Wall clock time and date at job start Tue Mar 31 2020 12:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.27523 * 2 1 4 4 O 1.43647 * 110.30773 * 237.91202 * 2 1 3 5 5 C 1.43241 * 109.97106 * 216.65991 * 4 2 1 6 6 C 1.54387 * 107.58726 * 1.71177 * 5 4 2 7 7 C 1.54950 * 110.30766 * 122.09523 * 2 1 3 8 8 H 1.08997 * 111.12662 * 37.44393 * 7 2 1 9 9 C 1.50703 * 111.12295 * 273.27686 * 7 2 1 10 10 O 1.21311 * 119.99988 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99681 * 180.02562 * 9 7 2 12 12 N 1.40108 * 120.00036 * 179.97438 * 11 9 7 13 13 C 1.29818 * 120.00093 * 179.97438 * 12 11 9 14 14 C 1.47361 * 120.00386 * 180.02562 * 13 12 11 15 15 C 1.39817 * 120.08054 * 359.72891 * 14 13 12 16 16 C 1.37708 * 119.91013 * 179.76792 * 15 14 13 17 17 C 1.39083 * 120.08946 * 0.50619 * 16 15 14 18 18 O 1.35652 * 119.91428 * 179.72407 * 17 16 15 19 19 C 1.34807 * 116.99778 * 174.46928 * 18 17 16 20 20 H 1.07999 * 120.00397 * 5.05753 * 19 18 17 21 21 C 1.38642 * 119.99965 * 185.05618 * 19 18 17 22 22 N 1.31561 * 120.00061 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46933 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47013 * 120.00056 * 23 21 19 26 26 H 1.48502 * 109.47153 * 239.99720 * 23 21 19 27 27 C 1.39080 * 120.17049 * 359.74376 * 17 16 15 28 28 C 1.37714 * 120.09012 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.46786 * 179.29749 * 1 2 3 30 30 H 1.08995 * 109.46709 * 299.29617 * 1 2 3 31 31 H 1.09003 * 109.46984 * 59.29557 * 1 2 3 32 32 H 1.08994 * 109.83338 * 121.22282 * 5 4 2 33 33 H 1.09001 * 109.83179 * 242.20054 * 5 4 2 34 34 H 1.08996 * 110.84895 * 139.55280 * 6 5 4 35 35 H 1.09004 * 110.84380 * 262.96367 * 6 5 4 36 36 H 0.97002 * 120.00273 * 0.02562 * 11 9 7 37 37 H 1.07999 * 120.00608 * 0.02562 * 13 12 11 38 38 H 1.08005 * 120.04499 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.95809 * 180.25252 * 16 15 14 40 40 H 0.97003 * 120.00439 * 180.02562 * 22 21 19 41 41 H 1.08007 * 119.95292 * 179.97438 * 27 17 16 42 42 H 1.07997 * 120.04322 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 8 2.0286 -0.7157 -1.1414 5 6 3.2112 -1.4413 -0.7856 6 6 3.4699 -1.2034 0.7178 7 6 2.0678 -0.7721 1.2311 8 1 1.4471 -1.6404 1.4521 9 6 2.1809 0.1314 2.4319 10 8 1.8656 1.2995 2.3439 11 7 2.6324 -0.3583 3.6035 12 7 2.7381 0.4817 4.7198 13 6 3.1725 0.0099 5.8485 14 6 3.2832 0.8932 7.0227 15 6 2.9262 2.2413 6.9217 16 6 3.0264 3.0625 8.0226 17 6 3.4921 2.5552 9.2309 18 8 3.5948 3.3686 10.3116 19 6 3.9425 2.7931 11.4800 20 1 4.2046 1.7458 11.5092 21 6 3.9635 3.5456 12.6442 22 7 3.6437 4.8213 12.6088 23 14 4.4446 2.7480 14.2634 24 1 4.7563 1.3141 14.0355 25 1 5.6411 3.4324 14.8161 26 1 3.3196 2.8637 15.2258 27 6 3.8532 1.2160 9.3340 28 6 3.7503 0.3869 8.2393 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3632 0.5028 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 3.0624 -2.5049 -0.9713 33 1 4.0575 -1.0778 -1.3684 34 1 3.7966 -2.1218 1.2053 35 1 4.2001 -0.4075 0.8645 36 1 2.8849 -1.2923 3.6737 37 1 3.4529 -1.0302 5.9270 38 1 2.5682 2.6370 5.9827 39 1 2.7470 4.1030 7.9465 40 1 3.6588 5.3480 13.4233 41 1 4.2148 0.8258 10.2740 42 1 4.0313 -0.6527 8.3201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842557829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:47 Heat of formation + Delta-G solvation = -67.905979 kcal Electronic energy + Delta-G solvation = -24771.478628 eV Core-core repulsion = 20910.355278 eV Total energy + Delta-G solvation = -3861.123350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50652 -40.80266 -39.66005 -38.60579 -37.15554 -34.44110 -34.01563 -33.03546 -32.42945 -31.90816 -30.06692 -27.65776 -27.33207 -24.70750 -23.77439 -23.30102 -22.52197 -21.66914 -21.25605 -19.91867 -19.13053 -18.70480 -17.99894 -17.32783 -16.68306 -16.45273 -16.28434 -16.08876 -15.91022 -15.75624 -15.58157 -15.11662 -14.97180 -14.71617 -14.47901 -14.06776 -13.97490 -13.55358 -13.54669 -13.31924 -13.05777 -12.89785 -12.75872 -12.49252 -12.41550 -12.41245 -12.06544 -12.05579 -11.85550 -11.32133 -11.14211 -10.98059 -10.90237 -10.52463 -10.22104 -9.84733 -8.72249 -8.48934 -6.16254 -0.00475 0.61596 1.20989 1.38235 1.44112 1.46760 1.56978 1.85927 2.17694 2.68448 2.87825 3.20040 3.27136 3.45161 3.49761 3.56572 3.78587 3.95293 4.03958 4.13203 4.16850 4.18064 4.31761 4.34644 4.52346 4.57017 4.64535 4.67076 4.80680 4.81237 4.86506 4.99332 5.00187 5.09564 5.15916 5.20382 5.26831 5.55347 5.64972 5.65781 5.98051 6.00564 6.10611 6.12558 6.51893 6.95292 7.43100 7.73679 8.73868 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.001857 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.787202 B =15078.266329 C =15470.487573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.093 3.907 3 H 0.059 0.941 4 O -0.396 6.396 5 C 0.046 3.954 6 C -0.139 4.139 7 C -0.128 4.128 8 H 0.147 0.853 9 C 0.540 3.460 10 O -0.555 6.555 11 N -0.570 5.570 12 N -0.303 5.303 13 C 0.158 3.842 14 C -0.152 4.152 15 C -0.031 4.031 16 C -0.216 4.216 17 C 0.134 3.866 18 O -0.225 6.225 19 C -0.413 4.413 20 H 0.113 0.887 21 C -0.025 4.025 22 N -0.919 5.919 23 Si 1.022 2.978 24 H -0.244 1.244 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.246 4.246 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.162 0.838 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.273 0.727 41 H 0.134 0.866 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -21.384 -20.578 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.077 0.923 4 O -0.316 6.316 5 C -0.030 4.030 6 C -0.177 4.177 7 C -0.151 4.151 8 H 0.165 0.835 9 C 0.328 3.672 10 O -0.431 6.431 11 N -0.313 5.313 12 N -0.108 5.108 13 C -0.050 4.050 14 C -0.155 4.155 15 C -0.051 4.051 16 C -0.235 4.235 17 C 0.082 3.918 18 O -0.130 6.130 19 C -0.489 4.489 20 H 0.130 0.870 21 C -0.222 4.222 22 N -0.556 5.556 23 Si 0.841 3.159 24 H -0.167 1.167 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.265 4.265 28 C -0.037 4.037 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.245 0.755 37 H 0.179 0.821 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.461 -19.434 -21.333 28.862 hybrid contribution 0.562 -0.378 1.405 1.560 sum 0.101 -19.812 -19.928 28.101 Atomic orbital electron populations 1.21852 0.92524 1.03541 1.02561 1.22704 0.95880 0.94943 0.82938 0.92312 1.88434 1.43699 1.65436 1.34026 1.23330 0.87554 0.97912 0.94193 1.23208 0.93899 1.04380 0.96226 1.23087 1.01185 0.99349 0.91439 0.83514 1.20679 0.75460 0.88302 0.82806 1.90735 1.48516 1.19581 1.84226 1.46722 1.65145 1.11841 1.07641 1.75033 1.17431 1.22314 0.96029 1.24458 0.92658 0.98821 0.89085 1.18206 1.11252 0.92878 0.93179 1.21032 0.94475 0.93205 0.96372 1.20316 1.10281 1.00905 0.92030 1.20088 0.92486 0.91085 0.88187 1.83929 1.76873 1.36072 1.16137 1.22004 1.46875 0.97248 0.82739 0.86992 1.26696 0.96382 0.96106 1.03064 1.70205 1.46763 1.08290 1.30392 0.84476 0.78037 0.78930 0.74446 1.16669 1.19622 1.19650 1.21245 1.10597 0.93153 1.01489 1.21226 0.92968 1.00188 0.89359 0.90241 0.91880 0.91620 0.88435 0.90553 0.85442 0.91062 0.75482 0.82126 0.85498 0.87320 0.91765 0.84849 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.62 71.98 0.69 -1.74 16 2 C 0.09 1.70 3.22 31.26 0.10 1.81 16 3 H 0.06 1.40 7.37 -2.39 -0.02 1.39 16 4 O -0.40 -6.97 11.04 -148.98 -1.65 -8.62 16 5 C 0.05 0.46 7.80 72.45 0.56 1.02 16 6 C -0.14 -1.18 6.49 31.90 0.21 -0.98 16 7 C -0.13 -1.69 2.91 -10.04 -0.03 -1.72 16 8 H 0.15 1.06 8.06 -2.39 -0.02 1.04 16 9 C 0.54 11.95 7.28 87.66 0.64 12.59 16 10 O -0.56 -18.48 16.05 -3.13 -0.05 -18.53 16 11 N -0.57 -10.84 6.26 -173.51 -1.09 -11.92 16 12 N -0.30 -8.08 10.15 -52.23 -0.53 -8.61 16 13 C 0.16 3.48 10.74 87.39 0.94 4.42 16 14 C -0.15 -4.52 5.87 -20.12 -0.12 -4.64 16 15 C -0.03 -1.12 9.57 22.53 0.22 -0.91 16 16 C -0.22 -9.42 9.97 22.35 0.22 -9.19 16 17 C 0.13 6.43 6.65 22.68 0.15 6.58 16 18 O -0.23 -13.16 9.75 -21.42 -0.21 -13.37 16 19 C -0.41 -22.91 9.48 67.92 0.64 -22.27 16 20 H 0.11 5.51 5.18 -2.91 -0.02 5.49 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -55.39 13.67 21.61 0.30 -55.09 16 23 Si 1.02 40.91 29.55 68.60 2.03 42.94 16 24 H -0.24 -8.72 7.11 99.48 0.71 -8.02 16 25 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 27 C -0.25 -9.56 9.15 22.35 0.20 -9.35 16 28 C -0.02 -0.50 9.78 22.52 0.22 -0.28 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 0.83 8.03 -2.38 -0.02 0.81 16 36 H 0.40 3.73 8.65 -213.31 -1.85 1.88 16 37 H 0.16 1.82 8.02 -2.91 -0.02 1.79 16 38 H 0.13 4.58 7.55 -2.91 -0.02 4.56 16 39 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.13 5.10 5.62 -2.91 -0.02 5.09 16 42 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -80.81 363.59 3.13 -77.68 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.79 Total: 21.06 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.12 Total: -25.54 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.32 Total: -75.63 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.90 Total: -40.51 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -80.81 3.13 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842557829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.772 kcal (2) G-P(sol) polarization free energy of solvation -80.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds