Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.67383 * 2 1 4 4 O 1.44381 * 110.61742 * 237.04244 * 2 1 3 5 5 C 1.43742 * 106.97240 * 201.43495 * 4 2 1 6 6 C 1.54108 * 107.29470 * 26.50945 * 5 4 2 7 7 C 1.54810 * 104.18512 * 357.97188 * 6 5 4 8 8 H 1.09001 * 110.90553 * 97.35686 * 7 6 5 9 9 C 1.50701 * 110.90521 * 220.92082 * 7 6 5 10 10 O 1.21280 * 119.99881 * 118.54584 * 9 7 6 11 11 N 1.34784 * 119.99802 * 298.54617 * 9 7 6 12 12 N 1.40101 * 119.99765 * 179.97438 * 11 9 7 13 13 C 1.34771 * 119.99957 * 179.97438 * 12 11 9 14 14 O 1.21585 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.47646 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.40010 * 119.89869 * 180.02562 * 15 13 12 17 17 C 1.36309 * 120.11066 * 180.27864 * 16 15 13 18 18 C 1.40897 * 119.88733 * 359.45609 * 17 16 15 19 19 C 1.41109 * 120.09907 * 180.27668 * 18 17 16 20 20 H 1.08000 * 119.99406 * 204.81044 * 19 18 17 21 21 C 1.40228 * 120.00383 * 24.80883 * 19 18 17 22 22 N 1.30643 * 119.99858 * 17.71555 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 197.71809 * 21 19 18 24 24 H 1.48501 * 109.47023 * 90.00383 * 23 21 19 25 25 H 1.48503 * 109.46657 * 209.99769 * 23 21 19 26 26 H 1.48494 * 109.47520 * 330.00035 * 23 21 19 27 27 C 1.40880 * 119.79572 * 0.56333 * 18 17 16 28 28 C 1.36319 * 119.89052 * 359.70997 * 27 18 17 29 29 H 1.08998 * 109.47082 * 297.03150 * 1 2 3 30 30 H 1.08995 * 109.47216 * 57.03328 * 1 2 3 31 31 H 1.09003 * 109.46716 * 177.03802 * 1 2 3 32 32 H 1.08995 * 109.87996 * 267.08318 * 5 4 2 33 33 H 1.09006 * 109.87988 * 145.92890 * 5 4 2 34 34 H 1.08997 * 110.48668 * 239.28966 * 6 5 4 35 35 H 1.09007 * 110.59755 * 116.70341 * 6 5 4 36 36 H 0.96995 * 120.00119 * 0.02562 * 11 9 7 37 37 H 0.97007 * 119.99634 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.94211 * 359.97438 * 16 15 13 39 39 H 1.07995 * 120.05563 * 179.72239 * 17 16 15 40 40 H 0.96996 * 120.00120 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.05803 * 179.69361 * 27 18 17 42 42 H 1.08002 * 119.95009 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 8 2.0384 -0.7352 -1.1339 5 6 3.3840 -1.1252 -0.8120 6 6 3.4796 -1.2166 0.7234 7 6 2.0759 -0.7893 1.2170 8 1 1.4553 -1.6606 1.4264 9 6 2.1797 0.0979 2.4308 10 8 1.7552 1.2333 2.3900 11 7 2.7443 -0.3704 3.5615 12 7 2.8412 0.4546 4.6897 13 6 3.4053 -0.0138 5.8205 14 8 3.8304 -1.1521 5.8615 15 6 3.5080 0.8558 7.0093 16 6 4.0949 0.3672 8.1828 17 6 4.1869 1.1644 9.2846 18 6 3.7005 2.4860 9.2376 19 6 3.7987 3.3170 10.3738 20 1 3.1117 4.1405 10.5013 21 6 4.7881 3.0736 11.3372 22 7 5.8180 2.3261 11.0414 23 14 4.6336 3.8182 13.0434 24 1 3.8937 2.8816 13.9270 25 1 5.9880 4.0603 13.6022 26 1 3.8964 5.1043 12.9574 27 6 3.1104 2.9731 8.0547 28 6 3.0178 2.1665 6.9597 29 1 -0.3633 0.4670 0.9154 30 1 -0.3633 0.5592 -0.8622 31 1 -0.3633 -1.0263 -0.0531 32 1 4.0853 -0.3781 -1.1832 33 1 3.6045 -2.0963 -1.2554 34 1 4.2408 -0.5331 1.0996 35 1 3.6986 -2.2383 1.0339 36 1 3.0841 -1.2783 3.5940 37 1 2.5024 1.3630 4.6568 38 1 4.4709 -0.6447 8.2166 39 1 4.6357 0.7852 10.1907 40 1 6.5026 2.1580 11.7077 41 1 2.7317 3.9837 8.0156 42 1 2.5652 2.5388 6.0525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843658626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = -76.544213 kcal Electronic energy + Delta-G solvation = -25513.849549 eV Core-core repulsion = 21652.351618 eV Total energy + Delta-G solvation = -3861.497932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78941 -39.45527 -38.40937 -37.20608 -35.06197 -34.01544 -33.05597 -31.88934 -31.14636 -30.01024 -29.31684 -26.85032 -25.84423 -23.01719 -22.31201 -21.99451 -21.04027 -20.96708 -19.83531 -17.98250 -17.79971 -17.35422 -16.72084 -16.21925 -15.61403 -15.48862 -15.30084 -15.15221 -14.35010 -14.16052 -14.09305 -14.07930 -13.70905 -13.34081 -12.85928 -12.76944 -12.62584 -12.32096 -12.29333 -12.00533 -11.68175 -11.54107 -11.43199 -11.32689 -11.16797 -11.10127 -10.98237 -10.71936 -10.24945 -10.16378 -9.95457 -9.63541 -9.43891 -9.32617 -8.19533 -7.80623 -7.66267 -7.11682 -4.70285 2.01858 2.02063 2.36623 2.85758 2.90896 2.94078 2.95592 3.43187 3.66769 3.70798 3.98686 4.19456 4.26909 4.44962 4.53540 4.73338 4.83148 4.89414 5.10004 5.23995 5.32100 5.41128 5.46537 5.56871 5.57558 5.70690 5.77663 5.89185 5.95087 6.17787 6.55427 6.71090 6.72920 6.83093 6.88295 6.97307 6.99629 7.33764 7.50269 7.63517 7.77360 7.93690 7.99981 8.01617 8.32741 8.53014 8.64612 8.84757 9.79867 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.002205 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.405794 B =12692.715192 C =13130.549164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.096 3.904 3 H 0.086 0.914 4 O -0.373 6.373 5 C 0.050 3.950 6 C -0.152 4.152 7 C -0.133 4.133 8 H 0.118 0.882 9 C 0.519 3.481 10 O -0.540 6.540 11 N -0.515 5.515 12 N -0.538 5.538 13 C 0.575 3.425 14 O -0.574 6.574 15 C -0.282 4.282 16 C -0.030 4.030 17 C -0.183 4.183 18 C 0.129 3.871 19 C -0.436 4.436 20 H 0.087 0.913 21 C 0.072 3.928 22 N -0.765 5.765 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.232 4.232 28 C -0.047 4.047 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.429 0.571 37 H 0.429 0.571 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.289 0.711 41 H 0.100 0.900 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -5.012 -14.470 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.038 3.962 3 H 0.104 0.896 4 O -0.292 6.292 5 C -0.027 4.027 6 C -0.190 4.190 7 C -0.156 4.156 8 H 0.136 0.864 9 C 0.305 3.695 10 O -0.416 6.416 11 N -0.260 5.260 12 N -0.289 5.289 13 C 0.371 3.629 14 O -0.454 6.454 15 C -0.288 4.288 16 C -0.050 4.050 17 C -0.202 4.202 18 C 0.126 3.874 19 C -0.463 4.463 20 H 0.105 0.895 21 C -0.150 4.150 22 N -0.387 5.387 23 Si 0.739 3.261 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.182 1.182 27 C -0.251 4.251 28 C -0.066 4.066 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.270 0.730 37 H 0.272 0.728 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.051 -5.134 -14.571 15.971 hybrid contribution 0.309 0.304 0.963 1.056 sum -3.742 -4.830 -13.607 14.916 Atomic orbital electron populations 1.21778 0.92364 1.02795 1.03277 1.22941 0.95790 0.95410 0.82036 0.89622 1.88905 1.27670 1.73863 1.38797 1.23114 0.84858 1.00891 0.93835 1.23028 0.95702 1.03736 0.96557 1.22891 0.99381 0.99793 0.93497 0.86414 1.20356 0.78093 0.88376 0.82710 1.90733 1.48635 1.18975 1.83304 1.44788 1.61321 1.14604 1.05299 1.45225 1.65398 1.14059 1.04171 1.18885 0.75643 0.87314 0.81091 1.90653 1.51141 1.19858 1.83779 1.18567 1.20584 0.95572 0.94041 1.20421 0.94729 0.98152 0.91675 1.21013 1.07079 0.93830 0.98280 1.17817 0.86911 0.91545 0.91161 1.19912 1.12154 1.11757 1.02509 0.89504 1.26151 0.93800 0.93950 1.01094 1.69739 1.05992 1.27358 1.35625 0.86166 0.78861 0.80494 0.80543 1.18819 1.19925 1.18213 1.20680 1.11583 0.99046 0.93813 1.20395 0.96520 0.92790 0.96911 0.90376 0.91510 0.91857 0.91934 0.89350 0.89788 0.89101 0.72981 0.72812 0.87983 0.85971 0.89978 0.88198 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.66 37.16 0.36 -0.97 16 2 C 0.10 0.98 3.02 -25.68 -0.08 0.90 16 3 H 0.09 0.98 7.53 -51.93 -0.39 0.59 16 4 O -0.37 -3.87 11.22 -35.23 -0.40 -4.26 16 5 C 0.05 0.39 7.70 37.74 0.29 0.68 16 6 C -0.15 -1.17 6.55 -25.20 -0.16 -1.34 16 7 C -0.13 -1.24 2.95 -89.77 -0.26 -1.51 16 8 H 0.12 0.91 8.06 -51.93 -0.42 0.49 16 9 C 0.52 6.68 7.17 -10.98 -0.08 6.61 16 10 O -0.54 -8.55 15.52 5.56 0.09 -8.46 16 11 N -0.51 -7.21 6.21 31.22 0.19 -7.02 16 12 N -0.54 -9.16 6.21 30.48 0.19 -8.98 16 13 C 0.57 11.70 7.88 -12.42 -0.10 11.60 16 14 O -0.57 -12.71 16.16 5.29 0.09 -12.62 16 15 C -0.28 -6.20 5.89 -104.73 -0.62 -6.82 16 16 C -0.03 -0.71 9.52 -39.61 -0.38 -1.08 16 17 C -0.18 -4.50 8.63 -39.27 -0.34 -4.84 16 18 C 0.13 3.18 5.57 -106.80 -0.60 2.59 16 19 C -0.44 -10.49 9.04 -37.75 -0.34 -10.83 16 20 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 21 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 22 N -0.76 -18.08 10.95 55.56 0.61 -17.47 16 23 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 26 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 27 C -0.23 -5.22 9.73 -39.27 -0.38 -5.61 16 28 C -0.05 -0.98 9.47 -39.61 -0.38 -1.36 16 29 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.43 5.42 8.00 -182.60 -1.46 3.96 16 37 H 0.43 7.09 6.00 -182.59 -1.10 5.99 16 38 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 39 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 40 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -28.80 355.72 -9.39 -38.18 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -7.33 Total: 13.86 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.15 Total: -10.42 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.99 Total: -33.46 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.22 Total: -25.35 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.80 -9.39 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.361 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds