Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.87453 * 2 1 4 4 O 1.43747 * 109.88066 * 121.00907 * 2 1 3 5 5 C 1.44728 * 106.78855 * 92.94789 * 4 2 1 6 6 C 1.54996 * 103.51539 * 40.08404 * 5 4 2 7 7 C 1.54107 * 109.87877 * 238.99385 * 2 1 3 8 8 H 1.09002 * 110.48262 * 1.28197 * 7 2 1 9 9 C 1.50696 * 110.48879 * 123.92966 * 7 2 1 10 10 O 1.21281 * 119.99710 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00130 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00213 * 180.02562 * 11 9 7 13 13 C 1.34771 * 120.00160 * 179.97438 * 12 11 9 14 14 O 1.21581 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.47641 * 120.00145 * 179.97438 * 13 12 11 16 16 C 1.40019 * 119.89383 * 359.73240 * 15 13 12 17 17 C 1.36312 * 120.10404 * 179.75381 * 16 15 13 18 18 C 1.40887 * 119.89428 * 0.49487 * 17 16 15 19 19 C 1.41116 * 120.10655 * 179.73665 * 18 17 16 20 20 H 1.08001 * 120.00119 * 204.65650 * 19 18 17 21 21 C 1.40227 * 119.99708 * 24.65292 * 19 18 17 22 22 N 1.30646 * 120.00093 * 17.88689 * 21 19 18 23 23 Si 1.86795 * 120.00055 * 197.88021 * 21 19 18 24 24 H 1.48504 * 109.46983 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47372 * 120.00132 * 23 21 19 26 26 H 1.48500 * 109.47362 * 240.00699 * 23 21 19 27 27 C 1.40892 * 119.79358 * 359.75906 * 18 17 16 28 28 C 1.36318 * 119.89106 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.47544 * 180.70072 * 1 2 3 30 30 H 1.09003 * 109.47250 * 300.69898 * 1 2 3 31 31 H 1.08999 * 109.47317 * 60.69618 * 1 2 3 32 32 H 1.08993 * 110.63929 * 281.55635 * 5 4 2 33 33 H 1.09000 * 110.71097 * 158.64052 * 5 4 2 34 34 H 1.09005 * 110.90574 * 204.74525 * 6 5 4 35 35 H 1.08999 * 110.94065 * 81.15091 * 6 5 4 36 36 H 0.97000 * 119.99595 * 359.97438 * 11 9 7 37 37 H 0.97002 * 119.99787 * 359.97438 * 12 11 9 38 38 H 1.07996 * 119.94770 * 359.97438 * 16 15 13 39 39 H 1.08003 * 120.05890 * 180.27371 * 17 16 15 40 40 H 0.96998 * 119.99937 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.05647 * 179.97438 * 27 18 17 42 42 H 1.07996 * 119.94900 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 2.2280 -2.0725 0.7619 6 6 2.8324 -1.9516 -0.6602 7 6 2.0540 -0.7465 -1.2422 8 1 1.2236 -1.0906 -1.8589 9 6 2.9743 0.1398 -2.0410 10 8 3.2034 1.2704 -1.6665 11 7 3.5428 -0.3237 -3.1717 12 7 4.3989 0.5001 -3.9141 13 6 4.9677 0.0364 -5.0445 14 8 4.7376 -1.0968 -5.4201 15 6 5.8694 0.9048 -5.8272 16 6 6.1276 2.2117 -5.3961 17 6 6.9633 3.0155 -6.1127 18 6 7.5595 2.5328 -7.2944 19 6 8.4210 3.3630 -8.0428 20 1 8.5611 3.1839 -9.0986 21 6 9.0952 4.4205 -7.4155 22 7 9.2151 4.4387 -6.1147 23 14 9.8219 5.8032 -8.4398 24 1 9.5512 5.5490 -9.8776 25 1 9.2034 7.0928 -8.0406 26 1 11.2885 5.8672 -8.2156 27 6 7.2925 1.2188 -7.7271 28 6 6.4588 0.4209 -7.0014 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 -0.3634 0.5030 -0.8961 32 1 1.2813 -2.6118 0.7321 33 1 2.9283 -2.5657 1.4359 34 1 2.6430 -2.8542 -1.2413 35 1 3.9003 -1.7385 -0.6128 36 1 3.3598 -1.2281 -3.4710 37 1 4.5821 1.4043 -3.6146 38 1 5.6666 2.5823 -4.4925 39 1 7.1654 4.0220 -5.7771 40 1 9.6818 5.1700 -5.6808 41 1 7.7468 0.8447 -8.6325 42 1 6.2538 -0.5866 -7.3320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843658629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = -94.754619 kcal Electronic energy + Delta-G solvation = -25577.986124 eV Core-core repulsion = 21715.698530 eV Total energy + Delta-G solvation = -3862.287594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87173 -40.81835 -39.58900 -38.86996 -36.44156 -35.73202 -33.99782 -32.81039 -32.16361 -31.38697 -31.15149 -28.09409 -27.39913 -24.24530 -23.49002 -22.90537 -22.62746 -22.16386 -21.06198 -19.42036 -19.19031 -18.84518 -17.87988 -17.27917 -17.19158 -16.73304 -16.48131 -16.02218 -15.78441 -15.61827 -15.46578 -15.10403 -14.96096 -14.55098 -14.30076 -13.96657 -13.76433 -13.74925 -13.31194 -13.17718 -12.89127 -12.87538 -12.72857 -12.49140 -12.44268 -12.37130 -11.98503 -11.87659 -11.80118 -11.42815 -11.37132 -11.15667 -10.92559 -10.63554 -9.70482 -9.58997 -9.34476 -8.83495 -6.52310 0.32025 0.77279 1.12185 1.25191 1.38582 1.42471 1.55370 2.02667 2.15253 2.71635 2.82124 2.92897 3.36862 3.53130 3.64317 3.72482 4.03104 4.10689 4.19040 4.24011 4.26618 4.41635 4.42322 4.57956 4.65981 4.81721 4.89871 4.90389 4.98754 5.00290 5.09860 5.13672 5.23569 5.27432 5.50258 5.55769 5.61433 5.81229 5.90717 5.94117 5.96089 6.17713 6.48321 6.50620 6.72831 6.80145 6.83664 7.33909 8.11340 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.002374 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.634912 B =11792.121528 C =12489.284487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.086 0.914 4 O -0.395 6.395 5 C 0.042 3.958 6 C -0.146 4.146 7 C -0.122 4.122 8 H 0.151 0.849 9 C 0.518 3.482 10 O -0.575 6.575 11 N -0.509 5.509 12 N -0.533 5.533 13 C 0.580 3.420 14 O -0.591 6.591 15 C -0.290 4.290 16 C -0.056 4.056 17 C -0.198 4.198 18 C 0.103 3.897 19 C -0.464 4.464 20 H 0.090 0.910 21 C 0.036 3.964 22 N -0.795 5.795 23 Si 0.989 3.011 24 H -0.254 1.254 25 H -0.262 1.262 26 H -0.264 1.264 27 C -0.250 4.250 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.438 0.562 37 H 0.430 0.570 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.298 0.702 41 H 0.111 0.889 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 -8.206 9.514 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.104 0.896 4 O -0.315 6.315 5 C -0.033 4.033 6 C -0.183 4.183 7 C -0.144 4.144 8 H 0.169 0.831 9 C 0.306 3.694 10 O -0.453 6.453 11 N -0.257 5.257 12 N -0.281 5.281 13 C 0.375 3.625 14 O -0.473 6.473 15 C -0.296 4.296 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.099 3.901 19 C -0.491 4.491 20 H 0.108 0.892 21 C -0.184 4.184 22 N -0.418 5.418 23 Si 0.808 3.192 24 H -0.177 1.177 25 H -0.187 1.187 26 H -0.188 1.188 27 C -0.269 4.269 28 C -0.041 4.041 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.281 0.719 37 H 0.273 0.727 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.525 -7.989 9.948 17.879 hybrid contribution 0.659 0.718 -0.510 1.100 sum -11.866 -7.271 9.438 16.815 Atomic orbital electron populations 1.22234 0.92844 1.03803 1.03194 1.22750 0.95506 0.96969 0.82826 0.89583 1.89009 1.86487 1.22463 1.33496 1.23845 1.01559 0.83435 0.94508 1.23267 0.99829 0.97484 0.97761 1.22802 0.98565 0.95727 0.97341 0.83131 1.21286 0.80746 0.88310 0.79059 1.90716 1.63618 1.21410 1.69605 1.44927 1.43442 1.15032 1.22263 1.44948 1.45204 1.14961 1.23018 1.18473 0.78986 0.86577 0.78475 1.90627 1.65237 1.20569 1.70896 1.18805 1.12327 0.96275 1.02224 1.20682 0.96359 0.92778 0.97737 1.20994 1.01190 1.00333 0.99185 1.18164 0.89178 0.91172 0.91558 1.20210 1.21107 1.10236 0.97547 0.89150 1.26992 0.94748 1.00499 0.96164 1.69769 1.29622 1.30613 1.11832 0.85044 0.78249 0.76542 0.79343 1.17718 1.18670 1.18820 1.20882 1.07421 0.94739 1.03889 1.20483 0.93063 0.98138 0.92427 0.90256 0.91732 0.90667 0.89166 0.87679 0.85646 0.91516 0.71871 0.72654 0.86973 0.87010 0.89102 0.87116 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.30 71.98 0.67 -1.55 16 2 C 0.08 1.52 3.69 30.97 0.11 1.64 16 3 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 4 O -0.39 -8.38 11.22 -148.98 -1.67 -10.05 16 5 C 0.04 0.54 7.67 72.66 0.56 1.10 16 6 C -0.15 -1.89 6.69 31.90 0.21 -1.67 16 7 C -0.12 -2.00 3.07 -10.55 -0.03 -2.03 16 8 H 0.15 1.45 7.70 -2.39 -0.02 1.43 16 9 C 0.52 13.41 7.13 87.66 0.63 14.03 16 10 O -0.58 -19.57 15.10 -3.03 -0.05 -19.62 16 11 N -0.51 -13.90 6.25 -173.53 -1.08 -14.98 16 12 N -0.53 -18.34 6.21 -175.75 -1.09 -19.43 16 13 C 0.58 23.38 7.88 86.73 0.68 24.06 16 14 O -0.59 -25.26 16.16 -3.97 -0.06 -25.33 16 15 C -0.29 -12.88 5.89 -19.93 -0.12 -13.00 16 16 C -0.06 -2.51 9.47 22.25 0.21 -2.30 16 17 C -0.20 -9.77 8.64 22.47 0.19 -9.58 16 18 C 0.10 5.21 5.58 -21.27 -0.12 5.09 16 19 C -0.46 -22.84 9.04 23.46 0.21 -22.63 16 20 H 0.09 4.22 7.91 -2.91 -0.02 4.20 16 21 C 0.04 1.62 5.13 85.35 0.44 2.06 16 22 N -0.80 -37.89 10.95 21.87 0.24 -37.65 16 23 Si 0.99 34.26 29.60 68.60 2.03 36.29 16 24 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 25 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 26 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 27 C -0.25 -11.86 9.73 22.47 0.22 -11.64 16 28 C -0.02 -0.99 9.52 22.25 0.21 -0.78 16 29 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 36 H 0.44 10.16 8.00 -213.32 -1.71 8.46 16 37 H 0.43 14.87 6.00 -213.32 -1.28 13.59 16 38 H 0.11 4.35 6.37 -2.91 -0.02 4.33 16 39 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 40 H 0.30 12.61 8.29 -92.71 -0.77 11.84 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.11 4.82 7.63 -2.91 -0.02 4.79 16 Total: -1.00 -64.85 354.47 0.48 -64.36 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -1.91 Total: 43.59 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.08 Total: -17.19 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.94 Total: -72.06 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.78 Total: -55.00 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -64.85 0.48 -64.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.390 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds