Wall clock time and date at job start Tue Mar 31 2020 12:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.67383 * 2 1 4 4 O 1.44381 * 110.61742 * 237.04244 * 2 1 3 5 5 C 1.43742 * 106.97240 * 201.43495 * 4 2 1 6 6 C 1.54108 * 107.29470 * 26.50945 * 5 4 2 7 7 C 1.54810 * 104.18512 * 357.97188 * 6 5 4 8 8 H 1.09001 * 110.90553 * 97.35686 * 7 6 5 9 9 C 1.50701 * 110.90521 * 220.92082 * 7 6 5 10 10 O 1.21280 * 119.99881 * 118.54584 * 9 7 6 11 11 N 1.34784 * 119.99802 * 298.54617 * 9 7 6 12 12 N 1.40101 * 119.99765 * 179.97438 * 11 9 7 13 13 C 1.34771 * 119.99957 * 179.97438 * 12 11 9 14 14 O 1.21585 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.47646 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.40010 * 119.89869 * 180.02562 * 15 13 12 17 17 C 1.36309 * 120.11066 * 180.27864 * 16 15 13 18 18 C 1.40897 * 119.88733 * 359.45609 * 17 16 15 19 19 C 1.41109 * 120.09907 * 180.27668 * 18 17 16 20 20 H 1.08000 * 119.99406 * 204.81044 * 19 18 17 21 21 C 1.40228 * 120.00383 * 24.80883 * 19 18 17 22 22 N 1.30643 * 119.99858 * 17.71555 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 197.71809 * 21 19 18 24 24 H 1.48501 * 109.47023 * 90.00383 * 23 21 19 25 25 H 1.48503 * 109.46657 * 209.99769 * 23 21 19 26 26 H 1.48494 * 109.47520 * 330.00035 * 23 21 19 27 27 C 1.40880 * 119.79572 * 0.56333 * 18 17 16 28 28 C 1.36319 * 119.89052 * 359.70997 * 27 18 17 29 29 H 1.08998 * 109.47082 * 297.03150 * 1 2 3 30 30 H 1.08995 * 109.47216 * 57.03328 * 1 2 3 31 31 H 1.09003 * 109.46716 * 177.03802 * 1 2 3 32 32 H 1.08995 * 109.87996 * 267.08318 * 5 4 2 33 33 H 1.09006 * 109.87988 * 145.92890 * 5 4 2 34 34 H 1.08997 * 110.48668 * 239.28966 * 6 5 4 35 35 H 1.09007 * 110.59755 * 116.70341 * 6 5 4 36 36 H 0.96995 * 120.00119 * 0.02562 * 11 9 7 37 37 H 0.97007 * 119.99634 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.94211 * 359.97438 * 16 15 13 39 39 H 1.07995 * 120.05563 * 179.72239 * 17 16 15 40 40 H 0.96996 * 120.00120 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.05803 * 179.69361 * 27 18 17 42 42 H 1.08002 * 119.95009 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 8 2.0384 -0.7352 -1.1339 5 6 3.3840 -1.1252 -0.8120 6 6 3.4796 -1.2166 0.7234 7 6 2.0759 -0.7893 1.2170 8 1 1.4553 -1.6606 1.4264 9 6 2.1797 0.0979 2.4308 10 8 1.7552 1.2333 2.3900 11 7 2.7443 -0.3704 3.5615 12 7 2.8412 0.4546 4.6897 13 6 3.4053 -0.0138 5.8205 14 8 3.8304 -1.1521 5.8615 15 6 3.5080 0.8558 7.0093 16 6 4.0949 0.3672 8.1828 17 6 4.1869 1.1644 9.2846 18 6 3.7005 2.4860 9.2376 19 6 3.7987 3.3170 10.3738 20 1 3.1117 4.1405 10.5013 21 6 4.7881 3.0736 11.3372 22 7 5.8180 2.3261 11.0414 23 14 4.6336 3.8182 13.0434 24 1 3.8937 2.8816 13.9270 25 1 5.9880 4.0603 13.6022 26 1 3.8964 5.1043 12.9574 27 6 3.1104 2.9731 8.0547 28 6 3.0178 2.1665 6.9597 29 1 -0.3633 0.4670 0.9154 30 1 -0.3633 0.5592 -0.8622 31 1 -0.3633 -1.0263 -0.0531 32 1 4.0853 -0.3781 -1.1832 33 1 3.6045 -2.0963 -1.2554 34 1 4.2408 -0.5331 1.0996 35 1 3.6986 -2.2383 1.0339 36 1 3.0841 -1.2783 3.5940 37 1 2.5024 1.3630 4.6568 38 1 4.4709 -0.6447 8.2166 39 1 4.6357 0.7852 10.1907 40 1 6.5026 2.1580 11.7077 41 1 2.7317 3.9837 8.0156 42 1 2.5652 2.5388 6.0525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843658626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:13 Heat of formation + Delta-G solvation = -94.712323 kcal Electronic energy + Delta-G solvation = -25514.637378 eV Core-core repulsion = 21652.351618 eV Total energy + Delta-G solvation = -3862.285760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82951 -40.79365 -39.58997 -38.86850 -36.42624 -35.75033 -33.98034 -32.78571 -32.37097 -31.72891 -30.91820 -27.95447 -27.23963 -24.24278 -23.57678 -22.90682 -22.66798 -22.23011 -21.15171 -19.47097 -19.14393 -18.78089 -17.92162 -17.25799 -16.99701 -16.64624 -16.34563 -16.14223 -15.84929 -15.76441 -15.46719 -15.09331 -14.88443 -14.68715 -14.50431 -14.04513 -13.72301 -13.52529 -13.34612 -13.30045 -13.00189 -12.87020 -12.71229 -12.45706 -12.38718 -12.30444 -12.14783 -11.80755 -11.78263 -11.40346 -11.34182 -11.16013 -10.96067 -10.67752 -9.67952 -9.60107 -9.33691 -8.82530 -6.52043 0.32758 0.77297 1.12439 1.25563 1.38671 1.44045 1.53535 2.03534 2.15126 2.65886 2.72483 3.00751 3.40351 3.51762 3.63109 3.65158 3.96798 4.11577 4.14638 4.20793 4.25759 4.36458 4.38366 4.57151 4.69672 4.83260 4.90388 4.94706 4.97769 5.00163 5.04463 5.14751 5.20687 5.23766 5.52901 5.55557 5.62274 5.74075 5.85675 5.95909 5.99949 6.16517 6.50706 6.52656 6.73073 6.80050 6.84360 7.34832 8.12256 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.002205 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.405794 B =12692.715192 C =13130.549164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.067 0.933 4 O -0.386 6.386 5 C 0.045 3.955 6 C -0.148 4.148 7 C -0.125 4.125 8 H 0.143 0.857 9 C 0.525 3.475 10 O -0.569 6.569 11 N -0.512 5.512 12 N -0.530 5.530 13 C 0.579 3.421 14 O -0.593 6.593 15 C -0.289 4.289 16 C -0.040 4.040 17 C -0.202 4.202 18 C 0.102 3.898 19 C -0.465 4.465 20 H 0.093 0.907 21 C 0.034 3.966 22 N -0.797 5.797 23 Si 0.990 3.010 24 H -0.261 1.261 25 H -0.267 1.267 26 H -0.252 1.252 27 C -0.245 4.245 28 C -0.039 4.039 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.436 0.564 37 H 0.432 0.568 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.297 0.703 41 H 0.115 0.885 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -5.327 -15.460 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.085 0.915 4 O -0.305 6.305 5 C -0.032 4.032 6 C -0.186 4.186 7 C -0.147 4.147 8 H 0.160 0.840 9 C 0.312 3.688 10 O -0.446 6.446 11 N -0.259 5.259 12 N -0.279 5.279 13 C 0.374 3.626 14 O -0.476 6.476 15 C -0.295 4.295 16 C -0.059 4.059 17 C -0.222 4.222 18 C 0.099 3.901 19 C -0.492 4.492 20 H 0.111 0.889 21 C -0.186 4.186 22 N -0.421 5.421 23 Si 0.809 3.191 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.176 1.176 27 C -0.264 4.264 28 C -0.058 4.058 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.279 0.721 37 H 0.276 0.724 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.575 -5.448 -15.604 17.149 hybrid contribution 0.463 0.368 1.092 1.242 sum -4.113 -5.080 -14.512 15.916 Atomic orbital electron populations 1.21759 0.91748 1.03586 1.02940 1.22893 0.96351 0.94675 0.82501 0.91525 1.88898 1.28918 1.73803 1.38921 1.23307 0.83786 1.02101 0.93975 1.23069 0.94173 1.04979 0.96389 1.22939 1.01052 0.99581 0.91165 0.83968 1.21030 0.76595 0.88325 0.82852 1.90727 1.49661 1.20523 1.83720 1.44983 1.61912 1.14612 1.04376 1.44884 1.63922 1.14466 1.04581 1.18491 0.75875 0.86665 0.81577 1.90639 1.52134 1.20529 1.84280 1.18796 1.19939 0.96419 0.94382 1.20504 0.95117 0.98052 0.92258 1.20962 1.08395 0.94481 0.98318 1.18163 0.87724 0.91764 0.92439 1.20206 1.13094 1.12401 1.03462 0.88916 1.27025 0.92884 0.94062 1.04586 1.69781 1.06758 1.28323 1.37197 0.85073 0.79059 0.79664 0.75287 1.18536 1.19110 1.17580 1.20920 1.11748 1.00062 0.93673 1.20664 0.95396 0.92002 0.97690 0.91285 0.91238 0.90549 0.91771 0.87168 0.90571 0.86597 0.72053 0.72396 0.88174 0.87385 0.89159 0.86688 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.66 71.98 0.70 -1.71 16 2 C 0.09 1.77 3.02 31.28 0.09 1.86 16 3 H 0.07 1.50 7.53 -2.38 -0.02 1.48 16 4 O -0.39 -7.21 11.22 -148.98 -1.67 -8.88 16 5 C 0.04 0.58 7.70 72.36 0.56 1.14 16 6 C -0.15 -1.88 6.55 31.59 0.21 -1.67 16 7 C -0.12 -2.04 2.95 -10.24 -0.03 -2.07 16 8 H 0.14 1.70 8.06 -2.39 -0.02 1.68 16 9 C 0.52 12.57 7.17 87.66 0.63 13.20 16 10 O -0.57 -17.33 15.52 -3.03 -0.05 -17.38 16 11 N -0.51 -13.37 6.21 -173.52 -1.08 -14.44 16 12 N -0.53 -17.26 6.21 -175.74 -1.09 -18.35 16 13 C 0.58 23.08 7.88 86.73 0.68 23.76 16 14 O -0.59 -25.87 16.16 -3.98 -0.06 -25.93 16 15 C -0.29 -12.70 5.89 -19.93 -0.12 -12.82 16 16 C -0.04 -1.91 9.52 22.25 0.21 -1.70 16 17 C -0.20 -10.31 8.63 22.47 0.19 -10.12 16 18 C 0.10 5.16 5.57 -21.28 -0.12 5.05 16 19 C -0.46 -22.72 9.04 23.46 0.21 -22.51 16 20 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 21 C 0.03 1.55 5.14 85.35 0.44 1.99 16 22 N -0.80 -38.52 10.95 21.87 0.24 -38.28 16 23 Si 0.99 34.31 29.60 68.60 2.03 36.34 16 24 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 25 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 26 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 27 C -0.24 -11.01 9.73 22.47 0.22 -10.79 16 28 C -0.04 -1.58 9.47 22.25 0.21 -1.37 16 29 H 0.07 1.28 8.03 -2.39 -0.02 1.26 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.11 7.85 -2.39 -0.02 1.09 16 35 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.44 10.08 8.00 -213.33 -1.71 8.38 16 37 H 0.43 13.54 6.00 -213.31 -1.28 12.26 16 38 H 0.10 4.73 7.63 -2.91 -0.02 4.71 16 39 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 40 H 0.30 12.82 8.29 -92.71 -0.77 12.05 16 41 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 42 H 0.12 4.16 6.37 -2.91 -0.02 4.14 16 Total: -1.00 -62.76 355.72 0.49 -62.27 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -1.91 Total: 42.42 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.08 Total: -17.76 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -1.93 Total: -71.08 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.78 Total: -52.19 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Total: -62.76 0.49 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds