Wall clock time and date at job start Tue Mar 31 2020 13:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21314 * 120.00094 * 2 1 4 4 C 1.46754 * 120.00199 * 179.72360 * 2 1 3 5 5 C 1.40134 * 120.08985 * 359.72287 * 4 2 1 6 6 C 1.36533 * 119.89832 * 179.71991 * 5 4 2 7 7 C 1.39333 * 120.09468 * 0.58200 * 6 5 4 8 8 N 1.38889 * 119.90388 * 179.71879 * 7 6 5 9 9 C 1.46854 * 110.99835 * 300.25350 * 8 7 6 10 10 C 1.53033 * 109.52263 * 185.83991 * 9 8 7 11 11 C 1.53122 * 109.27960 * 300.82065 * 10 9 8 12 12 C 1.53122 * 109.15777 * 57.65617 * 11 10 9 13 13 H 1.08991 * 109.53345 * 62.30777 * 12 11 10 14 14 C 1.50702 * 109.49885 * 182.40643 * 12 11 10 15 15 H 1.07999 * 119.99823 * 119.80472 * 14 12 11 16 16 C 1.37873 * 120.00099 * 299.80054 * 14 12 11 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00362 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46660 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47219 * 119.99769 * 18 16 14 21 21 H 1.48498 * 109.46849 * 240.00228 * 18 16 14 22 22 C 1.46840 * 111.00084 * 64.46431 * 8 7 6 23 23 C 1.39293 * 120.19183 * 359.69027 * 7 6 5 24 24 N 1.48018 * 119.95155 * 180.02562 * 23 7 6 25 25 O 1.21798 * 119.99948 * 174.57754 * 24 23 7 26 26 O 1.21800 * 120.00081 * 354.58879 * 24 23 7 27 27 C 1.36560 * 120.09864 * 0.02562 * 23 7 6 28 28 H 1.09008 * 109.46980 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47129 * 120.00036 * 1 2 3 30 30 H 1.09002 * 109.47108 * 240.00450 * 1 2 3 31 31 H 1.07995 * 120.04765 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.94845 * 180.27049 * 6 5 4 33 33 H 1.08996 * 109.46123 * 305.86245 * 9 8 7 34 34 H 1.09004 * 109.45875 * 65.82435 * 9 8 7 35 35 H 1.08999 * 109.50052 * 180.88437 * 10 9 8 36 36 H 1.08996 * 109.50715 * 60.76309 * 10 9 8 37 37 H 1.09002 * 109.51975 * 297.75455 * 11 10 9 38 38 H 1.08996 * 109.51895 * 177.56318 * 11 10 9 39 39 H 0.97000 * 120.00200 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46204 * 294.17729 * 22 8 7 41 41 H 1.08995 * 109.46752 * 54.15835 * 22 8 7 42 42 H 1.08004 * 120.05144 * 180.02562 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2408 -1.2709 0.0061 5 6 1.5421 -2.4856 0.0179 6 6 2.2287 -3.6657 0.0177 7 6 3.6220 -3.6633 0.0182 8 7 4.3165 -4.8661 0.0240 9 6 3.9810 -5.6618 1.2119 10 6 4.8682 -6.9077 1.2601 11 6 4.6483 -7.7345 -0.0098 12 6 4.9582 -6.8679 -1.2335 13 1 6.0055 -6.5670 -1.2113 14 6 4.6875 -7.6557 -2.4894 15 1 3.9541 -7.3040 -3.1999 16 6 5.3761 -8.8254 -2.7313 17 7 6.2690 -9.2538 -1.8659 18 14 5.0412 -9.8016 -4.2883 19 1 3.9995 -9.1115 -5.0907 20 1 6.2903 -9.9078 -5.0843 21 1 4.5670 -11.1617 -3.9273 22 6 4.0683 -5.6230 -1.2095 23 6 4.3205 -2.4582 0.0123 24 7 5.8007 -2.4619 0.0123 25 8 6.4123 -1.4138 -0.0925 26 8 6.4071 -3.5130 0.1169 27 6 3.6417 -1.2732 0.0066 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 0.4621 -2.4882 0.0220 32 1 1.6910 -4.6023 0.0224 33 1 4.1457 -5.0636 2.1080 34 1 2.9344 -5.9627 1.1636 35 1 4.6082 -7.5060 2.1334 36 1 5.9142 -6.6075 1.3223 37 1 3.6113 -8.0676 -0.0525 38 1 5.3100 -8.6005 0.0004 39 1 6.7532 -10.0769 -2.0359 40 1 3.0214 -5.9242 -1.2464 41 1 4.2967 -4.9969 -2.0720 42 1 4.1840 -0.3393 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:16 Heat of formation + Delta-G solvation = -18.504190 kcal Electronic energy + Delta-G solvation = -27086.851594 eV Core-core repulsion = 23227.870466 eV Total energy + Delta-G solvation = -3858.981127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21924 -41.59518 -40.48377 -38.80715 -37.47215 -35.75249 -33.99152 -33.42647 -31.80226 -31.59125 -30.10956 -27.37601 -26.96574 -25.81585 -23.70024 -23.58503 -23.16008 -21.60092 -20.36647 -19.70980 -19.42442 -18.63504 -18.46116 -17.77210 -17.20746 -17.07826 -16.54651 -16.16006 -15.84017 -15.73092 -15.42472 -15.34595 -14.65343 -14.51265 -14.26706 -13.84664 -13.74864 -13.48449 -13.30771 -12.99506 -12.87720 -12.83226 -12.67744 -12.56993 -12.54556 -12.22117 -12.12300 -11.88412 -11.78988 -11.41722 -11.04818 -10.97385 -10.83195 -10.71727 -10.40074 -10.21902 -9.44636 -8.06560 -6.21137 -1.26176 -0.75425 0.26088 0.46124 1.10093 1.41459 1.44148 1.54089 2.24089 2.39348 2.54098 2.83630 3.21334 3.32520 3.60035 3.65394 3.71004 3.88223 4.11711 4.17532 4.27396 4.34446 4.39147 4.49743 4.59753 4.70355 4.72768 4.74631 4.78942 4.83543 4.89763 5.05297 5.09947 5.13635 5.26911 5.33296 5.38435 5.51730 5.65625 5.82870 6.06770 6.19867 6.20786 6.38225 6.39659 6.59122 6.91644 7.47128 8.98294 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003629 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.771683 B = 7714.422222 C = 8199.074610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.402 3.598 3 O -0.499 6.499 4 C -0.182 4.182 5 C 0.021 3.979 6 C -0.159 4.159 7 C 0.189 3.811 8 N -0.526 5.526 9 C 0.077 3.923 10 C -0.110 4.110 11 C -0.101 4.101 12 C 0.054 3.946 13 H -0.009 1.009 14 C -0.534 4.534 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.095 3.905 23 C -0.062 4.062 24 N 0.028 4.972 25 O -0.213 6.213 26 O -0.134 6.134 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.209 0.791 32 H 0.176 0.824 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.478 12.930 7.190 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.283 3.717 3 O -0.377 6.377 4 C -0.184 4.184 5 C 0.003 3.997 6 C -0.179 4.179 7 C 0.092 3.908 8 N -0.248 5.248 9 C -0.048 4.048 10 C -0.148 4.148 11 C -0.139 4.139 12 C 0.036 3.964 13 H 0.009 0.991 14 C -0.573 4.573 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.029 4.029 23 C -0.147 4.147 24 N 0.544 4.456 25 O -0.417 6.417 26 O -0.358 6.358 27 C -0.029 4.029 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.226 0.774 32 H 0.193 0.807 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.217 13.507 7.231 23.803 hybrid contribution 0.853 -0.902 -1.012 1.601 sum -17.364 12.605 6.219 22.340 Atomic orbital electron populations 1.22346 0.88409 1.06703 1.07466 1.23006 0.93956 0.85500 0.69262 1.90610 1.73438 1.35378 1.38236 1.20804 0.91352 0.97791 1.08465 1.22021 1.03587 0.88388 0.85725 1.21977 0.91435 1.02265 1.02249 1.19248 0.92205 0.89950 0.89366 1.59360 1.57149 1.03290 1.05030 1.22125 0.98639 0.93859 0.90132 1.21579 0.99288 0.95424 0.98533 1.21439 0.99372 0.99371 0.93700 1.18565 0.93508 0.90385 0.93978 0.99064 1.21488 1.22327 1.07518 1.05945 0.92699 1.25698 0.94783 0.98574 0.99330 1.70055 1.25755 1.22787 1.36684 0.85584 0.77874 0.78675 0.79957 1.18931 1.21333 1.20374 1.22059 0.98839 0.94363 0.87654 1.21061 0.78449 0.96660 1.18487 1.43833 1.04390 1.00001 0.97357 1.94459 1.69771 1.21806 1.55621 1.94704 1.69814 1.20063 1.51205 1.21027 0.95514 0.96388 0.89981 0.89399 0.85674 0.85358 0.77416 0.80703 0.90484 0.91842 0.90201 0.93763 0.94302 0.92441 0.93114 0.93055 0.94056 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.66 8.92 71.24 0.64 -0.02 16 2 C 0.40 5.86 7.21 27.91 0.20 6.07 16 3 O -0.50 -12.10 17.07 -3.14 -0.05 -12.16 16 4 C -0.18 -2.96 5.87 -20.14 -0.12 -3.07 16 5 C 0.02 0.21 9.42 22.33 0.21 0.42 16 6 C -0.16 -2.64 8.61 22.13 0.19 -2.45 16 7 C 0.19 5.23 4.66 38.54 0.18 5.41 16 8 N -0.53 -18.02 2.48 -695.38 -1.73 -19.75 16 9 C 0.08 2.28 5.10 86.32 0.44 2.72 16 10 C -0.11 -3.98 6.09 30.65 0.19 -3.79 16 11 C -0.10 -4.50 5.03 30.68 0.15 -4.34 16 12 C 0.05 2.69 2.26 -11.48 -0.03 2.66 16 13 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C -0.53 -28.62 8.56 25.60 0.22 -28.40 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 16 C 0.02 0.83 5.30 84.65 0.45 1.28 16 17 N -0.91 -52.63 11.36 21.45 0.24 -52.38 16 18 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.10 3.74 4.38 86.33 0.38 4.12 16 23 C -0.06 -1.90 6.82 36.24 0.25 -1.65 16 24 N 0.03 1.11 4.45 -46.79 -0.21 0.90 16 25 O -0.21 -8.39 18.43 18.89 0.35 -8.04 16 26 O -0.13 -5.90 17.11 18.89 0.32 -5.58 16 27 C -0.01 -0.23 9.05 22.33 0.20 -0.03 16 28 H 0.09 0.42 8.12 -2.38 -0.02 0.40 16 29 H 0.13 -0.17 8.10 -2.39 -0.02 -0.19 16 30 H 0.13 -0.28 8.07 -2.39 -0.02 -0.30 16 31 H 0.21 -0.36 7.03 -2.91 -0.02 -0.38 16 32 H 0.18 2.19 7.09 -2.91 -0.02 2.17 16 33 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.06 1.51 7.29 -2.38 -0.02 1.49 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 3.00 6.16 -2.39 -0.01 2.98 16 39 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.05 1.77 7.54 -2.39 -0.02 1.75 16 41 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.15 4.03 7.17 -2.91 -0.02 4.01 16 Total: -1.00 -75.92 350.44 5.54 -70.38 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.04 Total: 2.83 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.55 Total: -21.09 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.69 Total: -71.23 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.62 Total: -25.78 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.92 5.54 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.877 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds