Wall clock time and date at job start Tue Mar 31 2020 13:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21315 * 120.00406 * 2 1 4 4 C 1.46653 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.40059 * 120.24384 * 354.58324 * 4 2 1 6 6 C 1.37621 * 119.89854 * 180.26300 * 5 4 2 7 7 N 1.48025 * 119.80035 * 179.74582 * 6 5 4 8 8 O 1.21804 * 119.99699 * 180.02562 * 7 6 5 9 9 O 1.21800 * 120.00060 * 0.02562 * 7 6 5 10 10 C 1.38699 * 120.39439 * 359.75950 * 6 5 4 11 11 C 1.37930 * 120.49699 * 359.96633 * 10 6 5 12 12 C 1.38967 * 120.08494 * 0.02562 * 11 10 6 13 13 N 1.38698 * 120.19677 * 180.02562 * 12 11 10 14 14 C 1.46845 * 110.99658 * 59.55185 * 13 12 11 15 15 C 1.53035 * 109.52421 * 174.15940 * 14 13 12 16 16 C 1.53115 * 109.27834 * 59.17727 * 15 14 13 17 17 C 1.53116 * 109.16224 * 302.34748 * 16 15 14 18 18 H 1.08996 * 109.50185 * 297.67208 * 17 16 15 19 19 C 1.50701 * 109.50458 * 177.59170 * 17 16 15 20 20 H 1.07992 * 120.00379 * 240.00012 * 19 17 16 21 21 C 1.37881 * 119.99512 * 60.00251 * 19 17 16 22 22 N 1.31514 * 120.00366 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99719 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47452 * 59.99549 * 23 21 19 25 25 H 1.48499 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 299.99508 * 23 21 19 27 27 C 1.46838 * 111.00235 * 295.34442 * 13 12 11 28 28 H 1.09000 * 109.47209 * 270.00219 * 1 2 3 29 29 H 1.09007 * 109.47091 * 29.99756 * 1 2 3 30 30 H 1.08996 * 109.47835 * 149.99690 * 1 2 3 31 31 H 1.08006 * 120.05126 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.75070 * 179.97438 * 10 6 5 33 33 H 1.07993 * 119.96263 * 179.97438 * 11 10 6 34 34 H 1.09004 * 109.46572 * 294.17908 * 14 13 12 35 35 H 1.09010 * 109.46409 * 54.14340 * 14 13 12 36 36 H 1.09004 * 109.49984 * 299.23684 * 15 14 13 37 37 H 1.09005 * 109.50426 * 179.12462 * 15 14 13 38 38 H 1.09003 * 109.52279 * 182.44094 * 16 15 14 39 39 H 1.08999 * 109.51917 * 62.25586 * 16 15 14 40 40 H 0.97003 * 120.00033 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.46901 * 65.82059 * 27 13 12 42 42 H 1.09003 * 109.45633 * 305.84381 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2701 -0.0006 5 6 1.5497 -2.4833 0.1131 6 6 2.2453 -3.6708 0.1172 7 7 1.5138 -4.9515 0.2432 8 8 2.1259 -6.0045 0.2477 9 8 0.2998 -4.9522 0.3422 10 6 3.6277 -3.6747 0.0044 11 6 4.3236 -2.4897 -0.1141 12 6 3.6416 -1.2789 -0.1207 13 7 4.3391 -0.0861 -0.2403 14 6 5.1044 -0.0473 -1.4929 15 6 5.7418 1.3339 -1.6603 16 6 6.6623 1.6135 -0.4692 17 6 5.8510 1.5194 0.8260 18 1 5.0718 2.2815 0.8234 19 6 6.7618 1.7350 2.0071 20 1 6.8706 0.9621 2.7533 21 6 7.4562 2.9194 2.1349 22 7 7.3241 3.8606 1.2259 23 14 8.5858 3.1864 3.5985 24 1 9.6460 2.1467 3.6019 25 1 9.2110 4.5300 3.5026 26 1 7.7987 3.0948 4.8545 27 6 5.2105 0.1328 0.9212 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.4733 -2.4868 0.2021 32 1 4.1631 -4.6125 0.0092 33 1 5.4000 -2.5028 -0.2010 34 1 5.8857 -0.8069 -1.4650 35 1 4.4372 -0.2435 -2.3324 36 1 4.9603 2.0926 -1.7023 37 1 6.3225 1.3574 -2.5825 38 1 7.0850 2.6140 -0.5624 39 1 7.4664 0.8779 -0.4497 40 1 7.8129 4.6936 1.3157 41 1 5.9912 -0.6275 0.9380 42 1 4.6202 0.0675 1.8353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853760837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:14 Heat of formation + Delta-G solvation = -16.815126 kcal Electronic energy + Delta-G solvation = -27011.284236 eV Core-core repulsion = 23152.376352 eV Total energy + Delta-G solvation = -3858.907884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30375 -41.81658 -39.80660 -38.96630 -37.69631 -35.86626 -33.93931 -33.43246 -31.83041 -31.37063 -30.28237 -27.35661 -27.00104 -25.25590 -24.96973 -23.35521 -22.70989 -21.59985 -20.44538 -19.84766 -19.52400 -18.83479 -18.63657 -17.73769 -17.11172 -16.74496 -16.61886 -16.17677 -15.76983 -15.62815 -15.51754 -15.18340 -14.72916 -14.52090 -14.29370 -13.99327 -13.82857 -13.43792 -13.20106 -13.03632 -12.93133 -12.86897 -12.72662 -12.70455 -12.61591 -12.34109 -12.29205 -11.95360 -11.84548 -11.48098 -11.05093 -10.81668 -10.76859 -10.55304 -10.45600 -10.36287 -9.37571 -8.10532 -6.25546 -1.33475 -0.62720 0.12610 0.26934 1.29307 1.40328 1.41320 1.48904 2.22507 2.38810 2.61772 2.90087 3.16852 3.24831 3.47337 3.65635 3.80355 3.99148 4.09378 4.14800 4.22703 4.31715 4.33840 4.45565 4.48579 4.57770 4.64300 4.69444 4.75639 4.84897 4.86598 4.92609 5.05538 5.08507 5.25132 5.27629 5.31556 5.46179 5.60066 5.79549 6.02298 6.14158 6.26610 6.35731 6.47911 6.68935 6.86535 7.42731 8.93938 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.003554 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.184560 B = 7876.193503 C = 8338.606260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.379 3.621 3 O -0.448 6.448 4 C -0.164 4.164 5 C 0.012 3.988 6 C -0.074 4.074 7 N 0.035 4.965 8 O -0.181 6.181 9 O -0.163 6.163 10 C -0.008 4.008 11 C -0.160 4.160 12 C 0.196 3.804 13 N -0.513 5.513 14 C 0.072 3.928 15 C -0.108 4.108 16 C -0.103 4.103 17 C 0.058 3.942 18 H -0.009 1.009 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.016 3.984 22 N -0.914 5.914 23 Si 0.954 3.046 24 H -0.268 1.268 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.096 3.904 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.191 0.809 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.038 0.962 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 -14.312 -5.750 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.255 3.745 3 O -0.322 6.322 4 C -0.167 4.167 5 C -0.008 4.008 6 C -0.158 4.158 7 N 0.552 4.448 8 O -0.393 6.393 9 O -0.380 6.380 10 C -0.028 4.028 11 C -0.181 4.181 12 C 0.100 3.900 13 N -0.235 5.235 14 C -0.053 4.053 15 C -0.146 4.146 16 C -0.141 4.141 17 C 0.039 3.961 18 H 0.009 0.991 19 C -0.577 4.577 20 H 0.071 0.929 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.779 3.221 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.029 4.029 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.208 0.792 32 H 0.193 0.807 33 H 0.178 0.822 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.870 -12.555 -5.877 17.616 hybrid contribution 1.182 -0.336 0.924 1.537 sum -9.688 -12.892 -4.953 16.870 Atomic orbital electron populations 1.22308 0.90075 1.06356 1.06292 1.22769 0.93047 0.86508 0.72154 1.90761 1.72696 1.34421 1.34284 1.20781 0.92876 0.95487 1.07507 1.21411 1.03014 0.87583 0.88777 1.21044 0.93156 0.83306 1.18245 1.43690 1.01119 1.02979 0.97032 1.94548 1.69533 1.20308 1.54869 1.94521 0.96162 1.94209 1.53071 1.21245 0.90693 1.00995 0.89840 1.21998 1.02432 0.90913 1.02765 1.19814 0.93038 0.89748 0.87406 1.59294 1.30306 1.29754 1.04112 1.22140 0.95668 0.97813 0.89694 1.21556 0.98410 0.95996 0.98644 1.21461 0.96993 1.01175 0.94492 1.18518 0.93096 0.90724 0.93748 0.99087 1.21445 1.26549 1.01385 1.08323 0.92864 1.25703 0.98196 0.95699 0.98685 1.70035 1.43007 1.06610 1.35651 0.85684 0.79180 0.77321 0.79894 1.19306 1.21019 1.19936 1.22010 0.92425 0.98771 0.89716 0.86781 0.89038 0.87005 0.79235 0.80724 0.82160 0.93028 0.89947 0.93815 0.90397 0.92326 0.94817 0.93034 0.94348 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 9.64 71.23 0.69 -2.09 16 2 C 0.38 9.62 7.20 27.88 0.20 9.82 16 3 O -0.45 -16.57 15.80 -3.14 -0.05 -16.62 16 4 C -0.16 -3.82 5.88 -20.05 -0.12 -3.93 16 5 C 0.01 0.20 8.82 22.57 0.20 0.40 16 6 C -0.07 -1.45 6.84 36.34 0.25 -1.20 16 7 N 0.04 0.78 4.45 -46.54 -0.21 0.57 16 8 O -0.18 -4.37 18.43 18.88 0.35 -4.02 16 9 O -0.16 -3.70 18.42 18.89 0.35 -3.35 16 10 C -0.01 -0.15 9.53 22.31 0.21 0.07 16 11 C -0.16 -3.40 8.67 22.37 0.19 -3.20 16 12 C 0.20 5.28 4.67 38.82 0.18 5.47 16 13 N -0.51 -17.60 2.57 -694.55 -1.79 -19.38 16 14 C 0.07 2.22 5.10 86.33 0.44 2.66 16 15 C -0.11 -4.02 6.09 30.64 0.19 -3.83 16 16 C -0.10 -4.77 5.02 30.67 0.15 -4.61 16 17 C 0.06 2.92 2.26 -11.49 -0.03 2.90 16 18 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 19 C -0.54 -29.45 8.56 25.60 0.22 -29.24 16 20 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 21 C 0.02 0.90 5.30 84.66 0.45 1.35 16 22 N -0.91 -53.03 11.35 21.45 0.24 -52.79 16 23 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.10 3.88 4.39 86.33 0.38 4.26 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.11 0.90 6.69 -2.39 -0.02 0.88 16 31 H 0.19 2.19 6.04 -2.91 -0.02 2.17 16 32 H 0.18 2.44 7.59 -2.91 -0.02 2.42 16 33 H 0.16 3.08 7.11 -2.91 -0.02 3.06 16 34 H 0.05 1.41 7.30 -2.39 -0.02 1.39 16 35 H 0.08 2.21 8.10 -2.38 -0.02 2.19 16 36 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.06 3.13 6.15 -2.39 -0.01 3.11 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 42 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 Total: -1.00 -68.68 349.43 5.58 -63.11 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.05 Total: 8.35 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.61 Total: -21.18 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.75 Total: -71.59 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.65 Total: -24.00 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.68 5.58 -63.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853760837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.290 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds