Wall clock time and date at job start Tue Mar 31 2020 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41848 * 2 1 4 4 O 1.44782 * 110.48986 * 122.45668 * 2 1 3 5 5 C 1.44426 * 105.29912 * 159.33098 * 4 2 1 6 6 C 1.54483 * 104.79873 * 319.45014 * 5 4 2 7 7 C 1.54478 * 110.37461 * 237.69211 * 2 1 3 8 8 H 1.09005 * 110.51336 * 98.40775 * 7 2 1 9 9 C 1.50702 * 110.51063 * 335.83038 * 7 2 1 10 10 O 1.21279 * 120.00257 * 280.83248 * 9 7 2 11 11 N 1.34777 * 119.99730 * 100.82792 * 9 7 2 12 12 N 1.40095 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.34776 * 120.00399 * 180.02562 * 12 11 9 14 14 O 1.21586 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.47639 * 120.00591 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89967 * 179.97438 * 15 13 12 17 17 C 1.36318 * 120.10868 * 180.02562 * 16 15 13 18 18 C 1.40884 * 119.89093 * 359.97438 * 17 16 15 19 19 C 1.41110 * 120.10432 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00125 * 333.60818 * 19 18 17 21 21 C 1.40220 * 120.00047 * 153.60732 * 19 18 17 22 22 N 1.30653 * 120.00189 * 161.99905 * 21 19 18 23 23 Si 1.86806 * 120.00183 * 341.71839 * 21 19 18 24 24 H 1.48490 * 109.47170 * 95.24632 * 23 21 19 25 25 H 1.48502 * 109.47104 * 215.24900 * 23 21 19 26 26 H 1.48501 * 109.46879 * 335.24732 * 23 21 19 27 27 C 1.40888 * 119.79621 * 0.25719 * 18 17 16 28 28 C 1.36324 * 119.89041 * 359.52362 * 27 18 17 29 29 H 1.09005 * 109.47012 * 188.53421 * 1 2 3 30 30 H 1.08992 * 109.47187 * 308.53179 * 1 2 3 31 31 H 1.09002 * 109.47269 * 68.54152 * 1 2 3 32 32 H 1.08999 * 110.37145 * 200.62320 * 5 4 2 33 33 H 1.08996 * 110.46989 * 78.32904 * 5 4 2 34 34 H 1.08998 * 110.50981 * 265.33521 * 6 5 4 35 35 H 1.08996 * 110.50906 * 142.62557 * 6 5 4 36 36 H 0.97002 * 120.00428 * 0.02562 * 11 9 7 37 37 H 0.97000 * 120.00343 * 0.02562 * 12 11 9 38 38 H 1.08000 * 119.94390 * 0.02562 * 16 15 13 39 39 H 1.07999 * 120.05084 * 179.97438 * 17 16 15 40 40 H 0.96993 * 120.00079 * 180.02562 * 22 21 19 41 41 H 1.07995 * 120.06027 * 179.74477 * 27 18 17 42 42 H 1.07997 * 119.94985 * 180.23318 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7278 1.1444 5 6 3.3911 -1.0895 0.7967 6 6 3.3194 -1.5055 -0.6893 7 6 2.0678 -0.7740 -1.2239 8 1 2.3407 -0.0840 -2.0225 9 6 1.0445 -1.7666 -1.7124 10 8 0.9051 -2.8259 -1.1386 11 7 0.2841 -1.4770 -2.7868 12 7 -0.6669 -2.4000 -3.2412 13 6 -1.4270 -2.1107 -4.3160 14 8 -1.2876 -1.0485 -4.8909 15 6 -2.4295 -3.0831 -4.7945 16 6 -3.2183 -2.7801 -5.9109 17 6 -4.1457 -3.6746 -6.3561 18 6 -4.3093 -4.9058 -5.6913 19 6 -5.2683 -5.8348 -6.1479 20 1 -6.1381 -5.4916 -6.6883 21 6 -5.0918 -7.2037 -5.9002 22 7 -6.1067 -8.0209 -5.9954 23 14 -3.4040 -7.8600 -5.4418 24 1 -3.2907 -7.9450 -3.9636 25 1 -3.2215 -9.2110 -6.0308 26 1 -2.3581 -6.9458 -5.9666 27 6 -3.5167 -5.2043 -4.5654 28 6 -2.5888 -4.3053 -4.1302 29 1 -0.3633 -1.0163 0.1525 30 1 -0.3633 0.6401 0.8038 31 1 -0.3634 0.3759 -0.9564 32 1 3.7297 -1.9254 1.4088 33 1 4.0572 -0.2356 0.9200 34 1 3.1979 -2.5850 -0.7782 35 1 4.2113 -1.1754 -1.2218 36 1 0.3957 -0.6299 -3.2460 37 1 -0.7783 -3.2473 -2.7824 38 1 -3.0918 -1.8361 -6.4202 39 1 -4.7539 -3.4397 -7.2171 40 1 -5.9848 -8.9677 -5.8237 41 1 -3.6414 -6.1451 -4.0500 42 1 -1.9781 -4.5347 -3.2695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843658632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:22 Heat of formation + Delta-G solvation = -69.800739 kcal Electronic energy + Delta-G solvation = -26002.737470 eV Core-core repulsion = 22141.531957 eV Total energy + Delta-G solvation = -3861.205513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93382 -39.51276 -38.35044 -37.38839 -35.07360 -33.98171 -33.06161 -31.86426 -31.51340 -30.34203 -29.74570 -26.78951 -25.84823 -23.10879 -22.43793 -22.02404 -21.55595 -20.83159 -19.75093 -18.11056 -17.70851 -17.39964 -16.93830 -16.21853 -15.87613 -15.73669 -15.49568 -15.18101 -14.51332 -14.27923 -14.11470 -13.91659 -13.68833 -13.21703 -12.98244 -12.71667 -12.68442 -12.56915 -12.38883 -12.30891 -11.98886 -11.62941 -11.42179 -11.30405 -11.15506 -11.05300 -10.93541 -10.50667 -10.35403 -10.28853 -9.99288 -9.81224 -9.49317 -9.31862 -8.25681 -8.03317 -7.83213 -7.32891 -4.82973 1.84315 1.99061 2.34287 2.61107 2.89912 3.03943 3.12273 3.49532 3.53647 3.73876 3.93764 4.11940 4.32769 4.35843 4.59581 4.71560 4.79023 4.91622 4.99219 5.07003 5.22105 5.23918 5.42769 5.49184 5.57078 5.62210 5.70801 5.73291 5.92148 5.93167 6.34358 6.48841 6.51752 6.62196 6.81899 6.84090 6.87255 7.15904 7.27887 7.43532 7.58506 7.82821 7.86714 7.99822 8.00600 8.34955 8.44355 8.75541 9.65841 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002794 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.121328 B =10019.640698 C =10741.478255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.090 3.910 3 H 0.084 0.916 4 O -0.363 6.363 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.133 4.133 8 H 0.107 0.893 9 C 0.521 3.479 10 O -0.534 6.534 11 N -0.518 5.518 12 N -0.537 5.537 13 C 0.576 3.424 14 O -0.573 6.573 15 C -0.285 4.285 16 C -0.010 4.010 17 C -0.223 4.223 18 C 0.106 3.894 19 C -0.412 4.412 20 H 0.098 0.902 21 C 0.079 3.921 22 N -0.778 5.778 23 Si 0.920 3.080 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.239 1.239 27 C -0.250 4.250 28 C -0.032 4.032 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.428 0.572 37 H 0.428 0.572 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.293 0.707 41 H 0.105 0.895 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.513 10.640 8.898 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.102 0.898 4 O -0.282 6.282 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.156 4.156 8 H 0.125 0.875 9 C 0.307 3.693 10 O -0.410 6.410 11 N -0.264 5.264 12 N -0.287 5.287 13 C 0.372 3.628 14 O -0.453 6.453 15 C -0.291 4.291 16 C -0.030 4.030 17 C -0.242 4.242 18 C 0.102 3.898 19 C -0.438 4.438 20 H 0.116 0.884 21 C -0.144 4.144 22 N -0.399 5.399 23 Si 0.745 3.255 24 H -0.192 1.192 25 H -0.215 1.215 26 H -0.162 1.162 27 C -0.269 4.269 28 C -0.052 4.052 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.269 0.731 37 H 0.272 0.728 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.201 10.317 9.074 20.490 hybrid contribution 0.662 -0.453 -0.014 0.802 sum 15.863 9.864 9.060 20.761 Atomic orbital electron populations 1.21985 0.92660 1.04168 1.03021 1.22935 0.95847 0.94804 0.83246 0.89809 1.89263 1.27029 1.74345 1.37558 1.23380 0.84684 1.00009 0.94791 1.22966 0.95763 1.02847 0.96331 1.22714 0.95226 0.97440 1.00239 0.87521 1.20370 0.81610 0.88383 0.78983 1.90737 1.68804 1.25099 1.56311 1.44890 1.33540 1.17540 1.30469 1.45154 1.34141 1.17015 1.32388 1.18748 0.79600 0.87163 0.77324 1.90659 1.70681 1.26050 1.57953 1.18541 1.07359 0.97041 1.06173 1.20380 0.92611 0.97217 0.92773 1.20681 1.03772 0.96812 1.02933 1.17862 0.89719 0.92735 0.89485 1.19858 1.05559 0.90459 1.27945 0.88384 1.26455 0.99638 0.97225 0.91118 1.69593 1.32540 1.06398 1.31376 0.86187 0.82178 0.77723 0.79379 1.19151 1.21505 1.16199 1.20668 1.04101 1.00876 1.01213 1.20428 0.95507 0.92903 0.96322 0.90871 0.91108 0.90767 0.88709 0.92063 0.88885 0.89634 0.73081 0.72830 0.87379 0.87449 0.89563 0.87774 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.55 37.16 0.32 -1.33 16 2 C 0.09 0.82 3.85 -25.96 -0.10 0.72 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 O -0.36 -4.12 11.36 -35.23 -0.40 -4.52 16 5 C 0.05 0.39 7.63 37.94 0.29 0.68 16 6 C -0.14 -1.15 6.59 -25.16 -0.17 -1.32 16 7 C -0.13 -1.19 3.42 -90.20 -0.31 -1.50 16 8 H 0.11 0.63 8.11 -51.93 -0.42 0.21 16 9 C 0.52 6.73 4.89 -10.98 -0.05 6.68 16 10 O -0.53 -8.82 15.59 5.56 0.09 -8.73 16 11 N -0.52 -7.01 6.06 31.22 0.19 -6.82 16 12 N -0.54 -8.85 6.21 30.48 0.19 -8.66 16 13 C 0.58 11.10 7.88 -12.42 -0.10 11.00 16 14 O -0.57 -11.91 16.16 5.29 0.09 -11.82 16 15 C -0.29 -5.93 5.89 -104.73 -0.62 -6.55 16 16 C -0.01 -0.22 9.52 -39.61 -0.38 -0.60 16 17 C -0.22 -4.92 9.73 -39.27 -0.38 -5.31 16 18 C 0.11 2.50 5.19 -106.80 -0.55 1.95 16 19 C -0.41 -10.21 9.58 -37.75 -0.36 -10.57 16 20 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 21 C 0.08 1.90 5.42 -17.31 -0.09 1.81 16 22 N -0.78 -18.86 13.92 55.56 0.77 -18.09 16 23 Si 0.92 19.22 24.43 -169.99 -4.15 15.07 16 24 H -0.27 -5.39 6.67 56.52 0.38 -5.01 16 25 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.24 -5.16 6.77 56.52 0.38 -4.77 16 27 C -0.25 -5.61 7.07 -39.27 -0.28 -5.89 16 28 C -0.03 -0.67 9.47 -39.60 -0.38 -1.04 16 29 H 0.07 0.95 7.18 -51.93 -0.37 0.58 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.96 7.07 -51.93 -0.37 0.59 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.43 5.08 7.97 -182.60 -1.46 3.62 16 37 H 0.43 7.00 6.00 -182.60 -1.10 5.90 16 38 H 0.11 2.17 7.63 -52.49 -0.40 1.77 16 39 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 41 H 0.10 2.30 4.28 -52.49 -0.22 2.08 16 42 H 0.09 1.68 6.37 -52.49 -0.33 1.34 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -29.48 346.54 -8.38 -37.86 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.22 Total: 11.74 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.16 Total: -11.25 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 1.15 Total: -33.57 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.23 Total: -25.07 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.15 Total: 15.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.48 -8.38 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds