Wall clock time and date at job start Tue Mar 31 2020 12:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47107 * 2 1 4 4 C 1.50698 * 109.47554 * 120.00367 * 2 1 3 5 5 O 1.21290 * 120.00740 * 119.99685 * 4 2 1 6 6 N 1.34783 * 119.99726 * 300.00127 * 4 2 1 7 7 C 1.39920 * 120.00109 * 174.79162 * 6 4 2 8 8 C 1.38966 * 120.03456 * 326.12957 * 7 6 4 9 9 C 1.38159 * 120.06515 * 179.76321 * 8 7 6 10 10 C 1.38163 * 120.14097 * 0.51983 * 9 8 7 11 11 C 1.38915 * 120.07173 * 359.73774 * 10 9 8 12 12 O 1.35745 * 120.03596 * 179.97438 * 11 10 9 13 13 C 1.34839 * 117.00089 * 185.93341 * 12 11 10 14 14 H 1.07999 * 119.99529 * 5.39857 * 13 12 11 15 15 C 1.38654 * 119.99816 * 185.40784 * 13 12 11 16 16 N 1.31561 * 120.00195 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99719 * 179.97438 * 15 13 12 18 18 H 1.48511 * 109.47336 * 59.99510 * 17 15 13 19 19 H 1.48497 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47160 * 299.99677 * 17 15 13 21 21 C 1.38715 * 120.03792 * 146.40979 * 7 6 4 22 22 C 1.53003 * 109.47178 * 240.00128 * 2 1 3 23 23 H 1.08999 * 110.21237 * 299.30025 * 22 2 1 24 24 C 1.54478 * 110.24436 * 61.22776 * 22 2 1 25 25 C 1.54625 * 101.76700 * 93.67573 * 24 22 2 26 26 C 1.51277 * 104.19516 * 24.79540 * 25 24 22 27 27 O 1.21279 * 124.94529 * 163.71262 * 26 25 24 28 28 N 1.34427 * 110.11810 * 343.75167 * 26 25 24 29 29 H 1.09004 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47167 * 299.99634 * 1 2 3 31 31 H 1.08999 * 109.47536 * 59.99667 * 1 2 3 32 32 H 0.96993 * 120.00018 * 354.78318 * 6 4 2 33 33 H 1.07994 * 119.96496 * 0.02562 * 8 7 6 34 34 H 1.08004 * 119.93192 * 180.22852 * 9 8 7 35 35 H 1.07999 * 119.96716 * 179.71410 * 10 9 8 36 36 H 0.96996 * 119.99439 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.06638 * 359.97438 * 21 7 6 38 38 H 1.09003 * 110.96895 * 211.79504 * 24 22 2 39 39 H 1.09003 * 110.97166 * 335.51324 * 24 22 2 40 40 H 1.08993 * 110.48870 * 143.47539 * 25 24 22 41 41 H 1.09000 * 110.48452 * 266.12158 * 25 24 22 42 42 H 0.96991 * 124.34983 * 179.59408 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.0808 -0.9694 3.5949 8 6 2.1224 -2.3580 3.5587 9 6 2.4964 -3.0688 4.6829 10 6 2.8196 -2.4025 5.8492 11 6 2.7748 -1.0148 5.8935 12 8 3.0920 -0.3609 7.0400 13 6 2.9102 0.9751 7.0531 14 1 2.4470 1.4653 6.2096 15 6 3.3181 1.7195 8.1495 16 7 3.8821 1.1222 9.1771 17 14 3.0669 3.5704 8.1674 18 1 1.6184 3.8747 8.0459 19 1 3.5840 4.1278 9.4429 20 1 3.7980 4.1802 7.0277 21 6 2.4048 -0.2976 4.7644 22 6 2.0400 -0.7212 -1.2493 23 1 1.6935 -1.7547 -1.2553 24 6 1.5604 0.0108 -2.5223 25 6 2.7565 0.9449 -2.8184 26 6 3.9360 0.2542 -2.1699 27 8 5.1001 0.5036 -2.4011 28 7 3.5060 -0.6767 -1.3007 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.2133 0.5801 2.5450 33 1 1.8663 -2.8818 2.6497 34 1 2.5316 -4.1478 4.6512 35 1 3.1071 -2.9611 6.7277 36 1 4.1677 1.6431 9.9439 37 1 2.3692 0.7813 4.7963 38 1 1.4025 -0.6921 -3.3403 39 1 0.6555 0.5854 -2.3244 40 1 2.9120 1.0366 -3.8933 41 1 2.5950 1.9252 -2.3703 42 1 4.0896 -1.2458 -0.7751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858556429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:45 Heat of formation + Delta-G solvation = -74.685222 kcal Electronic energy + Delta-G solvation = -26177.268524 eV Core-core repulsion = 22315.851204 eV Total energy + Delta-G solvation = -3861.417320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.15025 -39.93489 -38.72427 -37.10917 -36.32551 -34.46678 -33.24800 -32.26413 -31.49102 -29.40804 -28.59646 -27.08399 -25.46624 -24.97768 -22.53669 -21.88456 -20.93108 -20.66627 -19.88103 -18.07767 -17.95646 -17.71118 -16.92995 -16.25576 -15.83055 -15.52978 -15.10474 -14.95309 -14.43184 -14.21468 -14.06842 -13.93952 -13.82446 -13.60492 -13.53156 -13.27672 -13.02881 -12.60394 -12.40739 -12.22018 -12.03774 -11.77947 -11.65413 -11.54615 -11.28799 -11.13873 -10.98690 -10.86173 -10.51027 -10.03428 -9.95483 -9.69269 -9.47351 -9.28847 -8.84903 -7.80248 -7.21656 -6.48834 -4.08976 1.87379 2.31099 2.42424 2.73649 3.06866 3.08663 3.10824 3.13228 3.20593 3.92210 4.00871 4.10136 4.15717 4.48155 4.53192 4.59287 4.74589 4.82212 4.94354 5.05754 5.16157 5.21913 5.23097 5.30806 5.42891 5.49361 5.60330 5.65502 5.75306 5.92079 6.00630 6.17578 6.21661 6.56931 6.65830 6.88717 6.91652 6.94876 7.05925 7.24851 7.36676 7.59155 7.74470 7.94751 8.10590 8.18992 8.96198 9.66011 10.69057 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.003075 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.656543 B = 9102.403970 C = 9925.740085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.518 3.482 5 O -0.521 6.521 6 N -0.666 5.666 7 C 0.179 3.821 8 C -0.205 4.205 9 C -0.063 4.063 10 C -0.200 4.200 11 C 0.168 3.832 12 O -0.175 6.175 13 C -0.394 4.394 14 H 0.089 0.911 15 C 0.040 3.960 16 N -0.861 5.861 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.270 1.270 21 C -0.256 4.256 22 C 0.151 3.849 23 H 0.098 0.902 24 C -0.131 4.131 25 C -0.158 4.158 26 C 0.514 3.486 27 O -0.539 6.539 28 N -0.716 5.716 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -0.402 -20.861 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 H 0.121 0.879 4 C 0.305 3.695 5 O -0.396 6.396 6 N -0.310 5.310 7 C 0.086 3.914 8 C -0.226 4.226 9 C -0.082 4.082 10 C -0.220 4.220 11 C 0.114 3.886 12 O -0.078 6.078 13 C -0.470 4.470 14 H 0.107 0.893 15 C -0.164 4.164 16 N -0.496 5.496 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.278 4.278 22 C 0.044 3.956 23 H 0.116 0.884 24 C -0.169 4.169 25 C -0.199 4.199 26 C 0.300 3.700 27 O -0.416 6.416 28 N -0.372 5.372 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.510 -0.912 -20.714 22.811 hybrid contribution -0.121 1.248 0.438 1.328 sum -9.631 0.337 -20.277 22.451 Atomic orbital electron populations 1.21851 0.91642 1.03546 1.03396 1.21838 0.98286 1.01559 0.93152 0.87931 1.20518 0.79869 0.84887 0.84256 1.90689 1.36264 1.26254 1.86431 1.43488 1.56347 1.26350 1.04807 1.17402 0.97892 0.90871 0.85254 1.20492 1.11049 0.91798 0.99258 1.20528 0.97223 0.98590 0.91859 1.20262 1.10849 0.91660 0.99188 1.19086 0.91797 0.91639 0.86089 1.84022 1.73152 1.21948 1.28685 1.21219 1.41128 0.79620 1.05039 0.89326 1.25282 0.96051 1.00350 0.94740 1.70025 1.37109 1.36494 1.05949 0.85801 0.78930 0.80612 0.78195 1.19500 1.20203 1.19549 1.20817 1.13342 1.00393 0.93221 1.21394 0.80530 1.00728 0.92921 0.88428 1.22776 0.98469 0.98825 0.96843 1.22367 0.93929 1.00309 1.03262 1.20956 0.89851 0.79797 0.79445 1.90764 1.19802 1.66210 1.64776 1.46384 1.07898 1.39270 1.43643 0.91397 0.91340 0.90635 0.75883 0.86435 0.86624 0.86362 0.91896 0.85311 0.89407 0.88481 0.87998 0.87814 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.87 37.15 0.33 -0.41 16 2 C -0.13 -0.97 2.50 -91.77 -0.23 -1.20 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.52 6.51 6.75 -10.98 -0.07 6.44 16 5 O -0.52 -8.22 12.45 5.55 0.07 -8.15 16 6 N -0.67 -9.07 5.19 -9.88 -0.05 -9.12 16 7 C 0.18 3.25 6.27 -83.72 -0.52 2.73 16 8 C -0.21 -3.75 8.65 -39.34 -0.34 -4.09 16 9 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 10 C -0.20 -4.23 9.99 -39.36 -0.39 -4.62 16 11 C 0.17 4.02 6.64 -39.13 -0.26 3.76 16 12 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 13 C -0.39 -10.79 9.44 30.89 0.29 -10.50 16 14 H 0.09 2.21 5.30 -52.49 -0.28 1.94 16 15 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 16 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 17 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.26 -5.41 9.04 -39.21 -0.35 -5.76 16 22 C 0.15 1.14 2.55 -67.01 -0.17 0.96 16 23 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 24 C -0.13 -0.60 6.52 -25.10 -0.16 -0.76 16 25 C -0.16 -1.06 6.86 -26.75 -0.18 -1.24 16 26 C 0.51 6.04 8.43 -10.86 -0.09 5.95 16 27 O -0.54 -8.93 18.03 5.56 0.10 -8.83 16 28 N -0.72 -7.73 5.38 -52.76 -0.28 -8.02 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.34 7.69 -51.93 -0.40 -0.06 16 31 H 0.07 0.21 6.17 -51.93 -0.32 -0.11 16 32 H 0.41 4.30 8.40 -40.82 -0.34 3.96 16 33 H 0.12 2.05 6.45 -52.49 -0.34 1.71 16 34 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 2.67 5.71 -52.49 -0.30 2.37 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.23 5.89 -51.93 -0.31 -0.07 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.42 5.31 7.93 -40.82 -0.32 4.98 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -35.39 350.17 -6.94 -42.32 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.12 Total: 9.94 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.66 Total: -9.30 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.42 Total: -41.41 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.17 Total: -21.90 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.39 -6.94 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858556429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds