Wall clock time and date at job start Tue Mar 31 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.42231 * 2 1 4 4 O 1.44424 * 110.37087 * 237.68716 * 2 1 3 5 5 C 1.44421 * 105.27775 * 200.65603 * 4 2 1 6 6 C 1.54801 * 104.85494 * 40.46506 * 5 4 2 7 7 C 1.54483 * 110.37416 * 122.31446 * 2 1 3 8 8 H 1.09007 * 110.50839 * 261.59221 * 7 2 1 9 9 C 1.50704 * 110.50976 * 24.15884 * 7 2 1 10 10 O 1.21277 * 119.99547 * 84.20625 * 9 7 2 11 11 N 1.34770 * 120.00117 * 264.20085 * 9 7 2 12 12 N 1.40100 * 120.00202 * 180.02562 * 11 9 7 13 13 C 1.34777 * 120.00528 * 179.97438 * 12 11 9 14 14 O 1.21547 * 119.99705 * 0.27633 * 13 12 11 15 15 C 1.47886 * 120.00334 * 179.97438 * 13 12 11 16 16 C 1.39919 * 120.02469 * 0.02562 * 15 13 12 17 17 C 1.38321 * 120.35892 * 179.97438 * 16 15 13 18 18 C 1.37750 * 120.41654 * 0.02562 * 17 16 15 19 19 C 1.40758 * 120.03338 * 359.97438 * 18 17 16 20 20 C 1.41442 * 120.17423 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00170 * 24.69617 * 20 19 18 22 22 C 1.39937 * 119.99516 * 204.69625 * 20 19 18 23 23 N 1.30828 * 120.00245 * 16.22643 * 22 20 19 24 24 Si 1.86805 * 119.99760 * 196.22607 * 22 20 19 25 25 H 1.48506 * 109.46827 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47100 * 120.00034 * 24 22 20 27 27 H 1.48503 * 109.47096 * 240.00376 * 24 22 20 28 28 C 1.38987 * 120.02624 * 179.72301 * 15 13 12 29 29 H 1.09009 * 109.46792 * 291.88241 * 1 2 3 30 30 H 1.08997 * 109.47315 * 51.88071 * 1 2 3 31 31 H 1.09005 * 109.47148 * 171.88890 * 1 2 3 32 32 H 1.08998 * 110.37334 * 159.34607 * 5 4 2 33 33 H 1.08997 * 110.37234 * 281.57520 * 5 4 2 34 34 H 1.09002 * 110.61286 * 217.50722 * 6 5 4 35 35 H 1.09001 * 110.55424 * 94.70375 * 6 5 4 36 36 H 0.97002 * 120.00493 * 0.02562 * 11 9 7 37 37 H 0.97005 * 119.99854 * 0.02562 * 12 11 9 38 38 H 1.08004 * 119.81739 * 359.97438 * 16 15 13 39 39 H 1.08006 * 119.79693 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.98560 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99619 * 179.97438 * 23 22 20 42 42 H 1.08008 * 120.20346 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 8 2.0327 -0.7237 -1.1443 5 6 3.3873 -1.0872 -0.7995 6 6 3.3192 -1.5057 0.6893 7 6 2.0678 -0.7742 1.2239 8 1 2.3407 -0.0842 2.0225 9 6 1.0443 -1.7667 1.7124 10 8 0.9671 -2.8615 1.1965 11 7 0.2150 -1.4376 2.7224 12 7 -0.7361 -2.3604 3.1768 13 6 -1.5652 -2.0316 4.1873 14 8 -1.4911 -0.9325 4.7009 15 6 -2.5695 -3.0055 4.6666 16 6 -2.6592 -4.2688 4.0718 17 6 -3.5956 -5.1853 4.5150 18 6 -4.4510 -4.8653 5.5462 19 6 -4.3757 -3.5993 6.1568 20 6 -5.2521 -3.2677 7.2163 21 1 -5.6869 -4.0489 7.8220 22 6 -5.5558 -1.9273 7.4795 23 7 -5.3019 -1.0104 6.5814 24 14 -6.3238 -1.4471 9.1132 25 1 -6.5093 -2.6607 9.9487 26 1 -5.4314 -0.4920 9.8180 27 1 -7.6418 -0.8070 8.8715 28 6 -3.4209 -2.6690 5.7123 29 1 -0.3633 0.3831 0.9537 30 1 -0.3634 0.6344 -0.8085 31 1 -0.3634 -1.0174 -0.1450 32 1 3.7241 -1.9223 -1.4137 33 1 4.0527 -0.2330 -0.9240 34 1 4.2112 -1.1756 1.2218 35 1 3.1978 -2.5852 0.7782 36 1 0.2765 -0.5617 3.1348 37 1 -0.7975 -3.2364 2.7647 38 1 -1.9936 -4.5297 3.2622 39 1 -3.6572 -6.1578 4.0490 40 1 -5.1792 -5.5863 5.8869 41 1 -5.5127 -0.0814 6.7638 42 1 -3.3523 -1.6966 6.1774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843642280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:52 Heat of formation + Delta-G solvation = -68.223087 kcal Electronic energy + Delta-G solvation = -26100.791926 eV Core-core repulsion = 22239.654826 eV Total energy + Delta-G solvation = -3861.137101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.92029 -39.48778 -38.28476 -37.09702 -35.06455 -33.83544 -33.03399 -31.82244 -31.28200 -29.64204 -29.43312 -26.65504 -25.38368 -23.48034 -22.42291 -22.23487 -21.05881 -20.85517 -19.48836 -18.09467 -17.73136 -17.14024 -16.63870 -15.87520 -15.76003 -15.65972 -15.25735 -15.07090 -14.69126 -14.31988 -14.13129 -13.89443 -13.30088 -13.18090 -12.85760 -12.64863 -12.60823 -12.52295 -12.32074 -11.75979 -11.59259 -11.38655 -11.28725 -11.24898 -11.16315 -11.01780 -10.80143 -10.55761 -10.29158 -10.17096 -9.94861 -9.77847 -9.32923 -9.29663 -8.21349 -7.71067 -7.60058 -6.86135 -4.48998 1.98620 1.99963 2.40186 2.73721 3.04079 3.08067 3.09807 3.55108 3.69046 3.86793 3.96381 4.14241 4.36597 4.54767 4.62395 4.74347 4.81730 4.95231 5.02655 5.10703 5.28024 5.45761 5.49058 5.51177 5.55081 5.65594 5.77892 5.97418 6.00222 6.20051 6.52278 6.60153 6.79509 6.85824 6.91270 6.96770 7.13489 7.27932 7.59088 7.64852 7.82279 7.92132 8.00659 8.09585 8.41679 8.71582 8.73719 8.76924 10.08122 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002712 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.282935 B =10322.216714 C =10995.327867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.089 3.911 3 H 0.084 0.916 4 O -0.363 6.363 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.134 4.134 8 H 0.108 0.892 9 C 0.523 3.477 10 O -0.535 6.535 11 N -0.519 5.519 12 N -0.531 5.531 13 C 0.568 3.432 14 O -0.546 6.546 15 C -0.122 4.122 16 C -0.217 4.217 17 C -0.095 4.095 18 C -0.207 4.207 19 C 0.098 3.902 20 C -0.457 4.457 21 H 0.083 0.917 22 C 0.072 3.928 23 N -0.785 5.785 24 Si 0.911 3.089 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.273 1.273 28 C -0.087 4.087 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.428 0.572 37 H 0.431 0.569 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.284 0.716 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 3.633 -9.109 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.102 0.898 4 O -0.282 6.282 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.157 4.157 8 H 0.126 0.874 9 C 0.308 3.692 10 O -0.410 6.410 11 N -0.265 5.265 12 N -0.282 5.282 13 C 0.360 3.640 14 O -0.422 6.422 15 C -0.126 4.126 16 C -0.238 4.238 17 C -0.113 4.113 18 C -0.227 4.227 19 C 0.095 3.905 20 C -0.485 4.485 21 H 0.101 0.899 22 C -0.147 4.147 23 N -0.409 5.409 24 Si 0.736 3.264 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.107 4.107 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.270 0.730 37 H 0.275 0.725 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.689 3.850 -9.349 17.018 hybrid contribution -0.237 0.369 0.848 0.955 sum 13.452 4.220 -8.500 16.463 Atomic orbital electron populations 1.22001 0.92603 1.04055 1.03178 1.22890 0.95878 0.94889 0.83248 0.89811 1.89203 1.27118 1.74419 1.37455 1.23446 0.84628 0.99974 0.94850 1.23026 0.95731 1.02991 0.96194 1.22729 0.95213 0.97494 1.00284 0.87373 1.20359 0.81397 0.88830 0.78578 1.90724 1.70725 1.22900 1.56684 1.44915 1.31023 1.14837 1.35723 1.45207 1.31355 1.14212 1.37400 1.19124 0.79617 0.88026 0.77255 1.90711 1.70964 1.22978 1.57585 1.19174 0.98476 0.93519 1.01456 1.20382 1.04453 0.94518 1.04410 1.20448 0.96080 0.97419 0.97363 1.21150 1.02599 0.98975 0.99984 1.17602 0.90706 0.90712 0.91463 1.19638 1.23715 0.92457 1.12733 0.89912 1.25983 0.94433 0.96376 0.97917 1.69780 1.35504 1.02967 1.32644 0.86203 0.79011 0.79508 0.81723 1.18309 1.19554 1.19873 1.21650 0.92602 1.01133 0.95309 0.90666 0.91050 0.91015 0.88721 0.92073 0.89644 0.88687 0.72994 0.72525 0.89061 0.88595 0.88383 0.90446 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.53 37.16 0.32 -1.43 16 2 C 0.09 0.86 3.83 -25.95 -0.10 0.76 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 O -0.36 -4.21 11.34 -35.23 -0.40 -4.61 16 5 C 0.05 0.40 7.64 38.11 0.29 0.69 16 6 C -0.14 -1.19 6.62 -25.00 -0.17 -1.36 16 7 C -0.13 -1.26 3.41 -90.20 -0.31 -1.57 16 8 H 0.11 0.70 8.14 -51.92 -0.42 0.28 16 9 C 0.52 6.99 4.96 -10.99 -0.05 6.93 16 10 O -0.53 -8.94 15.61 5.56 0.09 -8.85 16 11 N -0.52 -7.40 5.77 31.22 0.18 -7.22 16 12 N -0.53 -9.20 6.21 30.54 0.19 -9.01 16 13 C 0.57 11.96 7.89 -12.31 -0.10 11.86 16 14 O -0.55 -12.63 16.17 5.32 0.09 -12.55 16 15 C -0.12 -2.79 5.87 -105.04 -0.62 -3.40 16 16 C -0.22 -4.53 9.55 -38.92 -0.37 -4.91 16 17 C -0.09 -1.99 10.01 -39.73 -0.40 -2.39 16 18 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 19 C 0.10 2.51 5.57 -106.87 -0.60 1.92 16 20 C -0.46 -11.64 9.06 -37.73 -0.34 -11.99 16 21 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 22 C 0.07 1.76 5.17 -17.34 -0.09 1.67 16 23 N -0.78 -20.13 10.89 55.55 0.61 -19.52 16 24 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.09 -2.23 8.23 -38.45 -0.32 -2.55 16 29 H 0.07 0.77 7.63 -51.92 -0.40 0.38 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.97 7.30 -51.93 -0.38 0.59 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.00 6.94 -51.93 -0.36 0.64 16 36 H 0.43 5.49 8.00 -182.60 -1.46 4.03 16 37 H 0.43 7.26 6.02 -182.59 -1.10 6.16 16 38 H 0.09 1.64 6.38 -52.48 -0.33 1.30 16 39 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.14 3.78 5.71 -52.48 -0.30 3.48 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.83 352.18 -9.46 -40.29 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.26 Total: 13.85 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.22 Total: -10.92 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.97 Total: -35.75 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.23 Total: -26.00 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.83 -9.46 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843642280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.928 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds