Wall clock time and date at job start Tue Mar 31 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.42231 * 2 1 4 4 O 1.44424 * 110.37087 * 237.68716 * 2 1 3 5 5 C 1.44421 * 105.27775 * 200.65603 * 4 2 1 6 6 C 1.54801 * 104.85494 * 40.46506 * 5 4 2 7 7 C 1.54483 * 110.37416 * 122.31446 * 2 1 3 8 8 H 1.09007 * 110.50839 * 261.59221 * 7 2 1 9 9 C 1.50704 * 110.50976 * 24.15884 * 7 2 1 10 10 O 1.21277 * 119.99547 * 84.20625 * 9 7 2 11 11 N 1.34770 * 120.00117 * 264.20085 * 9 7 2 12 12 N 1.40100 * 120.00202 * 180.02562 * 11 9 7 13 13 C 1.34777 * 120.00528 * 179.97438 * 12 11 9 14 14 O 1.21547 * 119.99705 * 0.27633 * 13 12 11 15 15 C 1.47886 * 120.00334 * 179.97438 * 13 12 11 16 16 C 1.39919 * 120.02469 * 0.02562 * 15 13 12 17 17 C 1.38321 * 120.35892 * 179.97438 * 16 15 13 18 18 C 1.37750 * 120.41654 * 0.02562 * 17 16 15 19 19 C 1.40758 * 120.03338 * 359.97438 * 18 17 16 20 20 C 1.41442 * 120.17423 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00170 * 24.69617 * 20 19 18 22 22 C 1.39937 * 119.99516 * 204.69625 * 20 19 18 23 23 N 1.30828 * 120.00245 * 16.22643 * 22 20 19 24 24 Si 1.86805 * 119.99760 * 196.22607 * 22 20 19 25 25 H 1.48506 * 109.46827 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47100 * 120.00034 * 24 22 20 27 27 H 1.48503 * 109.47096 * 240.00376 * 24 22 20 28 28 C 1.38987 * 120.02624 * 179.72301 * 15 13 12 29 29 H 1.09009 * 109.46792 * 291.88241 * 1 2 3 30 30 H 1.08997 * 109.47315 * 51.88071 * 1 2 3 31 31 H 1.09005 * 109.47148 * 171.88890 * 1 2 3 32 32 H 1.08998 * 110.37334 * 159.34607 * 5 4 2 33 33 H 1.08997 * 110.37234 * 281.57520 * 5 4 2 34 34 H 1.09002 * 110.61286 * 217.50722 * 6 5 4 35 35 H 1.09001 * 110.55424 * 94.70375 * 6 5 4 36 36 H 0.97002 * 120.00493 * 0.02562 * 11 9 7 37 37 H 0.97005 * 119.99854 * 0.02562 * 12 11 9 38 38 H 1.08004 * 119.81739 * 359.97438 * 16 15 13 39 39 H 1.08006 * 119.79693 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.98560 * 180.02562 * 18 17 16 41 41 H 0.96996 * 119.99619 * 179.97438 * 23 22 20 42 42 H 1.08008 * 120.20346 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 8 2.0327 -0.7237 -1.1443 5 6 3.3873 -1.0872 -0.7995 6 6 3.3192 -1.5057 0.6893 7 6 2.0678 -0.7742 1.2239 8 1 2.3407 -0.0842 2.0225 9 6 1.0443 -1.7667 1.7124 10 8 0.9671 -2.8615 1.1965 11 7 0.2150 -1.4376 2.7224 12 7 -0.7361 -2.3604 3.1768 13 6 -1.5652 -2.0316 4.1873 14 8 -1.4911 -0.9325 4.7009 15 6 -2.5695 -3.0055 4.6666 16 6 -2.6592 -4.2688 4.0718 17 6 -3.5956 -5.1853 4.5150 18 6 -4.4510 -4.8653 5.5462 19 6 -4.3757 -3.5993 6.1568 20 6 -5.2521 -3.2677 7.2163 21 1 -5.6869 -4.0489 7.8220 22 6 -5.5558 -1.9273 7.4795 23 7 -5.3019 -1.0104 6.5814 24 14 -6.3238 -1.4471 9.1132 25 1 -6.5093 -2.6607 9.9487 26 1 -5.4314 -0.4920 9.8180 27 1 -7.6418 -0.8070 8.8715 28 6 -3.4209 -2.6690 5.7123 29 1 -0.3633 0.3831 0.9537 30 1 -0.3634 0.6344 -0.8085 31 1 -0.3634 -1.0174 -0.1450 32 1 3.7241 -1.9223 -1.4137 33 1 4.0527 -0.2330 -0.9240 34 1 4.2112 -1.1756 1.2218 35 1 3.1978 -2.5852 0.7782 36 1 0.2765 -0.5617 3.1348 37 1 -0.7975 -3.2364 2.7647 38 1 -1.9936 -4.5297 3.2622 39 1 -3.6572 -6.1578 4.0490 40 1 -5.1792 -5.5863 5.8869 41 1 -5.5127 -0.0814 6.7638 42 1 -3.3523 -1.6966 6.1774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843642280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:52 Heat of formation + Delta-G solvation = -89.264672 kcal Electronic energy + Delta-G solvation = -26101.704358 eV Core-core repulsion = 22239.654826 eV Total energy + Delta-G solvation = -3862.049532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97308 -40.90618 -39.45112 -38.79081 -36.47895 -35.63482 -34.01317 -32.81054 -32.48104 -31.38421 -31.04925 -27.51911 -27.16512 -24.88363 -23.53137 -23.07824 -22.80838 -22.20092 -20.83020 -19.56289 -19.12930 -18.37121 -17.75044 -17.30033 -16.91240 -16.60593 -16.46641 -16.44487 -16.28446 -15.78714 -15.57084 -15.10202 -15.04369 -14.56494 -14.33563 -14.02110 -13.53771 -13.48331 -13.31075 -13.04503 -12.98811 -12.81038 -12.64259 -12.50917 -12.29457 -12.20900 -12.03470 -11.97776 -11.96167 -11.54769 -11.37043 -11.10801 -10.99510 -10.69864 -9.74500 -9.44551 -9.36233 -8.67104 -6.40253 0.23851 0.71182 0.96690 1.28811 1.38507 1.46741 1.54232 1.98343 2.19614 2.74184 2.85572 2.87685 3.32712 3.51665 3.65234 3.68787 3.93236 4.07505 4.17939 4.28193 4.29802 4.35837 4.44652 4.51802 4.56989 4.83225 4.85175 4.89021 4.90131 5.04984 5.08704 5.11421 5.13128 5.28354 5.45792 5.48576 5.60100 5.81741 5.86304 5.91148 6.02554 6.24271 6.41770 6.56812 6.76065 6.86449 6.89832 7.25120 8.29398 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002712 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.282935 B =10322.216714 C =10995.327867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.121 0.879 4 O -0.396 6.396 5 C 0.043 3.957 6 C -0.139 4.139 7 C -0.131 4.131 8 H 0.147 0.853 9 C 0.524 3.476 10 O -0.570 6.570 11 N -0.515 5.515 12 N -0.520 5.520 13 C 0.570 3.430 14 O -0.573 6.573 15 C -0.130 4.130 16 C -0.203 4.203 17 C -0.094 4.094 18 C -0.212 4.212 19 C 0.068 3.932 20 C -0.492 4.492 21 H 0.085 0.915 22 C 0.030 3.970 23 N -0.823 5.823 24 Si 0.984 3.016 25 H -0.253 1.253 26 H -0.269 1.269 27 H -0.265 1.265 28 C -0.121 4.121 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.436 0.564 37 H 0.434 0.566 38 H 0.125 0.875 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.288 0.712 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.591 3.822 -9.777 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.138 0.862 4 O -0.316 6.316 5 C -0.033 4.033 6 C -0.177 4.177 7 C -0.153 4.153 8 H 0.165 0.835 9 C 0.312 3.688 10 O -0.447 6.447 11 N -0.263 5.263 12 N -0.269 5.269 13 C 0.360 3.640 14 O -0.452 6.452 15 C -0.135 4.135 16 C -0.223 4.223 17 C -0.112 4.112 18 C -0.232 4.232 19 C 0.065 3.935 20 C -0.521 4.521 21 H 0.103 0.897 22 C -0.185 4.185 23 N -0.449 5.449 24 Si 0.804 3.196 25 H -0.176 1.176 26 H -0.194 1.194 27 H -0.190 1.190 28 C -0.141 4.141 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.279 0.721 37 H 0.279 0.721 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.454 4.014 -10.049 18.866 hybrid contribution -0.653 0.193 0.848 1.087 sum 14.801 4.207 -9.202 17.928 Atomic orbital electron populations 1.22002 0.94189 1.02035 1.03710 1.23072 0.94726 0.96421 0.82655 0.86197 1.89173 1.28923 1.75008 1.38462 1.23661 0.83721 1.01284 0.94602 1.23069 0.96481 1.01355 0.96804 1.22931 0.93992 0.97071 1.01339 0.83542 1.21271 0.81116 0.89099 0.77266 1.90708 1.71648 1.24786 1.57549 1.45184 1.30371 1.14580 1.36181 1.44857 1.31148 1.14844 1.36013 1.18781 0.79967 0.87287 0.77967 1.90688 1.71843 1.23897 1.58777 1.19426 0.98405 0.94864 1.00797 1.20800 1.04118 0.93302 1.04107 1.20891 0.94847 0.99059 0.96355 1.21438 1.03238 0.98235 1.00312 1.17954 0.91146 0.91987 0.92370 1.19900 1.24968 0.93379 1.13841 0.89673 1.26849 0.94599 0.95941 1.01154 1.69869 1.37055 1.03367 1.34600 0.85128 0.78172 0.79186 0.77079 1.17585 1.19354 1.19002 1.21460 0.94679 1.00578 0.97410 0.90330 0.90217 0.94394 0.88741 0.89078 0.86252 0.91267 0.72076 0.72123 0.85688 0.84523 0.87049 0.90148 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.53 71.98 0.61 -2.73 16 2 C 0.09 1.48 3.83 31.10 0.12 1.60 16 3 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 4 O -0.40 -8.44 11.34 -148.98 -1.69 -10.13 16 5 C 0.04 0.60 7.64 72.60 0.55 1.16 16 6 C -0.14 -1.95 6.62 31.72 0.21 -1.74 16 7 C -0.13 -2.08 3.41 -10.52 -0.04 -2.11 16 8 H 0.15 1.23 8.14 -2.38 -0.02 1.21 16 9 C 0.52 13.33 4.96 87.66 0.43 13.76 16 10 O -0.57 -18.73 15.61 -3.02 -0.05 -18.78 16 11 N -0.52 -14.15 5.77 -173.54 -1.00 -15.15 16 12 N -0.52 -17.71 6.21 -175.58 -1.09 -18.80 16 13 C 0.57 24.21 7.89 86.80 0.68 24.89 16 14 O -0.57 -27.19 16.17 -3.86 -0.06 -27.25 16 15 C -0.13 -6.05 5.87 -20.14 -0.12 -6.17 16 16 C -0.20 -8.18 9.55 22.70 0.22 -7.96 16 17 C -0.09 -3.74 10.01 22.17 0.22 -3.52 16 18 C -0.21 -9.77 9.78 22.77 0.22 -9.55 16 19 C 0.07 3.59 5.57 -21.32 -0.12 3.48 16 20 C -0.49 -26.01 9.06 23.47 0.21 -25.80 16 21 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 22 C 0.03 1.50 5.17 85.25 0.44 1.94 16 23 N -0.82 -44.27 10.89 21.82 0.24 -44.03 16 24 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 25 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 28 C -0.12 -6.48 8.23 23.00 0.19 -6.29 16 29 H 0.08 1.53 7.63 -2.38 -0.02 1.51 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.02 7.30 -2.38 -0.02 1.01 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.36 6.94 -2.39 -0.02 1.34 16 36 H 0.44 10.62 8.00 -213.32 -1.71 8.91 16 37 H 0.43 14.16 6.02 -213.31 -1.28 12.87 16 38 H 0.13 4.14 6.38 -2.91 -0.02 4.12 16 39 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 42 H 0.11 6.37 5.71 -2.91 -0.02 6.36 16 Total: -1.00 -71.22 352.18 0.31 -70.91 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -1.91 Total: 41.92 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.85 Total: -19.05 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.85 Total: -77.98 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.80 Total: -56.16 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -71.22 0.31 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843642280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.360 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds