Wall clock time and date at job start Tue Mar 31 2020 12:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.68217 * 2 1 4 4 O 1.44379 * 110.61588 * 237.03473 * 2 1 3 5 5 C 1.43747 * 106.97790 * 201.44061 * 4 2 1 6 6 C 1.54101 * 107.28975 * 26.51633 * 5 4 2 7 7 C 1.54811 * 104.18941 * 357.97129 * 6 5 4 8 8 H 1.08993 * 110.90696 * 97.35167 * 7 6 5 9 9 C 1.50700 * 110.90596 * 220.92374 * 7 6 5 10 10 O 1.21289 * 120.00143 * 118.54493 * 9 7 6 11 11 N 1.34778 * 120.00391 * 298.54008 * 9 7 6 12 12 N 1.40094 * 120.00724 * 179.97438 * 11 9 7 13 13 C 1.34776 * 120.00306 * 179.97438 * 12 11 9 14 14 O 1.21539 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.47890 * 119.99857 * 180.02562 * 13 12 11 16 16 C 1.39918 * 120.02421 * 359.72862 * 15 13 12 17 17 C 1.38329 * 120.35610 * 180.27342 * 16 15 13 18 18 C 1.37754 * 120.41362 * 0.02562 * 17 16 15 19 19 C 1.40750 * 120.04118 * 359.97438 * 18 17 16 20 20 C 1.41431 * 120.18200 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99974 * 334.97712 * 20 19 18 22 22 C 1.39936 * 119.99898 * 154.96911 * 20 19 18 23 23 N 1.30821 * 120.00045 * 342.59451 * 22 20 19 24 24 Si 1.86798 * 119.99845 * 162.59462 * 22 20 19 25 25 H 1.48500 * 109.47227 * 59.99977 * 24 22 20 26 26 H 1.48498 * 109.47215 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47164 * 300.00050 * 24 22 20 28 28 C 1.38996 * 120.02446 * 180.02562 * 15 13 12 29 29 H 1.08997 * 109.46669 * 297.03386 * 1 2 3 30 30 H 1.08998 * 109.46695 * 57.03364 * 1 2 3 31 31 H 1.08995 * 109.47071 * 177.03342 * 1 2 3 32 32 H 1.08997 * 109.88086 * 267.09693 * 5 4 2 33 33 H 1.08999 * 109.88221 * 145.93649 * 5 4 2 34 34 H 1.09004 * 110.48630 * 239.29264 * 6 5 4 35 35 H 1.08999 * 110.60400 * 116.70220 * 6 5 4 36 36 H 0.97003 * 119.99314 * 0.02562 * 11 9 7 37 37 H 0.97003 * 119.99962 * 0.02562 * 12 11 9 38 38 H 1.07996 * 119.82286 * 0.27221 * 16 15 13 39 39 H 1.08004 * 119.79336 * 179.97438 * 17 16 15 40 40 H 1.08000 * 119.97914 * 180.02562 * 18 17 16 41 41 H 0.97004 * 119.99760 * 179.97438 * 23 22 20 42 42 H 1.08000 * 120.19887 * 359.74369 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 8 2.0384 -0.7353 -1.1338 5 6 3.3839 -1.1255 -0.8119 6 6 3.4794 -1.2169 0.7234 7 6 2.0758 -0.7895 1.2171 8 1 1.4551 -1.6607 1.4263 9 6 2.1797 0.0977 2.4308 10 8 1.7553 1.2332 2.3901 11 7 2.7441 -0.3705 3.5616 12 7 2.8412 0.4543 4.6898 13 6 3.4051 -0.0142 5.8207 14 8 3.8299 -1.1522 5.8616 15 6 3.5071 0.8565 7.0117 16 6 3.0234 2.1686 6.9633 17 6 3.1203 2.9907 8.0715 18 6 3.6944 2.5279 9.2351 19 6 4.1865 1.2110 9.3027 20 6 4.7769 0.7330 10.4957 21 1 5.2191 1.4270 11.1951 22 6 4.7881 -0.6392 10.7697 23 7 3.9794 -1.4414 10.1263 24 14 5.9577 -1.3256 12.0544 25 1 5.6709 -0.6993 13.3699 26 1 5.7741 -2.7956 12.1560 27 1 7.3576 -1.0273 11.6589 28 6 4.0891 0.3741 8.1781 29 1 -0.3632 0.4671 0.9154 30 1 -0.3633 0.5592 -0.8622 31 1 -0.3633 -1.0262 -0.0532 32 1 4.0854 -0.3784 -1.1830 33 1 3.6044 -2.0965 -1.2554 34 1 4.2407 -0.5334 1.0997 35 1 3.6983 -2.2385 1.0340 36 1 3.0837 -1.2786 3.5940 37 1 2.5018 1.3625 4.6572 38 1 2.5719 2.5414 6.0558 39 1 2.7443 4.0021 8.0239 40 1 3.7660 3.1757 10.0963 41 1 3.9875 -2.3927 10.3160 42 1 4.4643 -0.6377 8.2198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843642281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:57 Heat of formation + Delta-G solvation = -72.426630 kcal Electronic energy + Delta-G solvation = -25794.016376 eV Core-core repulsion = 21932.696996 eV Total energy + Delta-G solvation = -3861.319380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82800 -39.55102 -38.45716 -37.13551 -35.14690 -33.85618 -33.07467 -31.90931 -31.28130 -29.67652 -29.46887 -26.76870 -25.39248 -23.39138 -22.49950 -22.01407 -21.13417 -20.94349 -19.77472 -18.20141 -17.68645 -17.33460 -16.52124 -15.94718 -15.67207 -15.45182 -15.22616 -15.09778 -14.67682 -14.26672 -14.15400 -14.09979 -13.73712 -13.32188 -12.87212 -12.77967 -12.63244 -12.61973 -12.30434 -11.77682 -11.69015 -11.44259 -11.32171 -11.18687 -11.11204 -11.08128 -10.83601 -10.59249 -10.28868 -10.20554 -9.96647 -9.80486 -9.36177 -9.29545 -8.27209 -7.73865 -7.62584 -6.88769 -4.50534 1.93392 1.95137 2.34257 2.73232 3.02554 3.03950 3.09963 3.41729 3.65817 3.85356 3.95298 4.16405 4.25746 4.50043 4.52860 4.69529 4.82021 4.85994 5.09108 5.23184 5.31543 5.40342 5.45343 5.48911 5.56151 5.57785 5.76518 5.94560 5.97870 6.17593 6.54115 6.57793 6.74505 6.79987 6.88808 6.91978 7.10959 7.25575 7.55546 7.62093 7.78963 7.88715 7.92666 8.06905 8.39073 8.67984 8.71377 8.73922 10.06099 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002593 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.333906 B =10794.304238 C =11607.151321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.096 3.904 3 H 0.086 0.914 4 O -0.373 6.373 5 C 0.050 3.950 6 C -0.152 4.152 7 C -0.133 4.133 8 H 0.119 0.881 9 C 0.521 3.479 10 O -0.539 6.539 11 N -0.516 5.516 12 N -0.531 5.531 13 C 0.569 3.431 14 O -0.545 6.545 15 C -0.121 4.121 16 C -0.218 4.218 17 C -0.094 4.094 18 C -0.207 4.207 19 C 0.099 3.901 20 C -0.458 4.458 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.784 5.784 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.087 4.087 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.430 0.570 37 H 0.431 0.569 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.286 0.714 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -1.223 -15.853 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.039 3.961 3 H 0.104 0.896 4 O -0.292 6.292 5 C -0.027 4.027 6 C -0.190 4.190 7 C -0.156 4.156 8 H 0.137 0.863 9 C 0.307 3.693 10 O -0.415 6.415 11 N -0.261 5.261 12 N -0.282 5.282 13 C 0.360 3.640 14 O -0.422 6.422 15 C -0.126 4.126 16 C -0.239 4.239 17 C -0.112 4.112 18 C -0.227 4.227 19 C 0.096 3.904 20 C -0.487 4.487 21 H 0.101 0.899 22 C -0.146 4.146 23 N -0.408 5.408 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.107 4.107 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.272 0.728 37 H 0.275 0.725 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.490 -1.542 -16.051 16.316 hybrid contribution 0.564 -0.401 0.831 1.081 sum -1.927 -1.943 -15.220 15.464 Atomic orbital electron populations 1.21781 0.92348 1.02842 1.03278 1.22940 0.95804 0.95381 0.82023 0.89624 1.88908 1.27683 1.73848 1.38775 1.23113 0.84846 1.00913 0.93817 1.23032 0.95645 1.03794 0.96577 1.22902 0.99458 0.99818 0.93411 0.86318 1.20380 0.77919 0.88380 0.82665 1.90737 1.48503 1.18957 1.83302 1.44823 1.61532 1.14631 1.05146 1.45226 1.64630 1.14210 1.04179 1.19144 0.75947 0.87527 0.81380 1.90712 1.48907 1.19216 1.83327 1.19162 1.07136 0.93814 0.92492 1.20369 1.10892 0.94030 0.98571 1.20451 0.99658 0.97601 0.93529 1.21145 1.06379 0.97912 0.97302 1.17580 0.89478 0.90851 0.92452 1.19573 1.32849 0.92152 1.04106 0.89937 1.25976 0.94495 0.97147 0.97015 1.69770 1.28804 1.06088 1.36121 0.86296 0.81308 0.78036 0.80748 1.18898 1.20194 1.18673 1.21610 0.98530 1.01020 0.89533 0.90374 0.91497 0.91821 0.91927 0.89324 0.89779 0.89041 0.72847 0.72470 0.89058 0.88575 0.88364 0.90300 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.66 37.16 0.36 -0.97 16 2 C 0.10 0.97 3.02 -25.67 -0.08 0.90 16 3 H 0.09 0.96 7.53 -51.93 -0.39 0.57 16 4 O -0.37 -3.85 11.22 -35.23 -0.40 -4.24 16 5 C 0.05 0.39 7.70 37.73 0.29 0.68 16 6 C -0.15 -1.17 6.55 -25.20 -0.16 -1.33 16 7 C -0.13 -1.25 2.95 -89.76 -0.26 -1.51 16 8 H 0.12 0.93 8.06 -51.93 -0.42 0.51 16 9 C 0.52 6.66 7.17 -10.98 -0.08 6.58 16 10 O -0.54 -8.42 15.53 5.55 0.09 -8.33 16 11 N -0.52 -7.22 6.21 31.22 0.19 -7.03 16 12 N -0.53 -9.06 6.21 30.54 0.19 -8.87 16 13 C 0.57 11.86 7.89 -12.31 -0.10 11.76 16 14 O -0.55 -12.55 16.17 5.33 0.09 -12.47 16 15 C -0.12 -2.76 5.87 -105.04 -0.62 -3.37 16 16 C -0.22 -4.49 9.55 -38.92 -0.37 -4.87 16 17 C -0.09 -1.95 10.01 -39.72 -0.40 -2.35 16 18 C -0.21 -4.76 9.78 -38.81 -0.38 -5.14 16 19 C 0.10 2.53 5.57 -106.87 -0.59 1.93 16 20 C -0.46 -11.61 9.05 -37.73 -0.34 -11.95 16 21 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 22 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 23 N -0.78 -20.02 10.97 55.55 0.61 -19.41 16 24 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 C -0.09 -2.21 8.23 -38.44 -0.32 -2.53 16 29 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.43 5.48 8.00 -182.60 -1.46 4.02 16 37 H 0.43 7.07 6.02 -182.60 -1.10 5.97 16 38 H 0.09 1.61 6.38 -52.49 -0.33 1.27 16 39 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 42 H 0.14 3.71 5.77 -52.49 -0.30 3.41 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -29.76 356.00 -9.38 -39.13 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -7.34 Total: 13.19 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.14 Total: -10.48 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.99 Total: -35.30 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.22 Total: -25.04 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.76 -9.38 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843642281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.292 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds