Wall clock time and date at job start Tue Mar 31 2020 12:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.42278 * 2 1 4 4 O 1.44430 * 110.36856 * 237.69627 * 2 1 3 5 5 C 1.44422 * 105.27477 * 200.65559 * 4 2 1 6 6 C 1.54486 * 104.80296 * 40.51065 * 5 4 2 7 7 C 1.54479 * 110.37512 * 122.31358 * 2 1 3 8 8 H 1.08996 * 110.51122 * 261.45136 * 7 2 1 9 9 C 1.50702 * 110.62702 * 24.10381 * 7 2 1 10 10 O 1.21280 * 119.99809 * 80.57135 * 9 7 2 11 11 N 1.34772 * 119.99881 * 260.57309 * 9 7 2 12 12 N 1.40106 * 119.99855 * 180.02562 * 11 9 7 13 13 C 1.34776 * 120.00330 * 179.97438 * 12 11 9 14 14 O 1.21586 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.47633 * 120.00335 * 179.97438 * 13 12 11 16 16 C 1.40020 * 119.89507 * 359.73219 * 15 13 12 17 17 C 1.36321 * 120.10608 * 179.75850 * 16 15 13 18 18 C 1.40890 * 119.89076 * 0.53169 * 17 16 15 19 19 C 1.41106 * 120.10217 * 179.69802 * 18 17 16 20 20 H 1.07999 * 120.00101 * 208.09349 * 19 18 17 21 21 C 1.40227 * 119.99967 * 28.09574 * 19 18 17 22 22 N 1.30640 * 120.00141 * 12.86067 * 21 19 18 23 23 Si 1.86799 * 119.99760 * 192.86619 * 21 19 18 24 24 H 1.48505 * 109.47391 * 59.99848 * 23 21 19 25 25 H 1.48501 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47200 * 299.99423 * 23 21 19 27 27 C 1.40884 * 119.79070 * 359.71816 * 18 17 16 28 28 C 1.36319 * 119.89825 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47476 * 176.92776 * 1 2 3 30 30 H 1.09005 * 109.46791 * 296.92615 * 1 2 3 31 31 H 1.08998 * 109.47077 * 56.92153 * 1 2 3 32 32 H 1.09004 * 110.37619 * 159.33769 * 5 4 2 33 33 H 1.09001 * 110.37608 * 281.56989 * 5 4 2 34 34 H 1.08995 * 110.51092 * 94.66703 * 6 5 4 35 35 H 1.08997 * 110.51178 * 217.37560 * 6 5 4 36 36 H 0.96996 * 120.00271 * 359.97438 * 11 9 7 37 37 H 0.97004 * 119.99646 * 359.97438 * 12 11 9 38 38 H 1.08002 * 119.94484 * 359.97438 * 16 15 13 39 39 H 1.07996 * 120.05476 * 180.23543 * 17 16 15 40 40 H 0.96999 * 120.00350 * 180.02562 * 22 21 19 41 41 H 1.08002 * 120.05067 * 179.97438 * 27 18 17 42 42 H 1.07995 * 119.94831 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0327 -0.7236 -1.1444 5 6 3.3873 -1.0871 -0.7998 6 6 3.3178 -1.5058 0.6857 7 6 2.0679 -0.7741 1.2239 8 1 2.3431 -0.0841 2.0214 9 6 1.0458 -1.7665 1.7154 10 8 0.9233 -2.8370 1.1585 11 7 0.2679 -1.4645 2.7737 12 7 -0.6819 -2.3874 3.2310 13 6 -1.4594 -2.0857 4.2897 14 8 -1.3369 -1.0124 4.8476 15 6 -2.4607 -3.0579 4.7712 16 6 -2.6045 -4.2906 4.1229 17 6 -3.5242 -5.1936 4.5669 18 6 -4.3385 -4.8801 5.6731 19 6 -5.2964 -5.8089 6.1325 20 1 -6.1894 -5.4618 6.6309 21 6 -5.0887 -7.1825 5.9420 22 7 -3.9144 -7.6208 5.5738 23 14 -6.4913 -8.3858 6.2146 24 1 -7.6089 -8.0606 5.2923 25 1 -6.0168 -9.7676 5.9487 26 1 -6.9634 -8.2858 7.6190 27 6 -4.1937 -3.6364 6.3188 28 6 -3.2676 -2.7420 5.8709 29 1 -0.3634 -1.0262 -0.0551 30 1 -0.3633 0.4654 0.9163 31 1 -0.3633 0.5609 -0.8611 32 1 3.7241 -1.9223 -1.4139 33 1 4.0528 -0.2329 -0.9242 34 1 3.1955 -2.5853 0.7729 35 1 4.2109 -1.1774 1.2172 36 1 0.3662 -0.6086 3.2193 37 1 -0.7798 -3.2436 2.7856 38 1 -1.9833 -4.5279 3.2718 39 1 -3.6318 -6.1456 4.0686 40 1 -3.7708 -8.5709 5.4417 41 1 -4.8160 -3.3916 7.1669 42 1 -3.1562 -1.7882 6.3650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843658623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:10 Heat of formation + Delta-G solvation = -72.463611 kcal Electronic energy + Delta-G solvation = -25867.248216 eV Core-core repulsion = 22005.927233 eV Total energy + Delta-G solvation = -3861.320984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.87907 -39.39775 -38.24543 -37.16847 -34.97648 -33.94067 -32.99764 -31.81854 -31.26047 -29.67592 -29.50414 -26.72955 -25.84491 -23.08717 -22.39141 -22.03387 -21.05313 -20.79995 -19.58077 -17.97575 -17.57983 -17.29785 -16.81805 -16.02371 -15.79282 -15.66129 -15.43893 -15.11353 -14.41433 -14.13311 -14.07027 -13.86496 -13.30278 -13.15251 -12.86472 -12.65188 -12.50684 -12.30928 -12.18434 -12.01675 -11.61498 -11.51745 -11.36249 -11.30792 -11.24994 -11.11511 -10.94894 -10.68754 -10.23682 -10.13552 -9.92692 -9.62710 -9.47521 -9.27547 -8.13712 -7.80395 -7.58389 -7.05791 -4.68932 2.04104 2.08959 2.43238 2.90067 2.92496 2.95261 2.95860 3.56577 3.68972 3.74362 4.01017 4.17795 4.39122 4.48959 4.66604 4.76913 4.85164 4.97296 5.04299 5.11954 5.28901 5.47041 5.47411 5.54426 5.65062 5.74322 5.79283 5.96974 5.97865 6.21204 6.54119 6.69842 6.75847 6.84904 6.94081 6.98756 7.05762 7.36231 7.55830 7.67379 7.78210 7.98911 8.00660 8.09395 8.32837 8.55726 8.66208 8.87883 9.85811 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.002501 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.733635 B =11193.526069 C =11848.435563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.090 3.910 3 H 0.083 0.917 4 O -0.363 6.363 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.133 4.133 8 H 0.106 0.894 9 C 0.521 3.479 10 O -0.535 6.535 11 N -0.518 5.518 12 N -0.536 5.536 13 C 0.575 3.425 14 O -0.576 6.576 15 C -0.278 4.278 16 C -0.064 4.064 17 C -0.171 4.171 18 C 0.131 3.869 19 C -0.439 4.439 20 H 0.086 0.914 21 C 0.072 3.928 22 N -0.774 5.774 23 Si 0.917 3.083 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.262 1.262 27 C -0.236 4.236 28 C -0.018 4.018 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.427 0.573 37 H 0.429 0.571 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.288 0.712 41 H 0.101 0.899 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 9.318 -8.335 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.101 0.899 4 O -0.282 6.282 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.156 4.156 8 H 0.125 0.875 9 C 0.306 3.694 10 O -0.410 6.410 11 N -0.264 5.264 12 N -0.286 5.286 13 C 0.371 3.629 14 O -0.457 6.457 15 C -0.284 4.284 16 C -0.083 4.083 17 C -0.190 4.190 18 C 0.127 3.873 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.150 4.150 22 N -0.397 5.397 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.186 1.186 27 C -0.255 4.255 28 C -0.037 4.037 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.268 0.732 37 H 0.273 0.727 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.857 9.016 -8.588 16.520 hybrid contribution -0.289 -0.600 0.417 0.786 sum 10.569 8.416 -8.171 15.789 Atomic orbital electron populations 1.21989 0.92676 1.04074 1.03071 1.22874 0.95862 0.94813 0.83297 0.89898 1.89204 1.27099 1.74450 1.37420 1.23389 0.84637 0.99967 0.94874 1.22968 0.95794 1.02945 0.96233 1.22710 0.95277 0.97467 1.00192 0.87532 1.20336 0.81568 0.88511 0.78959 1.90738 1.69289 1.24412 1.56583 1.44870 1.33069 1.16719 1.31731 1.45192 1.33530 1.16123 1.33797 1.18845 0.79556 0.87335 0.77152 1.90644 1.71267 1.25484 1.58353 1.18589 1.06582 0.96617 1.06626 1.20522 0.97466 0.93015 0.97291 1.21014 0.99790 0.99735 0.98448 1.17824 0.89855 0.90998 0.88597 1.19851 1.05175 0.90508 1.31164 0.89625 1.26116 0.96524 0.99897 0.92424 1.69700 1.21908 1.17336 1.30742 0.86200 0.81107 0.78357 0.80256 1.18464 1.20002 1.18636 1.20751 1.04124 0.97321 1.03326 1.20319 0.92967 0.97283 0.93141 0.90964 0.90740 0.91091 0.88717 0.92086 0.88792 0.89665 0.73160 0.72726 0.89151 0.85920 0.90047 0.88098 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.65 37.16 0.32 -1.40 16 2 C 0.09 0.87 3.84 -25.95 -0.10 0.77 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 O -0.36 -4.26 11.34 -35.23 -0.40 -4.66 16 5 C 0.05 0.41 7.63 37.94 0.29 0.70 16 6 C -0.14 -1.23 6.59 -25.16 -0.17 -1.40 16 7 C -0.13 -1.27 3.42 -90.20 -0.31 -1.58 16 8 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 9 C 0.52 7.11 4.85 -10.99 -0.05 7.06 16 10 O -0.53 -9.25 15.54 5.56 0.09 -9.16 16 11 N -0.52 -7.45 6.25 31.22 0.20 -7.26 16 12 N -0.54 -9.41 6.21 30.48 0.19 -9.22 16 13 C 0.58 11.77 7.88 -12.43 -0.10 11.67 16 14 O -0.58 -12.62 16.16 5.29 0.09 -12.54 16 15 C -0.28 -6.16 5.89 -104.73 -0.62 -6.78 16 16 C -0.06 -1.40 9.47 -39.60 -0.38 -1.78 16 17 C -0.17 -4.12 8.60 -39.27 -0.34 -4.46 16 18 C 0.13 3.25 5.55 -106.81 -0.59 2.65 16 19 C -0.44 -10.67 9.05 -37.75 -0.34 -11.01 16 20 H 0.09 1.97 7.88 -52.49 -0.41 1.55 16 21 C 0.07 1.64 5.22 -17.31 -0.09 1.55 16 22 N -0.77 -18.37 10.89 55.56 0.61 -17.77 16 23 Si 0.92 17.07 29.58 -169.99 -5.03 12.05 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 26 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 27 C -0.24 -5.50 9.73 -39.27 -0.38 -5.89 16 28 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 29 H 0.07 0.98 6.91 -51.93 -0.36 0.62 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 1.03 7.03 -51.93 -0.36 0.66 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.43 5.42 7.98 -182.60 -1.46 3.97 16 37 H 0.43 7.53 6.00 -182.59 -1.10 6.44 16 38 H 0.09 1.76 6.37 -52.49 -0.33 1.42 16 39 H 0.12 3.03 6.23 -52.49 -0.33 2.70 16 40 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 41 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -29.75 352.55 -9.45 -39.20 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.27 Total: 14.71 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.23 Total: -10.66 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.99 Total: -34.24 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.23 Total: -26.36 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.75 -9.45 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.264 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds