Wall clock time and date at job start Tue Mar 31 2020 12:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47316 * 239.99878 * 2 1 3 5 5 O 1.21286 * 119.99766 * 240.00238 * 4 2 1 6 6 N 1.34777 * 120.00379 * 60.00122 * 4 2 1 7 7 C 1.39917 * 120.00084 * 175.49513 * 6 4 2 8 8 C 1.38960 * 120.03694 * 35.14010 * 7 6 4 9 9 C 1.38159 * 120.06617 * 179.97438 * 8 7 6 10 10 C 1.38173 * 120.13897 * 359.72264 * 9 8 7 11 11 C 1.38910 * 120.06900 * 0.54951 * 10 9 8 12 12 O 1.35743 * 120.03357 * 179.71990 * 11 10 9 13 13 C 1.34834 * 117.00100 * 185.05107 * 12 11 10 14 14 H 1.07992 * 119.99839 * 354.67696 * 13 12 11 15 15 C 1.38653 * 119.99868 * 174.95317 * 13 12 11 16 16 N 1.31563 * 120.00013 * 179.72468 * 15 13 12 17 17 Si 1.86802 * 120.00268 * 359.72072 * 15 13 12 18 18 H 1.48497 * 109.46780 * 90.00144 * 17 15 13 19 19 H 1.48497 * 109.47250 * 209.99690 * 17 15 13 20 20 H 1.48495 * 109.46954 * 330.00543 * 17 15 13 21 21 C 1.38715 * 120.03197 * 215.11445 * 7 6 4 22 22 C 1.53001 * 109.46776 * 119.99652 * 2 1 3 23 23 H 1.08999 * 110.21355 * 178.07144 * 22 2 1 24 24 C 1.54481 * 110.24614 * 300.00071 * 22 2 1 25 25 C 1.54630 * 101.76325 * 93.58788 * 24 22 2 26 26 C 1.51279 * 104.19875 * 24.79474 * 25 24 22 27 27 O 1.21285 * 124.94554 * 163.70989 * 26 25 24 28 28 N 1.34421 * 110.11604 * 343.75135 * 26 25 24 29 29 H 1.09005 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47529 * 300.00263 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00268 * 1 2 3 32 32 H 0.97005 * 119.99272 * 355.49145 * 6 4 2 33 33 H 1.07995 * 119.97201 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.93154 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.96618 * 180.27680 * 10 9 8 36 36 H 0.96997 * 119.99799 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.07433 * 0.04252 * 21 7 6 38 38 H 1.09004 * 110.96852 * 211.70030 * 24 22 2 39 39 H 1.08997 * 110.97187 * 335.42919 * 24 22 2 40 40 H 1.08997 * 110.48956 * 143.47352 * 25 24 22 41 41 H 1.09000 * 110.48372 * 266.11659 * 25 24 22 42 42 H 0.96996 * 124.35297 * 179.59529 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7069 -0.2500 -2.4546 7 6 2.2491 -0.8519 -3.5953 8 6 2.4780 -2.2224 -3.6166 9 6 3.0129 -2.8175 -4.7429 10 6 3.3165 -2.0534 -5.8534 11 6 3.0953 -0.6821 -5.8364 12 8 3.3991 0.0687 -6.9257 13 6 3.2588 1.4044 -6.8070 14 1 2.8370 1.8251 -5.9062 15 6 3.6506 2.2374 -7.8439 16 7 3.5086 3.5404 -7.7303 17 14 4.3801 1.5097 -9.4020 18 1 3.2922 1.2259 -10.3721 19 1 5.3361 2.4764 -9.9993 20 1 5.0916 0.2485 -9.0732 21 6 2.5582 -0.0813 -4.7065 22 6 2.0399 -0.7212 1.2493 23 1 3.1293 -0.7582 1.2446 24 6 1.5348 -0.0069 2.5225 25 6 0.2432 -0.7971 2.8360 26 6 0.4698 -2.1482 2.1942 27 8 -0.1700 -3.1492 2.4380 28 7 1.4842 -2.0780 1.3149 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.0966 0.4986 -2.5446 33 1 2.2376 -2.8230 -2.7518 34 1 3.1903 -3.8827 -4.7569 35 1 3.7304 -2.5221 -6.7340 36 1 3.7823 4.1232 -8.4558 37 1 2.3815 0.9840 -4.6925 38 1 2.2561 -0.1005 3.3345 39 1 1.3124 1.0407 2.3199 40 1 0.1128 -0.9035 3.9129 41 1 -0.6223 -0.3046 2.3928 42 1 1.8073 -2.8277 0.7911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858556427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:34 Heat of formation + Delta-G solvation = -92.933417 kcal Electronic energy + Delta-G solvation = -26275.554968 eV Core-core repulsion = 22413.346347 eV Total energy + Delta-G solvation = -3862.208621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17925 -41.20592 -40.32514 -38.42293 -37.66272 -35.74228 -34.42476 -33.61034 -32.10941 -31.03663 -30.25527 -28.49588 -27.23154 -25.43779 -23.60549 -23.42064 -22.02159 -21.51412 -20.87053 -19.82773 -19.42906 -18.26324 -18.23855 -17.50268 -17.01008 -16.94334 -16.56484 -16.12317 -15.94678 -15.64876 -15.39347 -15.34914 -14.92667 -14.72833 -14.40407 -14.23685 -14.22710 -14.02019 -13.49860 -13.29047 -13.07807 -12.94608 -12.83859 -12.70916 -12.55949 -12.36183 -12.10178 -12.08091 -11.74879 -11.49455 -11.26089 -10.94736 -10.85635 -10.68504 -10.10872 -9.41295 -8.96231 -8.50043 -6.22602 0.35521 0.62960 1.33202 1.36340 1.52338 1.56166 1.62038 2.01500 2.28502 2.47289 2.76693 3.00702 3.16039 3.34898 3.52377 3.64208 3.84025 4.02885 4.10615 4.14522 4.29816 4.32114 4.39736 4.47866 4.59237 4.66572 4.71874 4.81654 4.84557 4.89665 4.97486 5.14267 5.15164 5.30816 5.32928 5.37959 5.47074 5.61670 5.74679 5.86222 5.89465 6.13216 6.19495 6.43008 6.84682 7.08312 7.26071 7.57769 8.60996 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002751 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.001665 B =10175.192187 C =10937.221528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 H 0.149 0.851 4 C 0.513 3.487 5 O -0.553 6.553 6 N -0.663 5.663 7 C 0.181 3.819 8 C -0.193 4.193 9 C -0.056 4.056 10 C -0.204 4.204 11 C 0.140 3.860 12 O -0.241 6.241 13 C -0.398 4.398 14 H 0.086 0.914 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.264 1.264 21 C -0.253 4.253 22 C 0.143 3.857 23 H 0.096 0.904 24 C -0.113 4.113 25 C -0.155 4.155 26 C 0.506 3.494 27 O -0.599 6.599 28 N -0.717 5.717 29 H 0.038 0.962 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.421 0.579 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.285 0.715 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -3.195 19.684 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 H 0.167 0.833 4 C 0.303 3.697 5 O -0.430 6.430 6 N -0.308 5.308 7 C 0.087 3.913 8 C -0.214 4.214 9 C -0.075 4.075 10 C -0.223 4.223 11 C 0.090 3.910 12 O -0.148 6.148 13 C -0.475 4.475 14 H 0.103 0.897 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.275 4.275 22 C 0.037 3.963 23 H 0.114 0.886 24 C -0.151 4.151 25 C -0.194 4.194 26 C 0.294 3.706 27 O -0.481 6.481 28 N -0.369 5.369 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.259 0.741 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.784 -4.120 19.711 20.697 hybrid contribution 0.180 0.011 -1.356 1.368 sum -4.603 -4.109 18.355 19.365 Atomic orbital electron populations 1.22042 0.91468 1.02242 1.05288 1.21950 0.98980 1.02408 0.90122 0.83314 1.21543 0.78933 0.84377 0.84869 1.90655 1.38688 1.26855 1.86832 1.43549 1.47163 1.36060 1.04050 1.17494 0.95903 0.91667 0.86247 1.21027 1.07580 0.92825 0.99919 1.20985 0.95340 1.00327 0.90823 1.20536 1.09930 0.90399 1.01448 1.19333 0.93629 0.91778 0.86262 1.83551 1.78652 1.19072 1.33530 1.20704 1.43062 0.78227 1.05468 0.89653 1.25206 0.96803 0.94722 1.01764 1.69711 1.47952 1.03195 1.35183 0.85285 0.78978 0.78683 0.78247 1.19119 1.19390 1.18810 1.20926 1.10986 1.00373 0.95202 1.21648 0.99367 0.80848 0.94391 0.88621 1.22750 0.95866 1.01204 0.95237 1.22583 1.01509 0.91772 1.03563 1.21758 0.78486 0.91285 0.79053 1.90720 1.52249 1.38469 1.66649 1.46526 1.35038 1.12972 1.42369 0.94292 0.87452 0.90852 0.74103 0.84907 0.82734 0.85073 0.90579 0.85975 0.88133 0.85357 0.86981 0.85664 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.71 71.98 0.55 -1.01 16 2 C -0.11 -1.36 2.51 -11.54 -0.03 -1.39 16 3 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.51 11.80 6.87 87.66 0.60 12.41 16 5 O -0.55 -16.26 12.25 -3.05 -0.04 -16.30 16 6 N -0.66 -17.07 5.26 -303.57 -1.60 -18.67 16 7 C 0.18 6.34 6.29 38.14 0.24 6.58 16 8 C -0.19 -6.58 8.70 22.42 0.19 -6.39 16 9 C -0.06 -1.85 10.03 22.24 0.22 -1.63 16 10 C -0.20 -7.82 9.99 22.42 0.22 -7.60 16 11 C 0.14 6.40 6.65 22.56 0.15 6.55 16 12 O -0.24 -12.70 8.58 -22.69 -0.19 -12.90 16 13 C -0.40 -22.54 9.94 67.92 0.68 -21.86 16 14 H 0.09 4.97 5.43 -2.91 -0.02 4.95 16 15 C 0.01 0.78 5.49 84.83 0.47 1.24 16 16 N -0.92 -52.98 13.96 21.61 0.30 -52.68 16 17 Si 0.97 44.28 28.62 68.60 1.96 46.24 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 21 C -0.25 -10.61 9.08 22.51 0.20 -10.41 16 22 C 0.14 1.72 2.96 45.44 0.13 1.85 16 23 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 24 C -0.11 -0.53 6.21 31.65 0.20 -0.33 16 25 C -0.15 -1.43 6.06 30.59 0.19 -1.24 16 26 C 0.51 10.48 7.32 87.90 0.64 11.12 16 27 O -0.60 -18.87 18.03 -3.05 -0.05 -18.92 16 28 N -0.72 -13.50 4.89 -439.42 -2.15 -15.65 16 29 H 0.04 0.62 6.90 -2.38 -0.02 0.60 16 30 H 0.11 0.45 5.28 -2.39 -0.01 0.44 16 31 H 0.07 0.68 7.47 -2.39 -0.02 0.66 16 32 H 0.42 8.49 8.12 -92.70 -0.75 7.73 16 33 H 0.13 4.40 6.23 -2.91 -0.02 4.38 16 34 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.28 15.08 8.31 -92.71 -0.77 14.30 16 37 H 0.12 5.40 5.63 -2.91 -0.02 5.38 16 38 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.13 -0.16 7.69 -2.39 -0.02 -0.18 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.13 0.74 6.07 -2.39 -0.01 0.72 16 42 H 0.41 9.37 8.01 -92.71 -0.74 8.62 16 Total: -1.00 -77.51 342.47 2.50 -75.01 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.40 Total: 25.97 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.67 Total: -12.11 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.44 Total: -86.99 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.29 Total: -48.12 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.24 kcal Total: -77.51 2.50 -75.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858556427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.922 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds