Wall clock time and date at job start Tue Mar 31 2020 12:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47316 * 239.99878 * 2 1 3 5 5 O 1.21286 * 119.99766 * 240.00238 * 4 2 1 6 6 N 1.34777 * 120.00379 * 60.00122 * 4 2 1 7 7 C 1.39917 * 120.00084 * 175.49513 * 6 4 2 8 8 C 1.38960 * 120.03694 * 35.14010 * 7 6 4 9 9 C 1.38159 * 120.06617 * 179.97438 * 8 7 6 10 10 C 1.38173 * 120.13897 * 359.72264 * 9 8 7 11 11 C 1.38910 * 120.06900 * 0.54951 * 10 9 8 12 12 O 1.35743 * 120.03357 * 179.71990 * 11 10 9 13 13 C 1.34834 * 117.00100 * 185.05107 * 12 11 10 14 14 H 1.07992 * 119.99839 * 354.67696 * 13 12 11 15 15 C 1.38653 * 119.99868 * 174.95317 * 13 12 11 16 16 N 1.31563 * 120.00013 * 179.72468 * 15 13 12 17 17 Si 1.86802 * 120.00268 * 359.72072 * 15 13 12 18 18 H 1.48497 * 109.46780 * 90.00144 * 17 15 13 19 19 H 1.48497 * 109.47250 * 209.99690 * 17 15 13 20 20 H 1.48495 * 109.46954 * 330.00543 * 17 15 13 21 21 C 1.38715 * 120.03197 * 215.11445 * 7 6 4 22 22 C 1.53001 * 109.46776 * 119.99652 * 2 1 3 23 23 H 1.08999 * 110.21355 * 178.07144 * 22 2 1 24 24 C 1.54481 * 110.24614 * 300.00071 * 22 2 1 25 25 C 1.54630 * 101.76325 * 93.58788 * 24 22 2 26 26 C 1.51279 * 104.19875 * 24.79474 * 25 24 22 27 27 O 1.21285 * 124.94554 * 163.70989 * 26 25 24 28 28 N 1.34421 * 110.11604 * 343.75135 * 26 25 24 29 29 H 1.09005 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47529 * 300.00263 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00268 * 1 2 3 32 32 H 0.97005 * 119.99272 * 355.49145 * 6 4 2 33 33 H 1.07995 * 119.97201 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.93154 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.96618 * 180.27680 * 10 9 8 36 36 H 0.96997 * 119.99799 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.07433 * 0.04252 * 21 7 6 38 38 H 1.09004 * 110.96852 * 211.70030 * 24 22 2 39 39 H 1.08997 * 110.97187 * 335.42919 * 24 22 2 40 40 H 1.08997 * 110.48956 * 143.47352 * 25 24 22 41 41 H 1.09000 * 110.48372 * 266.11659 * 25 24 22 42 42 H 0.96996 * 124.35297 * 179.59529 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7069 -0.2500 -2.4546 7 6 2.2491 -0.8519 -3.5953 8 6 2.4780 -2.2224 -3.6166 9 6 3.0129 -2.8175 -4.7429 10 6 3.3165 -2.0534 -5.8534 11 6 3.0953 -0.6821 -5.8364 12 8 3.3991 0.0687 -6.9257 13 6 3.2588 1.4044 -6.8070 14 1 2.8370 1.8251 -5.9062 15 6 3.6506 2.2374 -7.8439 16 7 3.5086 3.5404 -7.7303 17 14 4.3801 1.5097 -9.4020 18 1 3.2922 1.2259 -10.3721 19 1 5.3361 2.4764 -9.9993 20 1 5.0916 0.2485 -9.0732 21 6 2.5582 -0.0813 -4.7065 22 6 2.0399 -0.7212 1.2493 23 1 3.1293 -0.7582 1.2446 24 6 1.5348 -0.0069 2.5225 25 6 0.2432 -0.7971 2.8360 26 6 0.4698 -2.1482 2.1942 27 8 -0.1700 -3.1492 2.4380 28 7 1.4842 -2.0780 1.3149 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.0966 0.4986 -2.5446 33 1 2.2376 -2.8230 -2.7518 34 1 3.1903 -3.8827 -4.7569 35 1 3.7304 -2.5221 -6.7340 36 1 3.7823 4.1232 -8.4558 37 1 2.3815 0.9840 -4.6925 38 1 2.2561 -0.1005 3.3345 39 1 1.3124 1.0407 2.3199 40 1 0.1128 -0.9035 3.9129 41 1 -0.6223 -0.3046 2.3928 42 1 1.8073 -2.8277 0.7911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858556427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:35 Heat of formation + Delta-G solvation = -68.557083 kcal Electronic energy + Delta-G solvation = -26274.497931 eV Core-core repulsion = 22413.346347 eV Total energy + Delta-G solvation = -3861.151584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33334 -40.00361 -38.86150 -37.19085 -36.45123 -34.48935 -32.84876 -32.37345 -31.54004 -29.50432 -28.76727 -27.90127 -25.33561 -24.58277 -22.57444 -21.84240 -21.10391 -20.71266 -19.79969 -18.17852 -17.87587 -17.47426 -17.12148 -16.60566 -15.81539 -15.62972 -15.23209 -14.88720 -14.62164 -14.40015 -14.09107 -13.83773 -13.68689 -13.63887 -13.57389 -13.12991 -13.01833 -12.62752 -12.47548 -12.32037 -12.19852 -11.86902 -11.74366 -11.52682 -11.28317 -11.22473 -10.97615 -10.85683 -10.32010 -10.09891 -9.92872 -9.62885 -9.51772 -9.30253 -8.90719 -7.88863 -7.37103 -6.47834 -4.15374 1.80234 2.21164 2.39136 2.67241 3.05458 3.19403 3.19823 3.22178 3.36952 4.01163 4.08268 4.19070 4.19453 4.41501 4.53777 4.59335 4.63922 4.79300 4.82222 5.02504 5.06593 5.15481 5.28823 5.34526 5.40420 5.50718 5.55157 5.62177 5.77693 5.85662 5.91445 6.09022 6.12839 6.42060 6.62870 6.81101 6.83912 6.90854 7.11589 7.14721 7.47776 7.60713 7.70895 7.96224 8.07796 8.16258 8.87657 9.49577 10.59767 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002751 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.001665 B =10175.192187 C =10937.221528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.523 6.523 6 N -0.665 5.665 7 C 0.175 3.825 8 C -0.197 4.197 9 C -0.066 4.066 10 C -0.199 4.199 11 C 0.173 3.827 12 O -0.215 6.215 13 C -0.391 4.391 14 H 0.105 0.895 15 C 0.064 3.936 16 N -0.880 5.880 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.244 4.244 22 C 0.150 3.850 23 H 0.099 0.901 24 C -0.128 4.128 25 C -0.163 4.163 26 C 0.516 3.484 27 O -0.541 6.541 28 N -0.714 5.714 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.280 0.720 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -3.364 18.076 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 H 0.133 0.867 4 C 0.306 3.694 5 O -0.399 6.399 6 N -0.309 5.309 7 C 0.082 3.918 8 C -0.218 4.218 9 C -0.085 4.085 10 C -0.218 4.218 11 C 0.121 3.879 12 O -0.120 6.120 13 C -0.466 4.466 14 H 0.122 0.878 15 C -0.139 4.139 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.265 4.265 22 C 0.043 3.957 23 H 0.117 0.883 24 C -0.166 4.166 25 C -0.203 4.203 26 C 0.302 3.698 27 O -0.418 6.418 28 N -0.369 5.369 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.644 -4.318 18.063 19.144 hybrid contribution 0.180 0.263 -1.090 1.136 sum -4.464 -4.056 16.972 18.012 Atomic orbital electron populations 1.22003 0.92520 1.03290 1.03348 1.21853 0.98368 1.01467 0.93004 0.86716 1.20547 0.79878 0.84726 0.84262 1.90670 1.37390 1.25371 1.86439 1.43464 1.47076 1.35675 1.04716 1.17438 0.97021 0.91615 0.85718 1.20728 1.08651 0.92775 0.99603 1.20567 0.97200 0.98637 0.92108 1.20274 1.09978 0.91469 1.00124 1.18793 0.92385 0.90698 0.86056 1.83602 1.76548 1.20019 1.31875 1.20716 1.43023 0.77061 1.05805 0.87796 1.24460 0.96199 0.94372 0.98885 1.69640 1.46080 1.02175 1.33909 0.86177 0.79460 0.79574 0.81706 1.19852 1.20800 1.18285 1.20939 1.10364 1.00738 0.94446 1.21399 0.99469 0.81864 0.92972 0.88291 1.22674 0.96901 1.00195 0.96789 1.22532 0.99919 0.94624 1.03197 1.20906 0.79275 0.90238 0.79339 1.90761 1.50250 1.35995 1.64793 1.46321 1.35315 1.12182 1.43111 0.91788 0.90551 0.91519 0.75667 0.85721 0.86450 0.86378 0.91021 0.84636 0.89401 0.88705 0.88151 0.87415 0.74158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.71 37.16 0.29 -0.75 16 2 C -0.12 -0.95 2.51 -91.77 -0.23 -1.18 16 3 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.52 6.41 6.87 -10.99 -0.08 6.34 16 5 O -0.52 -7.98 12.25 5.55 0.07 -7.92 16 6 N -0.67 -8.99 5.26 -9.88 -0.05 -9.04 16 7 C 0.18 3.11 6.29 -83.72 -0.53 2.59 16 8 C -0.20 -3.51 8.70 -39.34 -0.34 -3.85 16 9 C -0.07 -1.16 10.03 -39.63 -0.40 -1.55 16 10 C -0.20 -3.90 9.99 -39.36 -0.39 -4.30 16 11 C 0.17 3.90 6.65 -39.13 -0.26 3.64 16 12 O -0.22 -5.53 8.58 0.06 0.00 -5.53 16 13 C -0.39 -10.64 9.94 30.89 0.31 -10.34 16 14 H 0.10 2.86 5.43 -52.49 -0.29 2.57 16 15 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 16 N -0.88 -24.70 13.96 55.48 0.77 -23.93 16 17 Si 0.91 21.22 28.62 -169.99 -4.86 16.36 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 21 C -0.24 -5.00 9.08 -39.21 -0.36 -5.36 16 22 C 0.15 1.10 2.96 -67.01 -0.20 0.90 16 23 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 24 C -0.13 -0.58 6.21 -25.10 -0.16 -0.74 16 25 C -0.16 -1.01 6.06 -26.74 -0.16 -1.18 16 26 C 0.52 5.58 7.32 -10.86 -0.08 5.50 16 27 O -0.54 -8.34 18.03 5.55 0.10 -8.24 16 28 N -0.71 -7.05 4.89 -52.76 -0.26 -7.30 16 29 H 0.06 0.57 6.90 -51.93 -0.36 0.21 16 30 H 0.08 0.35 5.28 -51.93 -0.27 0.07 16 31 H 0.07 0.41 7.47 -51.93 -0.39 0.02 16 32 H 0.41 4.40 8.12 -40.82 -0.33 4.07 16 33 H 0.12 2.17 6.23 -52.49 -0.33 1.85 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.14 2.85 5.63 -52.49 -0.30 2.56 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.24 7.69 -51.93 -0.40 -0.16 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.54 6.07 -51.93 -0.32 0.23 16 42 H 0.42 4.77 8.01 -40.82 -0.33 4.45 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -33.55 342.47 -6.72 -40.26 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.97 Total: 8.80 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.68 Total: -8.62 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.46 Total: -40.27 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -6.72 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858556427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.293 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds