Wall clock time and date at job start Tue Mar 31 2020 12:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41848 * 2 1 4 4 O 1.44782 * 110.48986 * 122.45668 * 2 1 3 5 5 C 1.44426 * 105.29912 * 159.33098 * 4 2 1 6 6 C 1.54483 * 104.79873 * 319.45014 * 5 4 2 7 7 C 1.54478 * 110.37461 * 237.69211 * 2 1 3 8 8 H 1.09005 * 110.51336 * 98.40775 * 7 2 1 9 9 C 1.50702 * 110.51063 * 335.83038 * 7 2 1 10 10 O 1.21279 * 120.00257 * 280.83248 * 9 7 2 11 11 N 1.34777 * 119.99730 * 100.82792 * 9 7 2 12 12 N 1.40095 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.34776 * 120.00399 * 180.02562 * 12 11 9 14 14 O 1.21586 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.47639 * 120.00591 * 180.02562 * 13 12 11 16 16 C 1.40014 * 119.89967 * 179.97438 * 15 13 12 17 17 C 1.36318 * 120.10868 * 180.02562 * 16 15 13 18 18 C 1.40884 * 119.89093 * 359.97438 * 17 16 15 19 19 C 1.41110 * 120.10432 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00125 * 333.60818 * 19 18 17 21 21 C 1.40220 * 120.00047 * 153.60732 * 19 18 17 22 22 N 1.30653 * 120.00189 * 161.99905 * 21 19 18 23 23 Si 1.86806 * 120.00183 * 341.71839 * 21 19 18 24 24 H 1.48490 * 109.47170 * 95.24632 * 23 21 19 25 25 H 1.48502 * 109.47104 * 215.24900 * 23 21 19 26 26 H 1.48501 * 109.46879 * 335.24732 * 23 21 19 27 27 C 1.40888 * 119.79621 * 0.25719 * 18 17 16 28 28 C 1.36324 * 119.89041 * 359.52362 * 27 18 17 29 29 H 1.09005 * 109.47012 * 188.53421 * 1 2 3 30 30 H 1.08992 * 109.47187 * 308.53179 * 1 2 3 31 31 H 1.09002 * 109.47269 * 68.54152 * 1 2 3 32 32 H 1.08999 * 110.37145 * 200.62320 * 5 4 2 33 33 H 1.08996 * 110.46989 * 78.32904 * 5 4 2 34 34 H 1.08998 * 110.50981 * 265.33521 * 6 5 4 35 35 H 1.08996 * 110.50906 * 142.62557 * 6 5 4 36 36 H 0.97002 * 120.00428 * 0.02562 * 11 9 7 37 37 H 0.97000 * 120.00343 * 0.02562 * 12 11 9 38 38 H 1.08000 * 119.94390 * 0.02562 * 16 15 13 39 39 H 1.07999 * 120.05084 * 179.97438 * 17 16 15 40 40 H 0.96993 * 120.00079 * 180.02562 * 22 21 19 41 41 H 1.07995 * 120.06027 * 179.74477 * 27 18 17 42 42 H 1.07997 * 119.94985 * 180.23318 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7278 1.1444 5 6 3.3911 -1.0895 0.7967 6 6 3.3194 -1.5055 -0.6893 7 6 2.0678 -0.7740 -1.2239 8 1 2.3407 -0.0840 -2.0225 9 6 1.0445 -1.7666 -1.7124 10 8 0.9051 -2.8259 -1.1386 11 7 0.2841 -1.4770 -2.7868 12 7 -0.6669 -2.4000 -3.2412 13 6 -1.4270 -2.1107 -4.3160 14 8 -1.2876 -1.0485 -4.8909 15 6 -2.4295 -3.0831 -4.7945 16 6 -3.2183 -2.7801 -5.9109 17 6 -4.1457 -3.6746 -6.3561 18 6 -4.3093 -4.9058 -5.6913 19 6 -5.2683 -5.8348 -6.1479 20 1 -6.1381 -5.4916 -6.6883 21 6 -5.0918 -7.2037 -5.9002 22 7 -6.1067 -8.0209 -5.9954 23 14 -3.4040 -7.8600 -5.4418 24 1 -3.2907 -7.9450 -3.9636 25 1 -3.2215 -9.2110 -6.0308 26 1 -2.3581 -6.9458 -5.9666 27 6 -3.5167 -5.2043 -4.5654 28 6 -2.5888 -4.3053 -4.1302 29 1 -0.3633 -1.0163 0.1525 30 1 -0.3633 0.6401 0.8038 31 1 -0.3634 0.3759 -0.9564 32 1 3.7297 -1.9254 1.4088 33 1 4.0572 -0.2356 0.9200 34 1 3.1979 -2.5850 -0.7782 35 1 4.2113 -1.1754 -1.2218 36 1 0.3957 -0.6299 -3.2460 37 1 -0.7783 -3.2473 -2.7824 38 1 -3.0918 -1.8361 -6.4202 39 1 -4.7539 -3.4397 -7.2171 40 1 -5.9848 -8.9677 -5.8237 41 1 -3.6414 -6.1451 -4.0500 42 1 -1.9781 -4.5347 -3.2695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843658632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:21 Heat of formation + Delta-G solvation = -90.482617 kcal Electronic energy + Delta-G solvation = -26003.634304 eV Core-core repulsion = 22141.531957 eV Total energy + Delta-G solvation = -3862.102346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91914 -40.87064 -39.53162 -38.92696 -36.39473 -35.74595 -33.99006 -32.99975 -32.50919 -31.98075 -31.26459 -27.89032 -27.19644 -24.32003 -23.42375 -23.22825 -23.05029 -22.18842 -20.95834 -19.50916 -19.24808 -18.68094 -17.98904 -17.41082 -17.12134 -16.59052 -16.44935 -16.36047 -16.00522 -15.76310 -15.56571 -15.40686 -14.98062 -14.68670 -14.39511 -14.06303 -13.98593 -13.71170 -13.47755 -13.30127 -13.01197 -12.84163 -12.71679 -12.49188 -12.28236 -12.24943 -12.03304 -12.01935 -11.96773 -11.57882 -11.34425 -11.11049 -10.94465 -10.69652 -9.80805 -9.71319 -9.38394 -9.10343 -6.67772 0.16352 0.79633 0.86540 1.21006 1.29332 1.38046 1.46398 1.88904 2.05347 2.61203 2.87389 2.92318 3.37842 3.44246 3.54968 3.73779 4.01972 4.08608 4.09890 4.18903 4.22619 4.29579 4.31660 4.45035 4.58536 4.62117 4.79781 4.84895 4.89197 4.90370 4.91707 5.09066 5.11714 5.13816 5.36904 5.50729 5.58747 5.59972 5.76618 5.84204 5.90661 6.05457 6.20461 6.49226 6.55152 6.63656 6.83906 7.34093 7.94572 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002794 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.121328 B =10019.640698 C =10741.478255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.121 0.879 4 O -0.398 6.398 5 C 0.044 3.956 6 C -0.139 4.139 7 C -0.129 4.129 8 H 0.148 0.852 9 C 0.522 3.478 10 O -0.573 6.573 11 N -0.513 5.513 12 N -0.532 5.532 13 C 0.581 3.419 14 O -0.585 6.585 15 C -0.280 4.280 16 C -0.014 4.014 17 C -0.231 4.231 18 C 0.095 3.905 19 C -0.450 4.450 20 H 0.071 0.929 21 C 0.051 3.949 22 N -0.814 5.814 23 Si 0.966 3.034 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.250 1.250 27 C -0.263 4.263 28 C -0.029 4.029 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.437 0.563 37 H 0.430 0.570 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.303 0.697 41 H 0.108 0.892 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.775 12.619 9.962 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.139 0.861 4 O -0.317 6.317 5 C -0.033 4.033 6 C -0.177 4.177 7 C -0.152 4.152 8 H 0.165 0.835 9 C 0.310 3.690 10 O -0.450 6.450 11 N -0.261 5.261 12 N -0.280 5.280 13 C 0.375 3.625 14 O -0.467 6.467 15 C -0.286 4.286 16 C -0.033 4.033 17 C -0.251 4.251 18 C 0.092 3.908 19 C -0.477 4.477 20 H 0.089 0.911 21 C -0.169 4.169 22 N -0.437 5.437 23 Si 0.789 3.211 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.173 1.173 27 C -0.282 4.282 28 C -0.048 4.048 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.281 0.719 37 H 0.273 0.727 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.470 12.303 10.148 24.403 hybrid contribution -0.233 -0.856 -0.250 0.922 sum 18.237 11.447 9.898 23.698 Atomic orbital electron populations 1.21988 0.94061 1.02070 1.03772 1.23148 0.94861 0.96327 0.82584 0.86134 1.89233 1.28790 1.74987 1.38738 1.23587 0.83842 1.01239 0.94601 1.23008 0.96689 1.01158 0.96885 1.22905 0.93919 0.97009 1.01332 0.83461 1.21260 0.81389 0.88533 0.77823 1.90725 1.69871 1.27119 1.57286 1.45111 1.32825 1.17289 1.30865 1.44897 1.34122 1.17594 1.31338 1.18367 0.79683 0.86522 0.77926 1.90657 1.71087 1.26384 1.58581 1.18873 1.06942 0.97345 1.05463 1.20568 0.92201 0.97496 0.93030 1.20852 1.04231 0.96685 1.03295 1.18028 0.89802 0.93025 0.89968 1.19805 1.05975 0.91681 1.30231 0.91073 1.27022 1.02132 0.96929 0.90849 1.69600 1.33851 1.07162 1.33108 0.85489 0.78391 0.77476 0.79784 1.17859 1.20079 1.17329 1.20801 1.04654 1.01660 1.01066 1.20699 0.95045 0.92185 0.96883 0.94430 0.90291 0.90006 0.88982 0.89051 0.91623 0.86225 0.71923 0.72663 0.86087 0.86770 0.88576 0.87471 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.55 71.98 0.62 -2.39 16 2 C 0.09 1.33 3.85 31.10 0.12 1.45 16 3 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 4 O -0.40 -8.18 11.36 -148.98 -1.69 -9.88 16 5 C 0.04 0.58 7.63 72.49 0.55 1.13 16 6 C -0.14 -1.83 6.59 31.61 0.21 -1.62 16 7 C -0.13 -1.84 3.42 -10.52 -0.04 -1.88 16 8 H 0.15 0.93 8.11 -2.38 -0.02 0.91 16 9 C 0.52 12.35 4.89 87.66 0.43 12.78 16 10 O -0.57 -18.35 15.59 -3.02 -0.05 -18.40 16 11 N -0.51 -12.54 6.06 -173.53 -1.05 -13.59 16 12 N -0.53 -16.34 6.21 -175.74 -1.09 -17.44 16 13 C 0.58 21.08 7.88 86.73 0.68 21.76 16 14 O -0.59 -22.87 16.16 -3.99 -0.06 -22.93 16 15 C -0.28 -11.18 5.89 -19.93 -0.12 -11.29 16 16 C -0.01 -0.57 9.52 22.25 0.21 -0.36 16 17 C -0.23 -10.29 9.73 22.47 0.22 -10.07 16 18 C 0.10 4.58 5.19 -21.28 -0.11 4.46 16 19 C -0.45 -23.25 9.58 23.46 0.22 -23.03 16 20 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 21 C 0.05 2.49 5.42 85.35 0.46 2.96 16 22 N -0.81 -40.70 13.92 21.87 0.30 -40.40 16 23 Si 0.97 39.38 24.43 68.60 1.68 41.05 16 24 H -0.25 -9.74 6.67 99.48 0.66 -9.08 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.25 -10.51 6.77 99.48 0.67 -9.84 16 27 C -0.26 -11.67 7.07 22.47 0.16 -11.51 16 28 C -0.03 -1.15 9.47 22.25 0.21 -0.94 16 29 H 0.04 0.96 7.18 -2.38 -0.02 0.94 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.35 7.84 -2.39 -0.02 1.33 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 1.25 7.07 -2.39 -0.02 1.23 16 35 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.44 8.94 7.97 -213.32 -1.70 7.24 16 37 H 0.43 13.16 6.00 -213.32 -1.28 11.88 16 38 H 0.12 4.67 7.63 -2.91 -0.02 4.65 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 40 H 0.30 13.44 8.29 -92.71 -0.77 12.67 16 41 H 0.11 4.65 4.28 -2.91 -0.01 4.64 16 42 H 0.13 4.11 6.37 -2.91 -0.02 4.09 16 Total: -1.00 -65.62 346.54 -0.11 -65.73 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -1.98 Total: 34.39 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.83 Total: -18.54 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.84 Total: -71.42 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.80 Total: -51.21 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.68 Total: 41.05 kcal Total: -65.62 -0.11 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843658632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.755 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds