Wall clock time and date at job start Tue Mar 31 2020 13:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21315 * 120.00406 * 2 1 4 4 C 1.46653 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.40059 * 120.24384 * 354.58324 * 4 2 1 6 6 C 1.37621 * 119.89854 * 180.26300 * 5 4 2 7 7 N 1.48025 * 119.80035 * 179.74582 * 6 5 4 8 8 O 1.21804 * 119.99699 * 180.02562 * 7 6 5 9 9 O 1.21800 * 120.00060 * 0.02562 * 7 6 5 10 10 C 1.38699 * 120.39439 * 359.75950 * 6 5 4 11 11 C 1.37930 * 120.49699 * 359.96633 * 10 6 5 12 12 C 1.38967 * 120.08494 * 0.02562 * 11 10 6 13 13 N 1.38698 * 120.19677 * 180.02562 * 12 11 10 14 14 C 1.46845 * 110.99658 * 59.55185 * 13 12 11 15 15 C 1.53035 * 109.52421 * 174.15940 * 14 13 12 16 16 C 1.53115 * 109.27834 * 59.17727 * 15 14 13 17 17 C 1.53116 * 109.16224 * 302.34748 * 16 15 14 18 18 H 1.08996 * 109.50185 * 297.67208 * 17 16 15 19 19 C 1.50701 * 109.50458 * 177.59170 * 17 16 15 20 20 H 1.07992 * 120.00379 * 240.00012 * 19 17 16 21 21 C 1.37881 * 119.99512 * 60.00251 * 19 17 16 22 22 N 1.31514 * 120.00366 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99719 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47452 * 59.99549 * 23 21 19 25 25 H 1.48499 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 299.99508 * 23 21 19 27 27 C 1.46838 * 111.00235 * 295.34442 * 13 12 11 28 28 H 1.09000 * 109.47209 * 270.00219 * 1 2 3 29 29 H 1.09007 * 109.47091 * 29.99756 * 1 2 3 30 30 H 1.08996 * 109.47835 * 149.99690 * 1 2 3 31 31 H 1.08006 * 120.05126 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.75070 * 179.97438 * 10 6 5 33 33 H 1.07993 * 119.96263 * 179.97438 * 11 10 6 34 34 H 1.09004 * 109.46572 * 294.17908 * 14 13 12 35 35 H 1.09010 * 109.46409 * 54.14340 * 14 13 12 36 36 H 1.09004 * 109.49984 * 299.23684 * 15 14 13 37 37 H 1.09005 * 109.50426 * 179.12462 * 15 14 13 38 38 H 1.09003 * 109.52279 * 182.44094 * 16 15 14 39 39 H 1.08999 * 109.51917 * 62.25586 * 16 15 14 40 40 H 0.97003 * 120.00033 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.46901 * 65.82059 * 27 13 12 42 42 H 1.09003 * 109.45633 * 305.84381 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2701 -0.0006 5 6 1.5497 -2.4833 0.1131 6 6 2.2453 -3.6708 0.1172 7 7 1.5138 -4.9515 0.2432 8 8 2.1259 -6.0045 0.2477 9 8 0.2998 -4.9522 0.3422 10 6 3.6277 -3.6747 0.0044 11 6 4.3236 -2.4897 -0.1141 12 6 3.6416 -1.2789 -0.1207 13 7 4.3391 -0.0861 -0.2403 14 6 5.1044 -0.0473 -1.4929 15 6 5.7418 1.3339 -1.6603 16 6 6.6623 1.6135 -0.4692 17 6 5.8510 1.5194 0.8260 18 1 5.0718 2.2815 0.8234 19 6 6.7618 1.7350 2.0071 20 1 6.8706 0.9621 2.7533 21 6 7.4562 2.9194 2.1349 22 7 7.3241 3.8606 1.2259 23 14 8.5858 3.1864 3.5985 24 1 9.6460 2.1467 3.6019 25 1 9.2110 4.5300 3.5026 26 1 7.7987 3.0948 4.8545 27 6 5.2105 0.1328 0.9212 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.4733 -2.4868 0.2021 32 1 4.1631 -4.6125 0.0092 33 1 5.4000 -2.5028 -0.2010 34 1 5.8857 -0.8069 -1.4650 35 1 4.4372 -0.2435 -2.3324 36 1 4.9603 2.0926 -1.7023 37 1 6.3225 1.3574 -2.5825 38 1 7.0850 2.6140 -0.5624 39 1 7.4664 0.8779 -0.4497 40 1 7.8129 4.6936 1.3157 41 1 5.9912 -0.6275 0.9380 42 1 4.6202 0.0675 1.8353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853760837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:15 Heat of formation + Delta-G solvation = -1.944807 kcal Electronic energy + Delta-G solvation = -27010.639411 eV Core-core repulsion = 23152.376352 eV Total energy + Delta-G solvation = -3858.263059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33858 -40.72974 -38.58952 -37.77673 -36.71397 -34.22338 -32.49133 -32.28654 -30.33560 -30.00494 -29.43271 -26.26443 -25.10132 -24.31051 -23.69771 -21.83118 -21.40071 -20.63833 -19.00774 -18.78591 -18.49193 -17.68007 -17.32121 -16.20482 -15.91982 -15.78633 -15.15243 -14.82392 -14.60251 -14.48966 -14.29557 -13.92039 -13.34776 -13.13263 -12.79997 -12.57240 -12.44786 -12.35027 -12.28845 -12.11555 -11.87344 -11.71298 -11.35518 -11.29454 -11.01526 -10.88801 -10.80771 -10.29140 -10.04574 -9.78391 -9.67781 -9.60740 -9.44252 -9.22506 -8.83280 -8.39926 -8.08628 -6.05147 -4.12379 -0.35067 0.28299 1.11195 1.22160 2.24460 3.17523 3.26941 3.32345 3.34106 3.77227 3.79236 4.11179 4.32640 4.38866 4.58193 4.77441 4.94350 5.07921 5.09053 5.24892 5.28160 5.35577 5.38981 5.43813 5.49006 5.69745 5.77173 5.87859 5.94427 6.03319 6.14496 6.23800 6.28254 6.51841 6.56147 6.77315 6.99373 7.22551 7.30890 7.48781 7.54580 7.64790 7.67093 7.98085 8.06821 8.35108 8.90764 9.52328 11.00729 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.003554 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.184560 B = 7876.193503 C = 8338.606260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.379 3.621 3 O -0.386 6.386 4 C -0.154 4.154 5 C -0.008 4.008 6 C -0.071 4.071 7 N 0.035 4.965 8 O -0.165 6.165 9 O -0.165 6.165 10 C -0.022 4.022 11 C -0.164 4.164 12 C 0.221 3.779 13 N -0.501 5.501 14 C 0.068 3.932 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.059 3.941 18 H 0.041 0.959 19 C -0.520 4.520 20 H 0.053 0.947 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.078 3.922 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.028 0.972 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 -11.712 -5.571 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.251 3.749 3 O -0.255 6.255 4 C -0.157 4.157 5 C -0.028 4.028 6 C -0.155 4.155 7 N 0.553 4.447 8 O -0.380 6.380 9 O -0.380 6.380 10 C -0.042 4.042 11 C -0.186 4.186 12 C 0.124 3.876 13 N -0.223 5.223 14 C -0.057 4.057 15 C -0.154 4.154 16 C -0.150 4.150 17 C 0.040 3.960 18 H 0.060 0.940 19 C -0.558 4.558 20 H 0.071 0.929 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.046 4.046 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.013 -9.898 -5.691 15.186 hybrid contribution 1.013 -1.102 0.872 1.732 sum -9.000 -11.000 -4.818 15.007 Atomic orbital electron populations 1.22270 0.93899 1.04771 1.04758 1.21985 0.90988 0.87285 0.74656 1.90760 1.71160 1.32550 1.31010 1.20726 0.93291 0.94792 1.06910 1.21254 1.01795 0.88945 0.90828 1.20919 0.92806 0.83605 1.18124 1.43570 1.01127 1.02770 0.97264 1.94538 1.69529 1.19872 1.54101 1.94526 0.95970 1.94122 1.53407 1.21061 0.90869 1.00628 0.91608 1.22016 1.02001 0.91571 1.02965 1.19725 0.92400 0.90230 0.85212 1.59581 1.30691 1.27078 1.04901 1.22160 0.94837 0.99341 0.89366 1.21676 0.99517 0.94756 0.99413 1.21687 0.96572 1.03273 0.93440 1.18660 0.94429 0.89514 0.93417 0.94044 1.21038 1.26193 1.01166 1.07421 0.92907 1.24911 0.96696 0.95861 0.96144 1.69872 1.42166 1.06315 1.34030 0.86673 0.80948 0.77290 0.83166 1.20349 1.21223 1.20275 1.22470 0.92143 1.01258 0.88746 0.88561 0.89114 0.90078 0.82068 0.82843 0.83115 0.94917 0.92125 0.91484 0.92959 0.88717 0.95017 0.92866 0.95366 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 9.64 36.00 0.35 -1.33 16 2 C 0.38 4.95 7.20 -30.92 -0.22 4.73 16 3 O -0.39 -6.87 15.80 5.53 0.09 -6.78 16 4 C -0.15 -1.94 5.88 -104.90 -0.62 -2.55 16 5 C -0.01 -0.09 8.82 -39.12 -0.35 -0.43 16 6 C -0.07 -0.82 6.84 -80.00 -0.55 -1.36 16 7 N 0.03 0.44 4.45 33.94 0.15 0.59 16 8 O -0.17 -2.22 18.43 -29.46 -0.54 -2.76 16 9 O -0.17 -2.15 18.42 -29.46 -0.54 -2.69 16 10 C -0.02 -0.23 9.53 -39.52 -0.38 -0.61 16 11 C -0.16 -1.95 8.67 -39.42 -0.34 -2.29 16 12 C 0.22 3.13 4.67 -83.57 -0.39 2.74 16 13 N -0.50 -8.58 2.57 -170.88 -0.44 -9.02 16 14 C 0.07 1.09 5.10 -3.84 -0.02 1.07 16 15 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 16 C -0.11 -2.49 5.02 -26.61 -0.13 -2.62 16 17 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 18 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.52 -13.74 8.56 -34.44 -0.29 -14.04 16 20 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -24.63 11.35 55.43 0.63 -24.00 16 23 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.08 1.54 4.39 -3.84 -0.02 1.52 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.08 0.49 6.69 -51.93 -0.35 0.15 16 31 H 0.16 1.29 6.04 -52.48 -0.32 0.98 16 32 H 0.15 1.36 7.59 -52.49 -0.40 0.96 16 33 H 0.15 1.66 7.11 -52.49 -0.37 1.29 16 34 H 0.03 0.48 7.30 -51.93 -0.38 0.10 16 35 H 0.06 0.87 8.10 -51.92 -0.42 0.45 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 42 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -29.73 349.43 -9.28 -39.01 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.45 Total: -0.77 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.42 Total: -14.58 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.34 Total: -32.43 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.00 Total: -12.24 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.73 -9.28 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853760837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.070 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds