Wall clock time and date at job start Tue Mar 31 2020 13:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21306 * 120.00160 * 2 1 4 4 C 1.46756 * 119.99447 * 180.02562 * 2 1 3 5 5 C 1.40127 * 120.09755 * 0.02562 * 4 2 1 6 6 C 1.36523 * 119.89880 * 179.69526 * 5 4 2 7 7 C 1.39333 * 120.09920 * 0.53898 * 6 5 4 8 8 N 1.38890 * 119.91034 * 179.76191 * 7 6 5 9 9 C 1.46849 * 110.99877 * 63.67383 * 8 7 6 10 10 C 1.53035 * 109.52197 * 174.16689 * 9 8 7 11 11 C 1.53121 * 109.28046 * 59.17940 * 10 9 8 12 12 C 1.53123 * 109.16129 * 302.34534 * 11 10 9 13 13 H 1.08993 * 109.50239 * 297.67374 * 12 11 10 14 14 C 1.50701 * 109.50173 * 177.59231 * 12 11 10 15 15 H 1.08002 * 119.99761 * 239.99653 * 14 12 11 16 16 C 1.37871 * 119.99694 * 60.28216 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.46847 * 110.99435 * 299.46956 * 8 7 6 23 23 C 1.39291 * 120.19109 * 359.48191 * 7 6 5 24 24 N 1.48013 * 119.95642 * 180.25791 * 23 7 6 25 25 O 1.21798 * 120.00149 * 180.02562 * 24 23 7 26 26 O 1.21799 * 119.99748 * 359.97438 * 24 23 7 27 27 C 1.36569 * 120.09690 * 0.23425 * 23 7 6 28 28 H 1.09000 * 109.47690 * 239.99704 * 1 2 3 29 29 H 1.09007 * 109.47348 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47263 * 119.99734 * 1 2 3 31 31 H 1.07998 * 120.04933 * 359.97438 * 5 4 2 32 32 H 1.08008 * 119.95174 * 180.29916 * 6 5 4 33 33 H 1.08994 * 109.46074 * 54.15163 * 9 8 7 34 34 H 1.09004 * 109.46119 * 294.18044 * 9 8 7 35 35 H 1.08999 * 109.50518 * 299.23822 * 10 9 8 36 36 H 1.09000 * 109.50237 * 179.11894 * 10 9 8 37 37 H 1.08994 * 109.52385 * 182.44373 * 11 10 9 38 38 H 1.08998 * 109.52294 * 62.25024 * 11 10 9 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46466 * 65.82242 * 22 8 7 41 41 H 1.08998 * 109.46337 * 305.85140 * 22 8 7 42 42 H 1.07996 * 120.05222 * 179.97438 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2406 -1.2710 -0.0006 5 6 1.5419 -2.4857 -0.0017 6 6 2.2285 -3.6657 -0.0085 7 6 3.6218 -3.6634 -0.0030 8 7 4.3163 -4.8662 -0.0050 9 6 4.0578 -5.6212 -1.2377 10 6 4.9473 -6.8660 -1.2712 11 6 4.6477 -7.7346 -0.0462 12 6 4.8783 -6.9099 1.2232 13 1 5.9248 -6.6104 1.2774 14 6 4.5288 -7.7390 2.4321 15 1 3.7535 -7.4087 3.1076 16 6 5.2028 -8.9161 2.6789 17 7 6.1469 -9.3183 1.8563 18 14 4.7750 -9.9399 4.1817 19 1 3.7098 -10.9133 3.8307 20 1 5.9823 -10.6720 4.6420 21 1 4.2928 -9.0485 5.2670 22 6 3.9907 -5.6638 1.1843 23 6 4.3204 -2.4584 -0.0015 24 7 5.8005 -2.4620 -0.0014 25 8 6.4121 -1.4088 0.0004 26 8 6.4068 -3.5184 -0.0023 27 6 3.6416 -1.2733 -0.0005 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8901 31 1 0.4619 -2.4883 -0.0017 32 1 1.6908 -4.6024 -0.0142 33 1 4.2788 -4.9936 -2.1010 34 1 3.0105 -5.9223 -1.2663 35 1 5.9949 -6.5652 -1.2565 36 1 4.7439 -7.4343 -2.1788 37 1 5.3094 -8.6006 -0.0431 38 1 3.6104 -8.0676 -0.0808 39 1 6.6213 -10.1463 2.0302 40 1 2.9438 -5.9647 1.1443 41 1 4.1629 -5.0671 2.0800 42 1 4.1839 -0.3394 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853761468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:13 Heat of formation + Delta-G solvation = -1.709558 kcal Electronic energy + Delta-G solvation = -27081.186432 eV Core-core repulsion = 23222.933574 eV Total energy + Delta-G solvation = -3858.252858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93695 -40.54174 -39.46092 -37.62375 -36.05196 -34.15466 -32.72837 -32.11718 -30.80382 -30.08445 -29.19196 -26.13676 -25.09054 -24.68921 -22.71531 -22.26982 -21.58522 -20.57451 -18.77334 -18.56250 -18.18007 -17.24756 -17.11910 -16.52750 -16.18255 -15.84242 -15.44753 -14.84510 -14.79499 -14.50576 -14.35981 -14.04986 -13.34307 -13.11413 -12.95007 -12.73523 -12.66766 -12.48407 -12.35092 -12.12410 -11.83639 -11.11250 -11.01266 -10.88116 -10.83856 -10.77091 -10.63367 -10.26374 -10.25582 -10.01035 -9.90982 -9.63781 -9.36626 -9.19821 -8.80757 -8.39781 -8.16128 -6.03324 -4.10583 -0.17068 0.23039 1.39906 1.65946 1.94397 3.11264 3.26632 3.34591 3.36433 3.51469 3.70428 4.23349 4.31841 4.40357 4.55389 4.60409 4.70440 4.88680 4.92585 5.21243 5.25236 5.27194 5.41003 5.42280 5.57320 5.61224 5.64829 5.79494 5.91622 6.03269 6.10504 6.28999 6.52956 6.58254 6.66807 6.78809 6.98205 7.04581 7.22120 7.29908 7.51164 7.69064 7.99808 8.06510 8.09266 8.36401 8.92595 9.54169 11.02590 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.003640 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.243015 B = 7690.059630 C = 8263.409450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.452 6.452 4 C -0.191 4.191 5 C -0.017 4.017 6 C -0.168 4.168 7 C 0.212 3.788 8 N -0.506 5.506 9 C 0.073 3.927 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.057 3.943 13 H 0.044 0.956 14 C -0.519 4.519 15 H 0.053 0.947 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.075 3.925 23 C -0.044 4.044 24 N 0.024 4.976 25 O -0.209 6.209 26 O -0.073 6.073 27 C 0.002 3.998 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 12.505 -6.773 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.327 6.327 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.189 4.189 7 C 0.115 3.885 8 N -0.228 5.228 9 C -0.052 4.052 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.039 3.961 13 H 0.063 0.937 14 C -0.558 4.558 15 H 0.071 0.929 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.049 4.049 23 C -0.128 4.128 24 N 0.548 4.452 25 O -0.408 6.408 26 O -0.309 6.309 27 C -0.018 4.018 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.552 13.157 -6.782 19.407 hybrid contribution -0.754 -0.894 0.839 1.439 sum -13.306 12.263 -5.943 19.046 Atomic orbital electron populations 1.22252 0.92950 1.05618 1.04786 1.22282 0.91851 0.86959 0.71195 1.90597 1.72117 1.34013 1.36007 1.20418 0.92809 0.95857 1.10192 1.21448 1.01028 0.90862 0.90269 1.21723 0.93676 1.00079 1.03436 1.19181 0.90541 0.91843 0.86918 1.59764 1.55108 1.02463 1.05443 1.22131 0.98335 0.95570 0.89171 1.21697 0.99995 0.94238 0.99535 1.21683 1.00095 1.00225 0.92885 1.18687 0.95694 0.88265 0.93491 0.93747 1.21054 1.19996 1.06177 1.08572 0.92901 1.24903 0.94803 0.97516 0.96381 1.69876 1.23205 1.22684 1.36433 0.86624 0.77874 0.80351 0.83290 1.20782 1.21148 1.20019 1.22525 0.98686 0.95788 0.87864 1.20907 0.81152 0.95097 1.15659 1.43328 1.02669 1.00741 0.98499 1.94510 1.68304 1.21444 1.56588 1.94707 1.68270 1.19493 1.48429 1.20949 0.93806 0.97820 0.89183 0.88501 0.89301 0.88573 0.83477 0.83099 0.92218 0.94793 0.91019 0.92901 0.88657 0.95078 0.92890 0.95165 0.92052 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.95 8.92 36.00 0.32 -0.63 16 2 C 0.40 3.67 7.21 -30.87 -0.22 3.45 16 3 O -0.45 -5.83 17.07 5.54 0.09 -5.73 16 4 C -0.19 -1.91 5.87 -105.05 -0.62 -2.53 16 5 C -0.02 -0.14 9.42 -39.49 -0.37 -0.51 16 6 C -0.17 -1.83 8.60 -39.79 -0.34 -2.17 16 7 C 0.21 3.11 4.66 -83.86 -0.39 2.72 16 8 N -0.51 -8.69 2.47 -171.14 -0.42 -9.12 16 9 C 0.07 1.15 5.15 -3.83 -0.02 1.13 16 10 C -0.12 -2.09 6.09 -26.65 -0.16 -2.26 16 11 C -0.11 -2.41 5.03 -26.61 -0.13 -2.55 16 12 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 13 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.52 -13.52 8.56 -34.44 -0.29 -13.82 16 15 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 16 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 17 N -0.88 -24.36 11.36 55.43 0.63 -23.73 16 18 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.08 1.46 4.33 -3.83 -0.02 1.45 16 23 C -0.04 -0.67 6.83 -80.16 -0.55 -1.22 16 24 N 0.02 0.44 4.45 33.86 0.15 0.59 16 25 O -0.21 -3.83 18.42 -29.46 -0.54 -4.38 16 26 O -0.07 -1.47 17.09 -29.46 -0.50 -1.97 16 27 C 0.00 0.03 9.05 -39.49 -0.36 -0.33 16 28 H 0.10 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.10 0.27 8.08 -51.92 -0.42 -0.15 16 31 H 0.15 0.60 7.03 -52.49 -0.37 0.23 16 32 H 0.15 1.47 7.09 -52.48 -0.37 1.10 16 33 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.03 0.48 7.49 -51.93 -0.39 0.09 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 2.37 6.16 -51.93 -0.32 2.05 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.03 0.55 7.33 -51.93 -0.38 0.17 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.16 2.11 7.16 -52.49 -0.38 1.74 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -30.52 350.37 -9.33 -39.85 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.54 Total: -1.88 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.46 Total: -14.47 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.36 Total: -32.25 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.95 Total: -12.08 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.52 -9.33 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds