Wall clock time and date at job start Tue Mar 31 2020 13:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47090 * 2 1 4 4 C 1.36250 * 126.39920 * 90.02931 * 3 2 1 5 5 O 1.35205 * 125.00731 * 359.95994 * 4 3 2 6 6 N 1.30923 * 109.97861 * 180.22939 * 4 3 2 7 7 C 1.35542 * 109.71535 * 359.56320 * 6 4 3 8 8 C 1.40031 * 133.26095 * 180.12471 * 7 6 4 9 9 C 1.36184 * 120.09827 * 180.33236 * 8 7 6 10 10 C 1.40214 * 120.48180 * 359.97438 * 9 8 7 11 11 C 1.47369 * 119.95358 * 180.02562 * 10 9 8 12 12 O 1.21516 * 120.00307 * 179.97438 * 11 10 9 13 13 O 1.34766 * 119.99735 * 0.02562 * 11 10 9 14 14 C 1.45204 * 116.99852 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47425 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47232 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46888 * 59.99679 * 21 19 17 23 23 H 1.48497 * 109.47376 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46900 * 299.99725 * 21 19 17 25 25 C 1.39602 * 120.09617 * 359.97438 * 10 9 8 26 26 C 1.38195 * 119.58309 * 0.04007 * 25 10 9 27 27 H 1.09000 * 109.46772 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46900 * 299.99678 * 1 2 3 29 29 H 1.08992 * 109.47034 * 59.99366 * 1 2 3 30 30 H 1.09002 * 109.46900 * 240.00322 * 2 1 3 31 31 H 1.09000 * 109.47001 * 119.99989 * 2 1 3 32 32 H 0.96701 * 113.99595 * 90.00891 * 5 4 3 33 33 H 1.07999 * 119.95293 * 0.30726 * 8 7 6 34 34 H 1.07999 * 119.75967 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.46902 * 299.99324 * 14 13 11 36 36 H 1.08997 * 109.47449 * 59.99849 * 14 13 11 37 37 H 1.08996 * 109.47111 * 299.99996 * 15 14 13 38 38 H 1.09002 * 109.46921 * 59.99422 * 15 14 13 39 39 H 1.09004 * 109.47110 * 299.99973 * 16 15 14 40 40 H 1.09002 * 109.46783 * 59.99735 * 16 15 14 41 41 H 0.97005 * 120.00511 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.20957 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2884 2.1433 1.0967 5 8 2.1446 1.7369 2.3782 6 7 2.7022 3.3290 0.7266 7 6 2.7334 3.4006 -0.6266 8 6 3.0916 4.4124 -1.5260 9 6 3.0135 4.1925 -2.8677 10 6 2.5758 2.9552 -3.3614 11 6 2.4963 2.7297 -4.8156 12 8 2.1176 1.6576 -5.2444 13 8 2.8447 3.7121 -5.6698 14 6 2.7409 3.4197 -7.0883 15 6 3.1748 4.6454 -7.8948 16 6 3.0660 4.3372 -9.3894 17 6 3.4940 5.5442 -10.1837 18 1 3.8114 6.4416 -9.6735 19 6 3.4794 5.5032 -11.5618 20 7 3.0924 4.4106 -12.1831 21 14 4.0092 6.9997 -12.5464 22 1 5.4158 7.3393 -12.2124 23 1 3.9038 6.7004 -13.9971 24 1 3.1298 8.1487 -12.2123 25 6 2.2163 1.9363 -2.4774 26 6 2.2940 2.1560 -1.1152 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.9356 1.3239 2.7508 33 1 3.4298 5.3686 -1.1552 34 1 3.2915 4.9765 -3.5565 35 1 3.3861 2.5761 -7.3335 36 1 1.7084 3.1709 -7.3334 37 1 2.5294 5.4888 -7.6495 38 1 4.2072 4.8947 -7.6497 39 1 3.7118 3.4938 -9.6344 40 1 2.0337 4.0876 -9.6347 41 1 3.0824 4.3816 -13.1526 42 1 1.8794 0.9826 -2.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847646151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:31 Heat of formation + Delta-G solvation = -84.258511 kcal Electronic energy + Delta-G solvation = -25056.280448 eV Core-core repulsion = 21194.447999 eV Total energy + Delta-G solvation = -3861.832449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41191 -41.49437 -39.26654 -37.95032 -37.43103 -36.10800 -35.90630 -33.66494 -32.41928 -30.88445 -30.49042 -28.87775 -25.86929 -25.01827 -24.52871 -23.80085 -22.16521 -22.07749 -21.73025 -19.68843 -19.29271 -18.60517 -18.28581 -17.81898 -17.65705 -17.37089 -16.74207 -16.48265 -15.74459 -15.61558 -15.53079 -15.22685 -14.94600 -14.75372 -14.31537 -14.09849 -14.01387 -13.81899 -13.74189 -13.31005 -13.06321 -12.79422 -12.54294 -12.51756 -12.49853 -12.35135 -12.30057 -12.05114 -11.86016 -11.61518 -11.44186 -11.38139 -11.23232 -11.14494 -10.54474 -9.56449 -9.33396 -8.19554 -6.30805 -0.72924 0.23285 0.98422 1.08366 1.43121 1.46455 1.53847 1.61132 1.68690 2.43251 2.53950 2.68567 3.14275 3.20862 3.54398 3.58820 3.80560 3.98663 4.03410 4.04078 4.05949 4.10234 4.21671 4.26926 4.42436 4.47517 4.68711 4.75896 4.83694 4.84097 5.01068 5.07564 5.10777 5.13012 5.21686 5.26752 5.39753 5.52911 5.55973 5.61865 5.67207 5.82766 6.21582 6.49127 6.56459 6.62935 6.85090 7.38464 8.92338 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.001987 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.389047 B =14085.860953 C =14816.206598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.482 5.482 4 C 0.475 3.525 5 O -0.438 6.438 6 N -0.527 5.527 7 C 0.079 3.921 8 C -0.079 4.079 9 C -0.065 4.065 10 C -0.123 4.123 11 C 0.510 3.490 12 O -0.539 6.539 13 O -0.347 6.347 14 C 0.079 3.921 15 C -0.094 4.094 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.025 4.025 26 C 0.027 3.973 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.436 0.564 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.264 0.736 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 -9.049 31.822 33.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.184 5.184 4 C 0.172 3.828 5 O -0.244 6.244 6 N -0.259 5.259 7 C -0.041 4.041 8 C -0.098 4.098 9 C -0.086 4.086 10 C -0.126 4.126 11 C 0.357 3.643 12 O -0.431 6.431 13 O -0.263 6.263 14 C 0.005 3.995 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.046 4.046 26 C -0.081 4.081 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.299 0.701 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.073 0.927 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.008 -8.771 32.133 33.369 hybrid contribution 0.170 -0.647 -1.367 1.522 sum -1.838 -9.418 30.766 32.227 Atomic orbital electron populations 1.22160 0.93838 1.04492 1.02126 1.22222 0.96018 0.77322 1.06787 1.46043 1.54139 1.14169 1.04006 1.20516 0.94524 0.85444 0.82308 1.84774 1.43121 1.79755 1.16732 1.70649 1.25299 1.18288 1.11624 1.19342 1.01146 0.93969 0.89651 1.20153 1.00437 0.98717 0.90511 1.21050 0.96153 0.95785 0.95562 1.18691 1.09288 0.96913 0.87711 1.21325 0.73240 0.81472 0.88266 1.90815 1.45102 1.27136 1.80040 1.86524 1.78254 1.42326 1.19194 1.23191 1.01712 0.99647 0.74923 1.21462 1.01883 0.95661 0.94129 1.18935 0.95553 0.96179 0.90508 1.21604 1.44428 1.00053 0.91953 0.91585 1.26012 0.95271 0.99381 0.99347 1.70092 1.48710 1.29402 1.09163 0.85449 0.79263 0.79068 0.76960 1.19038 1.21040 1.19063 1.19910 0.97098 0.99309 0.88258 1.18333 1.07286 0.93640 0.88799 0.88021 0.92358 0.93532 0.87785 0.85597 0.70079 0.82362 0.82300 0.91683 0.91765 0.91300 0.91249 0.98457 0.98497 0.92731 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 71.98 0.74 -0.67 16 2 C 0.10 0.72 6.81 86.38 0.59 1.31 16 3 N -0.48 -7.23 2.83 -631.93 -1.79 -9.02 16 4 C 0.47 7.73 8.98 179.75 1.61 9.34 16 5 O -0.44 -3.97 13.51 -84.85 -1.15 -5.11 16 6 N -0.53 -11.70 11.29 -306.23 -3.46 -15.16 16 7 C 0.08 1.77 7.22 39.62 0.29 2.06 16 8 C -0.08 -1.57 10.03 22.23 0.22 -1.34 16 9 C -0.06 -1.37 9.53 22.27 0.21 -1.16 16 10 C -0.12 -3.06 5.88 -20.06 -0.12 -3.18 16 11 C 0.51 15.90 7.88 70.23 0.55 16.45 16 12 O -0.54 -19.39 16.12 19.78 0.32 -19.07 16 13 O -0.35 -11.34 9.44 -56.77 -0.54 -11.88 16 14 C 0.08 2.90 5.48 71.98 0.39 3.29 16 15 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 16 C 0.03 1.33 4.97 29.85 0.15 1.48 16 17 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 21 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 C -0.03 -0.55 9.58 22.59 0.22 -0.34 16 26 C 0.03 0.56 6.87 38.68 0.27 0.82 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.13 0.18 8.12 -2.39 -0.02 0.16 16 32 H 0.44 -1.06 9.06 -74.06 -0.67 -1.73 16 33 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.16 3.01 7.58 -2.91 -0.02 2.99 16 35 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 42 H 0.14 2.92 7.64 -2.91 -0.02 2.90 16 Total: -1.00 -75.57 368.82 2.06 -73.50 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.38 Total: 2.87 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.99 Total: -5.60 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -4.96 Total: -80.70 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.36 Total: -36.06 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -75.57 2.06 -73.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.757 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds