Wall clock time and date at job start Tue Mar 31 2020 12:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.87453 * 2 1 4 4 O 1.43747 * 109.88066 * 121.00907 * 2 1 3 5 5 C 1.44728 * 106.78855 * 92.94789 * 4 2 1 6 6 C 1.54996 * 103.51539 * 40.08404 * 5 4 2 7 7 C 1.54107 * 109.87877 * 238.99385 * 2 1 3 8 8 H 1.09002 * 110.48262 * 1.28197 * 7 2 1 9 9 C 1.50696 * 110.48879 * 123.92966 * 7 2 1 10 10 O 1.21281 * 119.99710 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00130 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00213 * 180.02562 * 11 9 7 13 13 C 1.34771 * 120.00160 * 179.97438 * 12 11 9 14 14 O 1.21581 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.47641 * 120.00145 * 179.97438 * 13 12 11 16 16 C 1.40019 * 119.89383 * 359.73240 * 15 13 12 17 17 C 1.36312 * 120.10404 * 179.75381 * 16 15 13 18 18 C 1.40887 * 119.89428 * 0.49487 * 17 16 15 19 19 C 1.41116 * 120.10655 * 179.73665 * 18 17 16 20 20 H 1.08001 * 120.00119 * 204.65650 * 19 18 17 21 21 C 1.40227 * 119.99708 * 24.65292 * 19 18 17 22 22 N 1.30646 * 120.00093 * 17.88689 * 21 19 18 23 23 Si 1.86795 * 120.00055 * 197.88021 * 21 19 18 24 24 H 1.48504 * 109.46983 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47372 * 120.00132 * 23 21 19 26 26 H 1.48500 * 109.47362 * 240.00699 * 23 21 19 27 27 C 1.40892 * 119.79358 * 359.75906 * 18 17 16 28 28 C 1.36318 * 119.89106 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.47544 * 180.70072 * 1 2 3 30 30 H 1.09003 * 109.47250 * 300.69898 * 1 2 3 31 31 H 1.08999 * 109.47317 * 60.69618 * 1 2 3 32 32 H 1.08993 * 110.63929 * 281.55635 * 5 4 2 33 33 H 1.09000 * 110.71097 * 158.64052 * 5 4 2 34 34 H 1.09005 * 110.90574 * 204.74525 * 6 5 4 35 35 H 1.08999 * 110.94065 * 81.15091 * 6 5 4 36 36 H 0.97000 * 119.99595 * 359.97438 * 11 9 7 37 37 H 0.97002 * 119.99787 * 359.97438 * 12 11 9 38 38 H 1.07996 * 119.94770 * 359.97438 * 16 15 13 39 39 H 1.08003 * 120.05890 * 180.27371 * 17 16 15 40 40 H 0.96998 * 119.99937 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.05647 * 179.97438 * 27 18 17 42 42 H 1.07996 * 119.94900 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 2.2280 -2.0725 0.7619 6 6 2.8324 -1.9516 -0.6602 7 6 2.0540 -0.7465 -1.2422 8 1 1.2236 -1.0906 -1.8589 9 6 2.9743 0.1398 -2.0410 10 8 3.2034 1.2704 -1.6665 11 7 3.5428 -0.3237 -3.1717 12 7 4.3989 0.5001 -3.9141 13 6 4.9677 0.0364 -5.0445 14 8 4.7376 -1.0968 -5.4201 15 6 5.8694 0.9048 -5.8272 16 6 6.1276 2.2117 -5.3961 17 6 6.9633 3.0155 -6.1127 18 6 7.5595 2.5328 -7.2944 19 6 8.4210 3.3630 -8.0428 20 1 8.5611 3.1839 -9.0986 21 6 9.0952 4.4205 -7.4155 22 7 9.2151 4.4387 -6.1147 23 14 9.8219 5.8032 -8.4398 24 1 9.5512 5.5490 -9.8776 25 1 9.2034 7.0928 -8.0406 26 1 11.2885 5.8672 -8.2156 27 6 7.2925 1.2188 -7.7271 28 6 6.4588 0.4209 -7.0014 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 -0.3634 0.5030 -0.8961 32 1 1.2813 -2.6118 0.7321 33 1 2.9283 -2.5657 1.4359 34 1 2.6430 -2.8542 -1.2413 35 1 3.9003 -1.7385 -0.6128 36 1 3.3598 -1.2281 -3.4710 37 1 4.5821 1.4043 -3.6146 38 1 5.6666 2.5823 -4.4925 39 1 7.1654 4.0220 -5.7771 40 1 9.6818 5.1700 -5.6808 41 1 7.7468 0.8447 -8.6325 42 1 6.2538 -0.5866 -7.3320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843658629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:18 Heat of formation + Delta-G solvation = -75.846946 kcal Electronic energy + Delta-G solvation = -25577.166226 eV Core-core repulsion = 21715.698530 eV Total energy + Delta-G solvation = -3861.467696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.82232 -39.45358 -38.37451 -37.19341 -35.04122 -33.98580 -33.04382 -31.67614 -31.18451 -29.71105 -29.51228 -27.13955 -25.87109 -22.98148 -22.28970 -21.87037 -21.05694 -20.82038 -19.81334 -18.04811 -17.63899 -17.47540 -16.66540 -16.41052 -15.73120 -15.51041 -15.22077 -14.85753 -14.41980 -14.14809 -14.08606 -13.84689 -13.65210 -13.32129 -13.07592 -12.88760 -12.43217 -12.27411 -12.20272 -12.06026 -11.78699 -11.53429 -11.36768 -11.32859 -11.19986 -11.12706 -10.96799 -10.72762 -10.22820 -10.14280 -9.89668 -9.66118 -9.44196 -9.29226 -8.17529 -7.81502 -7.63529 -7.12302 -4.69633 2.03009 2.04588 2.39908 2.85392 2.91408 2.95561 2.96929 3.54215 3.66997 3.71233 3.97887 4.10633 4.39102 4.45132 4.61875 4.74855 4.80635 4.93416 5.09287 5.20338 5.21708 5.35835 5.46889 5.47022 5.61142 5.73192 5.81401 5.92968 5.96502 6.20770 6.58282 6.68597 6.73205 6.81706 6.91081 6.96283 7.03893 7.34204 7.54793 7.66171 7.77026 7.96553 7.99110 8.03645 8.30729 8.53565 8.65083 8.86363 9.79240 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.002374 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.634912 B =11792.121528 C =12489.284487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.367 6.367 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.131 4.131 8 H 0.115 0.885 9 C 0.517 3.483 10 O -0.538 6.538 11 N -0.515 5.515 12 N -0.537 5.537 13 C 0.575 3.425 14 O -0.577 6.577 15 C -0.283 4.283 16 C -0.061 4.061 17 C -0.176 4.176 18 C 0.129 3.871 19 C -0.435 4.435 20 H 0.087 0.913 21 C 0.073 3.927 22 N -0.765 5.765 23 Si 0.915 3.085 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.271 1.271 27 C -0.238 4.238 28 C -0.015 4.015 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.428 0.572 37 H 0.430 0.570 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.288 0.712 41 H 0.101 0.899 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 -7.203 9.245 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.137 0.863 4 O -0.285 6.285 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.154 4.154 8 H 0.133 0.867 9 C 0.302 3.698 10 O -0.414 6.414 11 N -0.260 5.260 12 N -0.287 5.287 13 C 0.371 3.629 14 O -0.458 6.458 15 C -0.289 4.289 16 C -0.081 4.081 17 C -0.195 4.195 18 C 0.126 3.874 19 C -0.462 4.462 20 H 0.105 0.895 21 C -0.150 4.150 22 N -0.388 5.388 23 Si 0.738 3.262 24 H -0.180 1.180 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.258 4.258 28 C -0.035 4.035 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.270 0.730 37 H 0.273 0.727 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.338 -6.961 9.656 16.439 hybrid contribution 0.349 0.475 -0.561 0.813 sum -10.989 -6.486 9.096 15.670 Atomic orbital electron populations 1.22284 0.94966 1.02432 1.03010 1.22786 0.93923 0.98442 0.82520 0.86279 1.89038 1.86125 1.20521 1.32864 1.23599 0.99962 0.84831 0.94634 1.23214 1.01235 0.97076 0.97159 1.22690 0.98487 0.96236 0.97991 0.86659 1.20415 0.81248 0.88339 0.79769 1.90721 1.62406 1.19437 1.68868 1.44725 1.43959 1.15009 1.22304 1.45217 1.45371 1.14608 1.23536 1.18861 0.78998 0.87131 0.77864 1.90642 1.64669 1.20195 1.70282 1.18554 1.12266 0.95972 1.02083 1.20497 0.97199 0.92981 0.97407 1.20986 0.99842 1.00292 0.98406 1.17824 0.88405 0.90331 0.90870 1.19941 1.20217 1.08850 0.97233 0.89450 1.26152 0.94880 0.98768 0.95172 1.69742 1.29116 1.29582 1.10351 0.86136 0.78957 0.79939 0.81164 1.17980 1.19279 1.19573 1.20709 1.06933 0.94917 1.03235 1.20310 0.93195 0.97764 0.92215 0.92316 0.91365 0.91298 0.91769 0.88561 0.88908 0.89591 0.73026 0.72691 0.89186 0.86006 0.90039 0.88127 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.30 37.16 0.35 -1.00 16 2 C 0.08 0.85 3.69 -26.16 -0.10 0.75 16 3 H 0.12 1.51 6.44 -51.93 -0.33 1.18 16 4 O -0.37 -4.12 11.22 -35.23 -0.40 -4.51 16 5 C 0.05 0.36 7.67 38.21 0.29 0.65 16 6 C -0.15 -1.17 6.69 -24.72 -0.17 -1.34 16 7 C -0.13 -1.23 3.07 -90.24 -0.28 -1.51 16 8 H 0.12 0.80 7.70 -51.93 -0.40 0.40 16 9 C 0.52 6.98 7.13 -10.99 -0.08 6.90 16 10 O -0.54 -9.13 15.10 5.56 0.08 -9.04 16 11 N -0.51 -7.41 6.25 31.22 0.20 -7.21 16 12 N -0.54 -9.45 6.21 30.48 0.19 -9.26 16 13 C 0.58 11.81 7.88 -12.42 -0.10 11.71 16 14 O -0.58 -12.68 16.16 5.29 0.09 -12.59 16 15 C -0.28 -6.27 5.89 -104.73 -0.62 -6.89 16 16 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 17 C -0.18 -4.24 8.64 -39.27 -0.34 -4.58 16 18 C 0.13 3.20 5.58 -106.80 -0.60 2.60 16 19 C -0.44 -10.50 9.04 -37.74 -0.34 -10.85 16 20 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 21 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 22 N -0.77 -17.99 10.95 55.56 0.61 -17.38 16 23 Si 0.91 16.85 29.60 -169.99 -5.03 11.82 16 24 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 25 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 26 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 27 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 28 C -0.02 -0.35 9.52 -39.61 -0.38 -0.73 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.80 7.86 -51.93 -0.41 0.40 16 36 H 0.43 5.45 8.00 -182.60 -1.46 3.99 16 37 H 0.43 7.52 6.00 -182.60 -1.10 6.42 16 38 H 0.09 1.74 6.37 -52.49 -0.33 1.41 16 39 H 0.12 2.99 6.15 -52.48 -0.32 2.66 16 40 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.10 2.21 7.63 -52.49 -0.40 1.81 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -29.36 354.47 -9.38 -38.74 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -7.26 Total: 14.47 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.19 Total: -10.37 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.99 Total: -33.85 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.23 Total: -26.15 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.36 -9.38 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.106 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds