Wall clock time and date at job start Tue Mar 31 2020 13:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21314 * 120.00094 * 2 1 4 4 C 1.46754 * 120.00199 * 179.72360 * 2 1 3 5 5 C 1.40134 * 120.08985 * 359.72287 * 4 2 1 6 6 C 1.36533 * 119.89832 * 179.71991 * 5 4 2 7 7 C 1.39333 * 120.09468 * 0.58200 * 6 5 4 8 8 N 1.38889 * 119.90388 * 179.71879 * 7 6 5 9 9 C 1.46854 * 110.99835 * 300.25350 * 8 7 6 10 10 C 1.53033 * 109.52263 * 185.83991 * 9 8 7 11 11 C 1.53122 * 109.27960 * 300.82065 * 10 9 8 12 12 C 1.53122 * 109.15777 * 57.65617 * 11 10 9 13 13 H 1.08991 * 109.53345 * 62.30777 * 12 11 10 14 14 C 1.50702 * 109.49885 * 182.40643 * 12 11 10 15 15 H 1.07999 * 119.99823 * 119.80472 * 14 12 11 16 16 C 1.37873 * 120.00099 * 299.80054 * 14 12 11 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00362 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46660 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47219 * 119.99769 * 18 16 14 21 21 H 1.48498 * 109.46849 * 240.00228 * 18 16 14 22 22 C 1.46840 * 111.00084 * 64.46431 * 8 7 6 23 23 C 1.39293 * 120.19183 * 359.69027 * 7 6 5 24 24 N 1.48018 * 119.95155 * 180.02562 * 23 7 6 25 25 O 1.21798 * 119.99948 * 174.57754 * 24 23 7 26 26 O 1.21800 * 120.00081 * 354.58879 * 24 23 7 27 27 C 1.36560 * 120.09864 * 0.02562 * 23 7 6 28 28 H 1.09008 * 109.46980 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47129 * 120.00036 * 1 2 3 30 30 H 1.09002 * 109.47108 * 240.00450 * 1 2 3 31 31 H 1.07995 * 120.04765 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.94845 * 180.27049 * 6 5 4 33 33 H 1.08996 * 109.46123 * 305.86245 * 9 8 7 34 34 H 1.09004 * 109.45875 * 65.82435 * 9 8 7 35 35 H 1.08999 * 109.50052 * 180.88437 * 10 9 8 36 36 H 1.08996 * 109.50715 * 60.76309 * 10 9 8 37 37 H 1.09002 * 109.51975 * 297.75455 * 11 10 9 38 38 H 1.08996 * 109.51895 * 177.56318 * 11 10 9 39 39 H 0.97000 * 120.00200 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46204 * 294.17729 * 22 8 7 41 41 H 1.08995 * 109.46752 * 54.15835 * 22 8 7 42 42 H 1.08004 * 120.05144 * 180.02562 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2408 -1.2709 0.0061 5 6 1.5421 -2.4856 0.0179 6 6 2.2287 -3.6657 0.0177 7 6 3.6220 -3.6633 0.0182 8 7 4.3165 -4.8661 0.0240 9 6 3.9810 -5.6618 1.2119 10 6 4.8682 -6.9077 1.2601 11 6 4.6483 -7.7345 -0.0098 12 6 4.9582 -6.8679 -1.2335 13 1 6.0055 -6.5670 -1.2113 14 6 4.6875 -7.6557 -2.4894 15 1 3.9541 -7.3040 -3.1999 16 6 5.3761 -8.8254 -2.7313 17 7 6.2690 -9.2538 -1.8659 18 14 5.0412 -9.8016 -4.2883 19 1 3.9995 -9.1115 -5.0907 20 1 6.2903 -9.9078 -5.0843 21 1 4.5670 -11.1617 -3.9273 22 6 4.0683 -5.6230 -1.2095 23 6 4.3205 -2.4582 0.0123 24 7 5.8007 -2.4619 0.0123 25 8 6.4123 -1.4138 -0.0925 26 8 6.4071 -3.5130 0.1169 27 6 3.6417 -1.2732 0.0066 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 0.4621 -2.4882 0.0220 32 1 1.6910 -4.6023 0.0224 33 1 4.1457 -5.0636 2.1080 34 1 2.9344 -5.9627 1.1636 35 1 4.6082 -7.5060 2.1334 36 1 5.9142 -6.6075 1.3223 37 1 3.6113 -8.0676 -0.0525 38 1 5.3100 -8.6005 0.0004 39 1 6.7532 -10.0769 -2.0359 40 1 3.0214 -5.9242 -1.2464 41 1 4.2967 -4.9969 -2.0720 42 1 4.1840 -0.3393 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853761470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:17 Heat of formation + Delta-G solvation = -1.866277 kcal Electronic energy + Delta-G solvation = -27086.130120 eV Core-core repulsion = 23227.870466 eV Total energy + Delta-G solvation = -3858.259653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93221 -40.54022 -39.46063 -37.62410 -36.04629 -34.15720 -32.73563 -32.10176 -30.81533 -30.08401 -29.19189 -26.13514 -25.09335 -24.68750 -22.71068 -22.28950 -21.57438 -20.57201 -18.77788 -18.56019 -18.17826 -17.24930 -17.11674 -16.52962 -16.17828 -15.84150 -15.44746 -14.86095 -14.78680 -14.49542 -14.37746 -14.04047 -13.33214 -13.12018 -12.95306 -12.72982 -12.67280 -12.48628 -12.35656 -12.12645 -11.83893 -11.10735 -11.03008 -10.87865 -10.83158 -10.75596 -10.62646 -10.26591 -10.25290 -10.01637 -9.90862 -9.64976 -9.37254 -9.18298 -8.80506 -8.40013 -8.16584 -6.03620 -4.10725 -0.16732 0.23299 1.39927 1.66334 1.94381 3.11206 3.26203 3.34882 3.36948 3.51456 3.70314 4.23168 4.31772 4.40308 4.55403 4.60332 4.70443 4.88705 4.92519 5.21042 5.24931 5.27042 5.40868 5.42406 5.57407 5.61555 5.64926 5.79373 5.92054 6.02391 6.10320 6.28595 6.52740 6.57956 6.67180 6.78607 6.97916 7.04601 7.21918 7.29589 7.50928 7.69112 7.99525 8.06769 8.09124 8.36181 8.92634 9.54071 11.02361 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003629 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.771683 B = 7714.422222 C = 8199.074610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.452 6.452 4 C -0.191 4.191 5 C -0.017 4.017 6 C -0.169 4.169 7 C 0.212 3.788 8 N -0.506 5.506 9 C 0.072 3.928 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.057 3.943 13 H 0.045 0.955 14 C -0.519 4.519 15 H 0.053 0.947 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.076 3.924 23 C -0.043 4.043 24 N 0.024 4.976 25 O -0.208 6.208 26 O -0.073 6.073 27 C 0.002 3.998 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 12.288 6.870 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.327 6.327 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.189 4.189 7 C 0.115 3.885 8 N -0.228 5.228 9 C -0.053 4.053 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.038 3.962 13 H 0.063 0.937 14 C -0.557 4.557 15 H 0.071 0.929 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.048 4.048 23 C -0.128 4.128 24 N 0.548 4.452 25 O -0.408 6.408 26 O -0.309 6.309 27 C -0.018 4.018 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.999 12.937 6.895 19.593 hybrid contribution -0.689 -0.871 -0.917 1.441 sum -13.688 12.066 5.978 19.201 Atomic orbital electron populations 1.22250 0.92948 1.05618 1.04781 1.22285 0.91851 0.86961 0.71196 1.90599 1.72118 1.34013 1.36008 1.20415 0.92807 0.95855 1.10197 1.21449 1.01018 0.90863 0.90293 1.21714 0.93658 1.00063 1.03496 1.19176 0.90541 0.91847 0.86930 1.59760 1.54952 1.02403 1.05678 1.22145 0.97930 0.95151 0.90107 1.21693 0.99986 0.94193 0.99585 1.21681 1.00167 1.00528 0.92510 1.18694 0.95550 0.88211 0.93720 0.93735 1.21091 1.22488 1.07241 1.04923 0.92855 1.24907 0.94862 0.97391 0.96464 1.69891 1.24832 1.22455 1.35008 0.86568 0.78145 0.79921 0.83522 1.19940 1.20936 1.21057 1.22516 0.99116 0.96365 0.86754 1.20901 0.81161 0.95090 1.15627 1.43322 1.02658 1.00705 0.98533 1.94512 1.68309 1.21773 1.56208 1.94702 1.68265 1.19763 1.48194 1.20943 0.93809 0.97811 0.89189 0.89301 0.88509 0.88570 0.83482 0.83125 0.92109 0.94815 0.92895 0.91027 0.95074 0.88667 0.92949 0.95134 0.92145 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.95 8.92 36.00 0.32 -0.63 16 2 C 0.40 3.67 7.21 -30.87 -0.22 3.45 16 3 O -0.45 -5.83 17.07 5.53 0.09 -5.74 16 4 C -0.19 -1.91 5.87 -105.05 -0.62 -2.53 16 5 C -0.02 -0.14 9.42 -39.49 -0.37 -0.51 16 6 C -0.17 -1.82 8.61 -39.79 -0.34 -2.17 16 7 C 0.21 3.11 4.66 -83.86 -0.39 2.72 16 8 N -0.51 -8.70 2.48 -171.15 -0.43 -9.12 16 9 C 0.07 1.12 5.10 -3.83 -0.02 1.10 16 10 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 11 C -0.11 -2.41 5.03 -26.60 -0.13 -2.55 16 12 C 0.06 1.34 2.26 -91.69 -0.21 1.14 16 13 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.52 -13.55 8.56 -34.44 -0.29 -13.85 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.38 11.36 55.43 0.63 -23.75 16 18 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.08 1.49 4.38 -3.84 -0.02 1.47 16 23 C -0.04 -0.67 6.82 -80.16 -0.55 -1.21 16 24 N 0.02 0.44 4.45 33.86 0.15 0.60 16 25 O -0.21 -3.85 18.43 -29.46 -0.54 -4.39 16 26 O -0.07 -1.48 17.11 -29.46 -0.50 -1.98 16 27 C 0.00 0.03 9.05 -39.49 -0.36 -0.33 16 28 H 0.09 0.43 8.12 -51.92 -0.42 0.01 16 29 H 0.10 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.10 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.15 0.59 7.03 -52.49 -0.37 0.23 16 32 H 0.15 1.45 7.09 -52.49 -0.37 1.08 16 33 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.03 0.47 7.29 -51.93 -0.38 0.10 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 2.37 6.16 -51.93 -0.32 2.05 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.03 0.56 7.54 -51.93 -0.39 0.17 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.16 2.12 7.17 -52.48 -0.38 1.74 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -30.63 350.44 -9.34 -39.96 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.54 Total: -1.96 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -3.46 Total: -14.49 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.36 Total: -32.28 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.95 Total: -12.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.63 -9.34 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.095 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds