Wall clock time and date at job start Tue Mar 31 2020 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47090 * 2 1 4 4 C 1.36250 * 126.39920 * 90.02931 * 3 2 1 5 5 O 1.35205 * 125.00731 * 359.95994 * 4 3 2 6 6 N 1.30923 * 109.97861 * 180.22939 * 4 3 2 7 7 C 1.35542 * 109.71535 * 359.56320 * 6 4 3 8 8 C 1.40031 * 133.26095 * 180.12471 * 7 6 4 9 9 C 1.36184 * 120.09827 * 180.33236 * 8 7 6 10 10 C 1.40214 * 120.48180 * 359.97438 * 9 8 7 11 11 C 1.47369 * 119.95358 * 180.02562 * 10 9 8 12 12 O 1.21516 * 120.00307 * 179.97438 * 11 10 9 13 13 O 1.34766 * 119.99735 * 0.02562 * 11 10 9 14 14 C 1.45204 * 116.99852 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47425 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47232 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46888 * 59.99679 * 21 19 17 23 23 H 1.48497 * 109.47376 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46900 * 299.99725 * 21 19 17 25 25 C 1.39602 * 120.09617 * 359.97438 * 10 9 8 26 26 C 1.38195 * 119.58309 * 0.04007 * 25 10 9 27 27 H 1.09000 * 109.46772 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46900 * 299.99678 * 1 2 3 29 29 H 1.08992 * 109.47034 * 59.99366 * 1 2 3 30 30 H 1.09002 * 109.46900 * 240.00322 * 2 1 3 31 31 H 1.09000 * 109.47001 * 119.99989 * 2 1 3 32 32 H 0.96701 * 113.99595 * 90.00891 * 5 4 3 33 33 H 1.07999 * 119.95293 * 0.30726 * 8 7 6 34 34 H 1.07999 * 119.75967 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.46902 * 299.99324 * 14 13 11 36 36 H 1.08997 * 109.47449 * 59.99849 * 14 13 11 37 37 H 1.08996 * 109.47111 * 299.99996 * 15 14 13 38 38 H 1.09002 * 109.46921 * 59.99422 * 15 14 13 39 39 H 1.09004 * 109.47110 * 299.99973 * 16 15 14 40 40 H 1.09002 * 109.46783 * 59.99735 * 16 15 14 41 41 H 0.97005 * 120.00511 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.20957 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2884 2.1433 1.0967 5 8 2.1446 1.7369 2.3782 6 7 2.7022 3.3290 0.7266 7 6 2.7334 3.4006 -0.6266 8 6 3.0916 4.4124 -1.5260 9 6 3.0135 4.1925 -2.8677 10 6 2.5758 2.9552 -3.3614 11 6 2.4963 2.7297 -4.8156 12 8 2.1176 1.6576 -5.2444 13 8 2.8447 3.7121 -5.6698 14 6 2.7409 3.4197 -7.0883 15 6 3.1748 4.6454 -7.8948 16 6 3.0660 4.3372 -9.3894 17 6 3.4940 5.5442 -10.1837 18 1 3.8114 6.4416 -9.6735 19 6 3.4794 5.5032 -11.5618 20 7 3.0924 4.4106 -12.1831 21 14 4.0092 6.9997 -12.5464 22 1 5.4158 7.3393 -12.2124 23 1 3.9038 6.7004 -13.9971 24 1 3.1298 8.1487 -12.2123 25 6 2.2163 1.9363 -2.4774 26 6 2.2940 2.1560 -1.1152 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.9356 1.3239 2.7508 33 1 3.4298 5.3686 -1.1552 34 1 3.2915 4.9765 -3.5565 35 1 3.3861 2.5761 -7.3335 36 1 1.7084 3.1709 -7.3334 37 1 2.5294 5.4888 -7.6495 38 1 4.2072 4.8947 -7.6497 39 1 3.7118 3.4938 -9.6344 40 1 2.0337 4.0876 -9.6347 41 1 3.0824 4.3816 -13.1526 42 1 1.8794 0.9826 -2.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847646151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:32 Heat of formation + Delta-G solvation = -61.160644 kcal Electronic energy + Delta-G solvation = -25055.278849 eV Core-core repulsion = 21194.447999 eV Total energy + Delta-G solvation = -3860.830850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67558 -40.25136 -38.55992 -37.00283 -36.34567 -35.44942 -33.97479 -31.73314 -31.72325 -30.02550 -29.70006 -27.07384 -24.64003 -24.39961 -23.09523 -22.94234 -21.10982 -20.96783 -20.33088 -19.05016 -18.31531 -17.52906 -16.94732 -16.67931 -16.26732 -16.19724 -15.85011 -15.03663 -14.83633 -14.58430 -14.45649 -14.20173 -14.07860 -13.77181 -13.46732 -13.14137 -12.81831 -12.42056 -12.23175 -12.19470 -11.95257 -11.91193 -11.68760 -11.64298 -10.94615 -10.89860 -10.70963 -10.62922 -10.45527 -10.37933 -10.37891 -9.71120 -9.50688 -9.16939 -8.77765 -8.51611 -8.37623 -6.02575 -4.05603 0.13575 1.05847 1.67335 1.89499 2.67521 2.82174 3.14166 3.33499 3.37746 3.40387 3.57299 3.95443 4.02396 4.38142 4.43907 4.51229 4.59484 4.69779 4.80280 4.89081 4.91566 5.08255 5.21896 5.33154 5.33329 5.52660 5.58946 5.63114 5.72155 5.81831 5.97515 6.05252 6.06043 6.09998 6.38326 6.48314 6.55258 6.82922 6.97287 6.99201 7.29815 7.60968 7.72164 7.88968 7.95701 8.36776 9.00450 9.58587 11.08779 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.001987 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.389047 B =14085.860953 C =14816.206598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.487 5.487 4 C 0.460 3.540 5 O -0.441 6.441 6 N -0.491 5.491 7 C 0.090 3.910 8 C -0.078 4.078 9 C -0.069 4.069 10 C -0.103 4.103 11 C 0.508 3.492 12 O -0.511 6.511 13 O -0.350 6.350 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.034 4.034 26 C 0.037 3.963 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.410 0.590 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -9.384 29.822 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.189 5.189 4 C 0.158 3.842 5 O -0.242 6.242 6 N -0.221 5.221 7 C -0.030 4.030 8 C -0.097 4.097 9 C -0.089 4.089 10 C -0.106 4.106 11 C 0.352 3.648 12 O -0.401 6.401 13 O -0.266 6.266 14 C -0.004 4.004 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.055 4.055 26 C -0.070 4.070 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.269 0.731 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.456 -9.077 30.083 31.519 hybrid contribution 0.348 -0.428 -0.961 1.108 sum -2.108 -9.505 29.123 30.707 Atomic orbital electron populations 1.22183 0.93738 1.03513 1.03545 1.21866 0.96144 0.78938 1.04794 1.45835 1.54882 1.13264 1.04958 1.20416 0.96636 0.85927 0.81270 1.84798 1.41364 1.79645 1.18435 1.70665 1.23210 1.16632 1.11615 1.19026 1.01392 0.93375 0.89234 1.19982 1.00716 0.98085 0.90929 1.21005 0.96499 0.96285 0.95147 1.18827 1.06690 0.95484 0.89617 1.20838 0.74304 0.82232 0.87390 1.90832 1.43601 1.26203 1.79503 1.86548 1.77944 1.41908 1.20220 1.23549 1.02114 1.00953 0.73745 1.21773 1.01135 0.94618 0.97151 1.19048 0.97660 0.97514 0.87084 1.21135 1.44560 0.99125 0.91169 0.92444 1.25031 0.95329 0.96150 0.97983 1.69952 1.47543 1.27091 1.08794 0.86603 0.79217 0.83021 0.78838 1.20178 1.21299 1.20172 1.19915 0.97987 0.99529 0.88070 1.18335 1.06892 0.93256 0.88546 0.90166 0.91588 0.91560 0.88585 0.88708 0.73123 0.84113 0.83111 0.91379 0.91385 0.92039 0.92045 0.96232 0.96231 0.92849 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.10 0.51 6.81 -4.04 -0.03 0.49 16 3 N -0.49 -4.09 2.83 -116.00 -0.33 -4.42 16 4 C 0.46 4.20 8.98 -88.91 -0.80 3.40 16 5 O -0.44 -2.61 13.51 -17.31 -0.23 -2.84 16 6 N -0.49 -5.77 11.29 -12.18 -0.14 -5.91 16 7 C 0.09 1.05 7.22 -84.61 -0.61 0.43 16 8 C -0.08 -0.81 10.03 -39.65 -0.40 -1.21 16 9 C -0.07 -0.75 9.53 -39.58 -0.38 -1.13 16 10 C -0.10 -1.30 5.88 -104.93 -0.62 -1.91 16 11 C 0.51 7.88 7.88 34.45 0.27 8.15 16 12 O -0.51 -9.06 16.12 -19.28 -0.31 -9.37 16 13 O -0.35 -5.75 9.44 -40.67 -0.38 -6.14 16 14 C 0.07 1.26 5.48 37.16 0.20 1.46 16 15 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 16 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.03 -0.38 9.58 -39.09 -0.37 -0.76 16 26 C 0.04 0.39 6.87 -83.89 -0.58 -0.18 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.24 8.12 -51.93 -0.42 -0.18 16 32 H 0.41 0.18 9.06 45.56 0.41 0.59 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.50 7.58 -52.49 -0.40 1.10 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -34.87 368.82 -8.74 -43.61 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -5.00 Total: -3.90 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.62 Total: -7.07 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.27 Total: -36.36 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.93 Total: -18.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.87 -8.74 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.547 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds