Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21306 * 120.00160 * 2 1 4 4 C 1.46756 * 119.99447 * 180.02562 * 2 1 3 5 5 C 1.40127 * 120.09755 * 0.02562 * 4 2 1 6 6 C 1.36523 * 119.89880 * 179.69526 * 5 4 2 7 7 C 1.39333 * 120.09920 * 0.53898 * 6 5 4 8 8 N 1.38890 * 119.91034 * 179.76191 * 7 6 5 9 9 C 1.46849 * 110.99877 * 63.67383 * 8 7 6 10 10 C 1.53035 * 109.52197 * 174.16689 * 9 8 7 11 11 C 1.53121 * 109.28046 * 59.17940 * 10 9 8 12 12 C 1.53123 * 109.16129 * 302.34534 * 11 10 9 13 13 H 1.08993 * 109.50239 * 297.67374 * 12 11 10 14 14 C 1.50701 * 109.50173 * 177.59231 * 12 11 10 15 15 H 1.08002 * 119.99761 * 239.99653 * 14 12 11 16 16 C 1.37871 * 119.99694 * 60.28216 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.46847 * 110.99435 * 299.46956 * 8 7 6 23 23 C 1.39291 * 120.19109 * 359.48191 * 7 6 5 24 24 N 1.48013 * 119.95642 * 180.25791 * 23 7 6 25 25 O 1.21798 * 120.00149 * 180.02562 * 24 23 7 26 26 O 1.21799 * 119.99748 * 359.97438 * 24 23 7 27 27 C 1.36569 * 120.09690 * 0.23425 * 23 7 6 28 28 H 1.09000 * 109.47690 * 239.99704 * 1 2 3 29 29 H 1.09007 * 109.47348 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47263 * 119.99734 * 1 2 3 31 31 H 1.07998 * 120.04933 * 359.97438 * 5 4 2 32 32 H 1.08008 * 119.95174 * 180.29916 * 6 5 4 33 33 H 1.08994 * 109.46074 * 54.15163 * 9 8 7 34 34 H 1.09004 * 109.46119 * 294.18044 * 9 8 7 35 35 H 1.08999 * 109.50518 * 299.23822 * 10 9 8 36 36 H 1.09000 * 109.50237 * 179.11894 * 10 9 8 37 37 H 1.08994 * 109.52385 * 182.44373 * 11 10 9 38 38 H 1.08998 * 109.52294 * 62.25024 * 11 10 9 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46466 * 65.82242 * 22 8 7 41 41 H 1.08998 * 109.46337 * 305.85140 * 22 8 7 42 42 H 1.07996 * 120.05222 * 179.97438 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2406 -1.2710 -0.0006 5 6 1.5419 -2.4857 -0.0017 6 6 2.2285 -3.6657 -0.0085 7 6 3.6218 -3.6634 -0.0030 8 7 4.3163 -4.8662 -0.0050 9 6 4.0578 -5.6212 -1.2377 10 6 4.9473 -6.8660 -1.2712 11 6 4.6477 -7.7346 -0.0462 12 6 4.8783 -6.9099 1.2232 13 1 5.9248 -6.6104 1.2774 14 6 4.5288 -7.7390 2.4321 15 1 3.7535 -7.4087 3.1076 16 6 5.2028 -8.9161 2.6789 17 7 6.1469 -9.3183 1.8563 18 14 4.7750 -9.9399 4.1817 19 1 3.7098 -10.9133 3.8307 20 1 5.9823 -10.6720 4.6420 21 1 4.2928 -9.0485 5.2670 22 6 3.9907 -5.6638 1.1843 23 6 4.3204 -2.4584 -0.0015 24 7 5.8005 -2.4620 -0.0014 25 8 6.4121 -1.4088 0.0004 26 8 6.4068 -3.5184 -0.0023 27 6 3.6416 -1.2733 -0.0005 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8901 31 1 0.4619 -2.4883 -0.0017 32 1 1.6908 -4.6024 -0.0142 33 1 4.2788 -4.9936 -2.1010 34 1 3.0105 -5.9223 -1.2663 35 1 5.9949 -6.5652 -1.2565 36 1 4.7439 -7.4343 -2.1788 37 1 5.3094 -8.6006 -0.0431 38 1 3.6104 -8.0676 -0.0808 39 1 6.6213 -10.1463 2.0302 40 1 2.9438 -5.9647 1.1443 41 1 4.1629 -5.0671 2.0800 42 1 4.1839 -0.3394 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = -18.182967 kcal Electronic energy + Delta-G solvation = -27081.900773 eV Core-core repulsion = 23222.933574 eV Total energy + Delta-G solvation = -3858.967198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.21901 -41.59491 -40.48418 -38.80656 -37.47041 -35.74708 -33.98699 -33.43561 -31.78397 -31.60154 -30.10878 -27.37179 -26.96304 -25.81605 -23.69318 -23.57352 -23.17418 -21.59950 -20.36401 -19.70913 -19.41947 -18.62763 -18.46055 -17.76515 -17.20852 -17.08374 -16.53757 -16.16119 -15.84324 -15.72364 -15.42358 -15.35002 -14.64821 -14.50127 -14.28669 -13.84165 -13.74717 -13.48275 -13.30574 -12.99498 -12.84075 -12.82631 -12.68438 -12.57081 -12.56439 -12.21843 -12.12220 -11.89215 -11.78336 -11.40790 -11.04745 -10.97217 -10.83377 -10.72446 -10.38464 -10.22245 -9.44281 -8.05746 -6.20436 -1.26437 -0.75405 0.26490 0.46049 1.10212 1.42653 1.44878 1.53751 2.24282 2.39501 2.54382 2.83595 3.22060 3.32493 3.60048 3.65367 3.70973 3.88038 4.11155 4.17132 4.27421 4.34635 4.39256 4.49891 4.59179 4.70256 4.72675 4.74801 4.79018 4.83562 4.90258 5.04780 5.10095 5.13769 5.26857 5.33323 5.38186 5.51943 5.65975 5.82923 6.07170 6.20064 6.21078 6.38220 6.40240 6.59453 6.92305 7.47850 8.98895 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.003640 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.243015 B = 7690.059630 C = 8263.409450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.402 3.598 3 O -0.498 6.498 4 C -0.182 4.182 5 C 0.021 3.979 6 C -0.159 4.159 7 C 0.189 3.811 8 N -0.526 5.526 9 C 0.078 3.922 10 C -0.110 4.110 11 C -0.101 4.101 12 C 0.055 3.945 13 H -0.009 1.009 14 C -0.534 4.534 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.270 1.270 22 C 0.094 3.906 23 C -0.062 4.062 24 N 0.029 4.971 25 O -0.212 6.212 26 O -0.135 6.135 27 C -0.009 4.009 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.209 0.791 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 13.206 -7.139 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.283 3.717 3 O -0.376 6.376 4 C -0.184 4.184 5 C 0.003 3.997 6 C -0.180 4.180 7 C 0.093 3.907 8 N -0.248 5.248 9 C -0.046 4.046 10 C -0.148 4.148 11 C -0.139 4.139 12 C 0.036 3.964 13 H 0.009 0.991 14 C -0.573 4.573 15 H 0.074 0.926 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.030 4.030 23 C -0.147 4.147 24 N 0.544 4.456 25 O -0.416 6.416 26 O -0.359 6.359 27 C -0.029 4.029 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.146 0.854 31 H 0.226 0.774 32 H 0.192 0.808 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.724 13.779 -7.155 23.563 hybrid contribution 0.775 -0.938 0.942 1.538 sum -16.949 12.842 -6.213 22.154 Atomic orbital electron populations 1.22347 0.88434 1.06701 1.07459 1.22997 0.93945 0.85500 0.69267 1.90607 1.73430 1.35369 1.38228 1.20804 0.91370 0.97768 1.08473 1.22015 1.03584 0.88401 0.85720 1.21976 0.91484 1.02245 1.02265 1.19248 0.92188 0.89965 0.89341 1.59369 1.57170 1.03273 1.04977 1.22101 0.99083 0.94335 0.89103 1.21581 0.99177 0.95303 0.98761 1.21442 0.99368 0.99212 0.93857 1.18561 0.93606 0.90395 0.93860 0.99062 1.21462 1.19870 1.06484 1.09488 0.92613 1.25698 0.94801 0.98841 0.99044 1.70046 1.24225 1.22993 1.38054 0.85636 0.77570 0.78859 0.80028 1.19677 1.21506 1.19426 1.22078 0.98478 0.93880 0.88608 1.21058 0.78480 0.96626 1.18499 1.43830 1.04371 1.00051 0.97319 1.94457 1.69743 1.21470 1.55885 1.94711 1.69801 1.19780 1.51564 1.21035 0.95495 0.96410 0.89941 0.85668 0.89392 0.85389 0.77448 0.80779 0.90780 0.91885 0.93766 0.90278 0.92426 0.94319 0.93128 0.93000 0.93777 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.66 8.92 71.23 0.64 -0.03 16 2 C 0.40 5.86 7.21 27.91 0.20 6.06 16 3 O -0.50 -12.07 17.07 -3.11 -0.05 -12.12 16 4 C -0.18 -2.95 5.87 -20.14 -0.12 -3.07 16 5 C 0.02 0.21 9.42 22.33 0.21 0.42 16 6 C -0.16 -2.68 8.60 22.13 0.19 -2.49 16 7 C 0.19 5.24 4.66 38.54 0.18 5.42 16 8 N -0.53 -18.02 2.47 -695.37 -1.71 -19.73 16 9 C 0.08 2.35 5.15 86.32 0.44 2.79 16 10 C -0.11 -4.00 6.09 30.65 0.19 -3.82 16 11 C -0.10 -4.50 5.03 30.68 0.15 -4.35 16 12 C 0.05 2.68 2.26 -11.48 -0.03 2.66 16 13 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C -0.53 -28.49 8.56 25.60 0.22 -28.27 16 15 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.02 0.83 5.31 84.65 0.45 1.28 16 17 N -0.91 -52.60 11.36 21.45 0.24 -52.35 16 18 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.09 3.67 4.33 86.33 0.37 4.04 16 23 C -0.06 -1.89 6.83 36.24 0.25 -1.65 16 24 N 0.03 1.11 4.45 -46.79 -0.21 0.90 16 25 O -0.21 -8.25 18.42 18.89 0.35 -7.91 16 26 O -0.14 -5.94 17.09 18.89 0.32 -5.61 16 27 C -0.01 -0.23 9.05 22.33 0.20 -0.02 16 28 H 0.13 -0.17 8.08 -2.39 -0.02 -0.19 16 29 H 0.09 0.42 8.12 -2.38 -0.02 0.40 16 30 H 0.13 -0.27 8.08 -2.38 -0.02 -0.29 16 31 H 0.21 -0.32 7.03 -2.91 -0.02 -0.34 16 32 H 0.17 2.24 7.09 -2.91 -0.02 2.22 16 33 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.06 1.53 7.49 -2.38 -0.02 1.51 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.06 3.01 6.16 -2.39 -0.01 3.00 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.05 1.76 7.33 -2.39 -0.02 1.75 16 41 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 42 H 0.15 4.02 7.16 -2.91 -0.02 4.00 16 Total: -1.00 -75.43 350.37 5.56 -69.87 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.04 Total: 3.25 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 3.55 Total: -21.02 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.68 Total: -71.18 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.62 Total: -25.64 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -75.43 5.56 -69.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.687 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds