.04499 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.95809 * 180.25252 * 16 15 14 40 40 H 0.97003 * 120.00439 * 180.02562 * 22 21 19 41 41 H 1.08007 * 119.95292 * 179.97438 * 27 17 16 42 42 H 1.07997 * 120.04322 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 8 2.0286 -0.7157 -1.1414 5 6 3.2112 -1.4413 -0.7856 6 6 3.4699 -1.2034 0.7178 7 6 2.0678 -0.7721 1.2311 8 1 1.4471 -1.6404 1.4521 9 6 2.1809 0.1314 2.4319 10 8 1.8656 1.2995 2.3439 11 7 2.6324 -0.3583 3.6035 12 7 2.7381 0.4817 4.7198 13 6 3.1725 0.0099 5.8485 14 6 3.2832 0.8932 7.0227 15 6 2.9262 2.2413 6.9217 16 6 3.0264 3.0625 8.0226 17 6 3.4921 2.5552 9.2309 18 8 3.5948 3.3686 10.3116 19 6 3.9425 2.7931 11.4800 20 1 4.2046 1.7458 11.5092 21 6 3.9635 3.5456 12.6442 22 7 3.6437 4.8213 12.6088 23 14 4.4446 2.7480 14.2634 24 1 4.7563 1.3141 14.0355 25 1 5.6411 3.4324 14.8161 26 1 3.3196 2.8637 15.2258 27 6 3.8532 1.2160 9.3340 28 6 3.7503 0.3869 8.2393 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3632 0.5028 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 3.0624 -2.5049 -0.9713 33 1 4.0575 -1.0778 -1.3684 34 1 3.7966 -2.1218 1.2053 35 1 4.2001 -0.4075 0.8645 36 1 2.8849 -1.2923 3.6737 37 1 3.4529 -1.0302 5.9270 38 1 2.5682 2.6370 5.9827 39 1 2.7470 4.1030 7.9465 40 1 3.6588 5.3480 13.4233 41 1 4.2148 0.8258 10.2740 42 1 4.0313 -0.6527 8.3201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842557829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:48 Heat of formation + Delta-G solvation = -44.806711 kcal Electronic energy + Delta-G solvation = -24770.476968 eV Core-core repulsion = 20910.355278 eV Total energy + Delta-G solvation = -3860.121690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68646 -39.17897 -38.75027 -37.12740 -35.86293 -33.23172 -32.56377 -32.07935 -31.65018 -30.36275 -28.66983 -26.79467 -25.63441 -23.58155 -22.58953 -22.09996 -21.68971 -20.54144 -20.14137 -18.28386 -18.04556 -17.33104 -16.74082 -16.55343 -15.76832 -15.28590 -15.12073 -14.92847 -14.63448 -14.33775 -14.32478 -13.87416 -13.79666 -13.57032 -13.00839 -12.86567 -12.74881 -12.60719 -12.49994 -12.30358 -11.83622 -11.82087 -11.44548 -11.36429 -11.31033 -11.21011 -10.98593 -10.81090 -10.52765 -10.21851 -9.99393 -9.82144 -9.46997 -9.28395 -8.79630 -8.32718 -7.16087 -6.61382 -4.17764 1.29772 2.17500 2.35262 2.38993 2.95409 3.05058 3.10887 3.11431 3.33352 3.84057 3.89903 4.20361 4.22153 4.52493 4.56572 4.68428 4.74317 4.82493 4.96280 5.00932 5.08014 5.14281 5.15539 5.23712 5.27209 5.45929 5.49967 5.52710 5.71462 5.78220 5.88907 5.90700 6.10844 6.30514 6.58462 6.60815 6.76765 6.92352 6.97838 7.14365 7.16447 7.29073 7.54385 7.66795 7.83635 8.37932 8.83320 9.50960 10.55469 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.001857 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.787202 B =15078.266329 C =15470.487573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.098 3.902 3 H 0.089 0.911 4 O -0.378 6.378 5 C 0.054 3.946 6 C -0.147 4.147 7 C -0.140 4.140 8 H 0.115 0.885 9 C 0.541 3.459 10 O -0.502 6.502 11 N -0.585 5.585 12 N -0.269 5.269 13 C 0.153 3.847 14 C -0.176 4.176 15 C -0.024 4.024 16 C -0.201 4.201 17 C 0.170 3.830 18 O -0.165 6.165 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.040 3.960 22 N -0.853 5.853 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.033 4.033 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.378 0.622 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.132 0.868 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -15.838 -18.944 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.107 0.893 4 O -0.298 6.298 5 C -0.023 4.023 6 C -0.185 4.185 7 C -0.163 4.163 8 H 0.133 0.867 9 C 0.327 3.673 10 O -0.374 6.374 11 N -0.326 5.326 12 N -0.075 5.075 13 C -0.055 4.055 14 C -0.180 4.180 15 C -0.045 4.045 16 C -0.221 4.221 17 C 0.113 3.887 18 O -0.065 6.065 19 C -0.469 4.469 20 H 0.115 0.885 21 C -0.166 4.166 22 N -0.486 5.486 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.261 4.261 28 C -0.054 4.054 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.215 0.785 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.150 0.850 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.261 -13.809 -19.636 24.038 hybrid contribution 0.873 -1.899 1.472 2.557 sum -0.388 -15.708 -18.164 24.017 Atomic orbital electron populations 1.21890 0.92950 1.02620 1.03284 1.22803 0.95441 0.95917 0.81840 0.89314 1.88447 1.42438 1.65138 1.33778 1.23078 0.88414 0.96892 0.93866 1.23168 0.95725 1.03228 0.96407 1.23100 0.99227 0.99738 0.94263 0.86732 1.19888 0.76957 0.88507 0.81949 1.90744 1.46280 1.16995 1.83366 1.46931 1.65746 1.10924 1.08982 1.75165 1.18239 1.19455 0.94618 1.24452 0.92921 0.97151 0.90927 1.17778 1.15058 0.93574 0.91565 1.20907 0.94281 0.92010 0.97261 1.20207 1.09614 1.00771 0.91466 1.19598 0.91056 0.89507 0.88538 1.83947 1.73392 1.34237 1.14973 1.21482 1.46654 0.96375 0.82346 0.88540 1.25384 0.96461 0.95593 0.99127 1.70049 1.42998 1.06202 1.29360 0.85590 0.78511 0.79069 0.79938 1.18925 1.19990 1.19973 1.21044 1.11003 0.94150 0.99951 1.20772 0.95153 0.98219 0.91265 0.92073 0.90587 0.91398 0.90880 0.90928 0.89128 0.89700 0.78508 0.87632 0.85684 0.86066 0.91715 0.85036 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.62 37.16 0.36 -0.96 16 2 C 0.10 0.95 3.22 -25.70 -0.08 0.87 16 3 H 0.09 1.02 7.37 -51.93 -0.38 0.64 16 4 O -0.38 -3.70 11.04 -35.23 -0.39 -4.09 16 5 C 0.05 0.36 7.80 37.88 0.30 0.66 16 6 C -0.15 -0.92 6.49 -24.72 -0.16 -1.08 16 7 C -0.14 -1.16 2.91 -89.46 -0.26 -1.42 16 8 H 0.11 0.71 8.06 -51.93 -0.42 0.29 16 9 C 0.54 6.64 7.28 -10.99 -0.08 6.56 16 10 O -0.50 -8.42 16.05 5.53 0.09 -8.33 16 11 N -0.58 -6.78 6.26 31.22 0.20 -6.58 16 12 N -0.27 -4.08 10.15 32.14 0.33 -3.75 16 13 C 0.15 2.09 10.74 -14.69 -0.16 1.93 16 14 C -0.18 -2.92 5.87 -105.01 -0.62 -3.54 16 15 C -0.02 -0.45 9.57 -39.19 -0.37 -0.83 16 16 C -0.20 -4.18 9.97 -39.46 -0.39 -4.58 16 17 C 0.17 3.90 6.65 -38.96 -0.26 3.64 16 18 O -0.16 -4.49 9.75 0.42 0.00 -4.49 16 19 C -0.39 -10.39 9.48 30.88 0.29 -10.10 16 20 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 22 N -0.85 -24.03 13.67 55.48 0.76 -23.27 16 23 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.24 -4.83 9.15 -39.46 -0.36 -5.19 16 28 C -0.03 -0.55 9.78 -39.19 -0.38 -0.93 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.61 8.03 -51.93 -0.42 0.20 16 36 H 0.38 2.87 8.65 -182.59 -1.58 1.29 16 37 H 0.11 1.03 8.02 -52.49 -0.42 0.61 16 38 H 0.13 2.26 7.55 -52.48 -0.40 1.86 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.58 5.62 -52.48 -0.29 2.29 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.86 363.59 -7.54 -40.40 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.70 Total: 4.21 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.28 Total: -14.00 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.28 Total: -33.61 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.30 Total: -16.91 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.86 -7.54 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.408 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds