Wall clock time and date at job start Tue Mar 31 2020 12:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.42278 * 2 1 4 4 O 1.44430 * 110.36856 * 237.69627 * 2 1 3 5 5 C 1.44422 * 105.27477 * 200.65559 * 4 2 1 6 6 C 1.54486 * 104.80296 * 40.51065 * 5 4 2 7 7 C 1.54479 * 110.37512 * 122.31358 * 2 1 3 8 8 H 1.08996 * 110.51122 * 261.45136 * 7 2 1 9 9 C 1.50702 * 110.62702 * 24.10381 * 7 2 1 10 10 O 1.21280 * 119.99809 * 80.57135 * 9 7 2 11 11 N 1.34772 * 119.99881 * 260.57309 * 9 7 2 12 12 N 1.40106 * 119.99855 * 180.02562 * 11 9 7 13 13 C 1.34776 * 120.00330 * 179.97438 * 12 11 9 14 14 O 1.21586 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.47633 * 120.00335 * 179.97438 * 13 12 11 16 16 C 1.40020 * 119.89507 * 359.73219 * 15 13 12 17 17 C 1.36321 * 120.10608 * 179.75850 * 16 15 13 18 18 C 1.40890 * 119.89076 * 0.53169 * 17 16 15 19 19 C 1.41106 * 120.10217 * 179.69802 * 18 17 16 20 20 H 1.07999 * 120.00101 * 208.09349 * 19 18 17 21 21 C 1.40227 * 119.99967 * 28.09574 * 19 18 17 22 22 N 1.30640 * 120.00141 * 12.86067 * 21 19 18 23 23 Si 1.86799 * 119.99760 * 192.86619 * 21 19 18 24 24 H 1.48505 * 109.47391 * 59.99848 * 23 21 19 25 25 H 1.48501 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47200 * 299.99423 * 23 21 19 27 27 C 1.40884 * 119.79070 * 359.71816 * 18 17 16 28 28 C 1.36319 * 119.89825 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47476 * 176.92776 * 1 2 3 30 30 H 1.09005 * 109.46791 * 296.92615 * 1 2 3 31 31 H 1.08998 * 109.47077 * 56.92153 * 1 2 3 32 32 H 1.09004 * 110.37619 * 159.33769 * 5 4 2 33 33 H 1.09001 * 110.37608 * 281.56989 * 5 4 2 34 34 H 1.08995 * 110.51092 * 94.66703 * 6 5 4 35 35 H 1.08997 * 110.51178 * 217.37560 * 6 5 4 36 36 H 0.96996 * 120.00271 * 359.97438 * 11 9 7 37 37 H 0.97004 * 119.99646 * 359.97438 * 12 11 9 38 38 H 1.08002 * 119.94484 * 359.97438 * 16 15 13 39 39 H 1.07996 * 120.05476 * 180.23543 * 17 16 15 40 40 H 0.96999 * 120.00350 * 180.02562 * 22 21 19 41 41 H 1.08002 * 120.05067 * 179.97438 * 27 18 17 42 42 H 1.07995 * 119.94831 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 8 2.0327 -0.7236 -1.1444 5 6 3.3873 -1.0871 -0.7998 6 6 3.3178 -1.5058 0.6857 7 6 2.0679 -0.7741 1.2239 8 1 2.3431 -0.0841 2.0214 9 6 1.0458 -1.7665 1.7154 10 8 0.9233 -2.8370 1.1585 11 7 0.2679 -1.4645 2.7737 12 7 -0.6819 -2.3874 3.2310 13 6 -1.4594 -2.0857 4.2897 14 8 -1.3369 -1.0124 4.8476 15 6 -2.4607 -3.0579 4.7712 16 6 -2.6045 -4.2906 4.1229 17 6 -3.5242 -5.1936 4.5669 18 6 -4.3385 -4.8801 5.6731 19 6 -5.2964 -5.8089 6.1325 20 1 -6.1894 -5.4618 6.6309 21 6 -5.0887 -7.1825 5.9420 22 7 -3.9144 -7.6208 5.5738 23 14 -6.4913 -8.3858 6.2146 24 1 -7.6089 -8.0606 5.2923 25 1 -6.0168 -9.7676 5.9487 26 1 -6.9634 -8.2858 7.6190 27 6 -4.1937 -3.6364 6.3188 28 6 -3.2676 -2.7420 5.8709 29 1 -0.3634 -1.0262 -0.0551 30 1 -0.3633 0.4654 0.9163 31 1 -0.3633 0.5609 -0.8611 32 1 3.7241 -1.9223 -1.4139 33 1 4.0528 -0.2329 -0.9242 34 1 3.1955 -2.5853 0.7729 35 1 4.2109 -1.1774 1.2172 36 1 0.3662 -0.6086 3.2193 37 1 -0.7798 -3.2436 2.7856 38 1 -1.9833 -4.5279 3.2718 39 1 -3.6318 -6.1456 4.0686 40 1 -3.7708 -8.5709 5.4417 41 1 -4.8160 -3.3916 7.1669 42 1 -3.1562 -1.7882 6.3650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843658623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:09 Heat of formation + Delta-G solvation = -92.094982 kcal Electronic energy + Delta-G solvation = -25868.099496 eV Core-core repulsion = 22005.927233 eV Total energy + Delta-G solvation = -3862.172264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91954 -40.80981 -39.45975 -38.82683 -36.38086 -35.69981 -33.96929 -32.76282 -32.49644 -31.39018 -31.16234 -27.89474 -27.22004 -24.36206 -23.48349 -23.06908 -22.79276 -22.19428 -20.85990 -19.40990 -19.13199 -18.64135 -17.85703 -17.29331 -17.12002 -16.59447 -16.45010 -16.33911 -15.88485 -15.75492 -15.52142 -15.08844 -15.00770 -14.53971 -14.00475 -13.96045 -13.73109 -13.47936 -13.33137 -13.29222 -13.01536 -12.86229 -12.72159 -12.49785 -12.38896 -12.25359 -12.03116 -11.97413 -11.81347 -11.41856 -11.33179 -11.17712 -10.93418 -10.69063 -9.67960 -9.57814 -9.30124 -8.78556 -6.53037 0.31633 0.81533 1.11256 1.29435 1.39278 1.45307 1.51905 2.03876 2.16206 2.74127 2.88131 2.93670 3.38107 3.55784 3.63525 3.75272 4.06021 4.12551 4.18922 4.23563 4.29367 4.31497 4.41404 4.44902 4.59212 4.84356 4.89264 4.89886 4.90369 4.99621 5.09177 5.09664 5.13711 5.23577 5.51279 5.59059 5.63037 5.80860 5.87116 5.96024 5.96552 6.18541 6.50269 6.52390 6.74025 6.83595 6.85391 7.36581 8.15782 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.002501 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.733635 B =11193.526069 C =11848.435563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.122 0.878 4 O -0.397 6.397 5 C 0.044 3.956 6 C -0.140 4.140 7 C -0.129 4.129 8 H 0.148 0.852 9 C 0.522 3.478 10 O -0.575 6.575 11 N -0.512 5.512 12 N -0.532 5.532 13 C 0.580 3.420 14 O -0.590 6.590 15 C -0.285 4.285 16 C -0.059 4.059 17 C -0.192 4.192 18 C 0.104 3.896 19 C -0.470 4.470 20 H 0.090 0.910 21 C 0.034 3.966 22 N -0.804 5.804 23 Si 0.990 3.010 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.257 1.257 27 C -0.246 4.246 28 C -0.024 4.024 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.437 0.563 37 H 0.429 0.571 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.296 0.704 41 H 0.112 0.888 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 10.620 -8.550 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.140 0.860 4 O -0.317 6.317 5 C -0.032 4.032 6 C -0.178 4.178 7 C -0.152 4.152 8 H 0.166 0.834 9 C 0.310 3.690 10 O -0.452 6.452 11 N -0.260 5.260 12 N -0.280 5.280 13 C 0.375 3.625 14 O -0.472 6.472 15 C -0.291 4.291 16 C -0.078 4.078 17 C -0.211 4.211 18 C 0.101 3.899 19 C -0.497 4.497 20 H 0.108 0.892 21 C -0.184 4.184 22 N -0.427 5.427 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.191 1.191 26 H -0.181 1.181 27 C -0.266 4.266 28 C -0.043 4.043 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.280 0.720 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.150 10.341 -8.814 18.227 hybrid contribution -0.572 -0.937 0.398 1.167 sum 11.578 9.404 -8.416 17.126 Atomic orbital electron populations 1.21995 0.94116 1.01819 1.03955 1.23088 0.94846 0.96376 0.82554 0.86042 1.89173 1.28871 1.75092 1.38541 1.23597 0.83811 1.01263 0.94541 1.23014 0.96706 1.01156 0.96942 1.22908 0.93913 0.96988 1.01365 0.83449 1.21284 0.81336 0.88706 0.77721 1.90724 1.70390 1.26538 1.57598 1.45097 1.32336 1.16433 1.32152 1.44927 1.33624 1.16693 1.32766 1.18448 0.79665 0.86686 0.77745 1.90630 1.71772 1.25797 1.59038 1.18847 1.06847 0.96983 1.06392 1.20699 0.96903 0.92589 0.97595 1.21014 1.01135 0.99960 0.99015 1.18165 0.90623 0.91927 0.89213 1.20138 1.05559 0.91590 1.32396 0.89198 1.26964 0.98832 1.01068 0.91583 1.69744 1.23623 1.18226 1.31144 0.85119 0.77637 0.76071 0.80231 1.18181 1.19097 1.18058 1.20927 1.04676 0.97194 1.03781 1.20495 0.92837 0.97572 0.93407 0.94675 0.89801 0.90337 0.88956 0.88920 0.91693 0.86195 0.71994 0.72772 0.87026 0.87021 0.89273 0.87032 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.65 71.98 0.62 -2.63 16 2 C 0.09 1.47 3.84 31.10 0.12 1.59 16 3 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 4 O -0.40 -8.65 11.34 -148.98 -1.69 -10.34 16 5 C 0.04 0.64 7.63 72.49 0.55 1.19 16 6 C -0.14 -2.08 6.59 31.61 0.21 -1.87 16 7 C -0.13 -2.08 3.42 -10.52 -0.04 -2.12 16 8 H 0.15 1.20 8.12 -2.39 -0.02 1.18 16 9 C 0.52 13.66 4.85 87.66 0.43 14.09 16 10 O -0.57 -20.04 15.54 -3.03 -0.05 -20.08 16 11 N -0.51 -14.05 6.25 -173.54 -1.09 -15.13 16 12 N -0.53 -18.40 6.21 -175.74 -1.09 -19.49 16 13 C 0.58 23.40 7.88 86.72 0.68 24.08 16 14 O -0.59 -25.19 16.16 -3.99 -0.06 -25.25 16 15 C -0.28 -12.66 5.89 -19.93 -0.12 -12.78 16 16 C -0.06 -2.63 9.47 22.25 0.21 -2.42 16 17 C -0.19 -9.56 8.60 22.47 0.19 -9.37 16 18 C 0.10 5.31 5.55 -21.28 -0.12 5.19 16 19 C -0.47 -23.31 9.05 23.46 0.21 -23.10 16 20 H 0.09 4.21 7.88 -2.91 -0.02 4.19 16 21 C 0.03 1.57 5.22 85.35 0.45 2.02 16 22 N -0.80 -38.83 10.89 21.87 0.24 -38.59 16 23 Si 0.99 34.80 29.58 68.60 2.03 36.83 16 24 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 25 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 26 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 27 C -0.25 -11.72 9.73 22.47 0.22 -11.50 16 28 C -0.02 -1.08 9.52 22.25 0.21 -0.87 16 29 H 0.03 0.96 6.91 -2.39 -0.02 0.94 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.37 7.03 -2.39 -0.02 1.35 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.44 10.14 7.98 -213.32 -1.70 8.44 16 37 H 0.43 15.05 6.00 -213.31 -1.28 13.77 16 38 H 0.11 4.39 6.37 -2.91 -0.02 4.37 16 39 H 0.11 5.73 6.23 -2.91 -0.02 5.71 16 40 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 41 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.11 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -66.47 352.55 0.22 -66.26 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -1.91 Total: 44.28 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.83 Total: -18.47 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.94 Total: -73.22 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -1.80 Total: -55.67 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -66.47 0.22 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.839 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds