Wall clock time and date at job start Tue Mar 31 2020 12:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.86796 * 2 1 4 4 O 1.43743 * 109.87663 * 238.84111 * 2 1 3 5 5 C 1.44386 * 106.97183 * 267.08808 * 4 2 1 6 6 C 1.54999 * 103.48805 * 319.93885 * 5 4 2 7 7 C 1.54099 * 109.88044 * 121.00389 * 2 1 3 8 8 H 1.09005 * 110.48725 * 358.58438 * 7 2 1 9 9 C 1.50698 * 110.48938 * 236.07002 * 7 2 1 10 10 O 1.21282 * 120.00046 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99788 * 179.97438 * 9 7 2 12 12 N 1.40100 * 119.99830 * 179.97438 * 11 9 7 13 13 C 1.34779 * 119.99830 * 179.97438 * 12 11 9 14 14 O 1.21604 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.47428 * 119.99746 * 179.97438 * 13 12 11 16 16 C 1.39228 * 120.28517 * 3.76754 * 15 13 12 17 17 C 1.38223 * 120.09406 * 179.97438 * 16 15 13 18 18 C 1.38825 * 120.67223 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.57589 * 359.74164 * 18 17 16 20 20 C 1.40710 * 119.87767 * 0.49496 * 19 18 17 21 21 C 1.40891 * 120.32687 * 179.78852 * 20 19 18 22 22 H 1.07996 * 119.99939 * 144.02547 * 21 20 19 23 23 C 1.40275 * 119.99865 * 324.02779 * 21 20 19 24 24 N 1.30628 * 120.00170 * 351.63242 * 23 21 20 25 25 Si 1.86802 * 119.99851 * 171.62895 * 23 21 20 26 26 H 1.48502 * 109.47063 * 180.02562 * 25 23 21 27 27 H 1.48508 * 109.47019 * 300.00145 * 25 23 21 28 28 H 1.48498 * 109.47249 * 59.99765 * 25 23 21 29 29 H 1.09005 * 109.46932 * 298.99441 * 1 2 3 30 30 H 1.08998 * 109.47131 * 58.98770 * 1 2 3 31 31 H 1.09000 * 109.47342 * 178.99767 * 1 2 3 32 32 H 1.09000 * 110.61720 * 78.43876 * 5 4 2 33 33 H 1.08998 * 110.61954 * 201.44059 * 5 4 2 34 34 H 1.08994 * 110.91088 * 278.82215 * 6 5 4 35 35 H 1.09005 * 110.90248 * 155.22229 * 6 5 4 36 36 H 0.97002 * 120.00061 * 0.02562 * 11 9 7 37 37 H 0.97002 * 120.00109 * 0.02562 * 12 11 9 38 38 H 1.07999 * 119.95352 * 0.02562 * 16 15 13 39 39 H 1.07998 * 119.65919 * 180.02562 * 17 16 15 40 40 H 1.08005 * 119.71393 * 179.97438 * 18 17 16 41 41 H 1.07997 * 120.06515 * 180.25584 * 19 18 17 42 42 H 0.96994 * 119.99572 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0187 -0.6994 -1.1568 5 6 2.2280 -2.0724 -0.7619 6 6 2.8325 -1.9515 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0884 1.8602 9 6 2.9744 0.1400 2.0410 10 8 3.2028 1.2708 1.6669 11 7 3.5429 -0.3236 3.1716 12 7 4.3990 0.5003 3.9140 13 6 4.9671 0.0368 5.0449 14 8 4.7369 -1.0966 5.4207 15 6 5.8683 0.9037 5.8258 16 6 6.0755 2.2264 5.4440 17 6 6.9209 3.0358 6.1793 18 6 7.5725 2.5444 7.3024 19 6 7.3841 1.2429 7.7073 20 6 6.5325 0.3967 6.9734 21 6 6.3363 -0.9388 7.3769 22 1 5.3677 -1.4017 7.2592 23 6 7.3990 -1.6672 7.9317 24 7 8.6064 -1.1686 7.9251 25 14 7.0877 -3.3502 8.6800 26 1 8.3646 -3.9072 9.1944 27 1 6.1177 -3.2234 9.7974 28 1 6.5330 -4.2578 7.6437 29 1 -0.3633 0.4982 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0180 32 1 1.2813 -2.6117 -0.7320 33 1 2.9294 -2.5632 -1.4366 34 1 3.9003 -1.7382 0.6122 35 1 2.6432 -2.8541 1.2413 36 1 3.3599 -1.2280 3.4710 37 1 4.5822 1.4045 3.6145 38 1 5.5742 2.6209 4.5725 39 1 7.0762 4.0609 5.8770 40 1 8.2300 3.1903 7.8653 41 1 7.8919 0.8704 8.5847 42 1 9.3412 -1.6725 8.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869069706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:26 Heat of formation + Delta-G solvation = -67.269121 kcal Electronic energy + Delta-G solvation = -26210.354101 eV Core-core repulsion = 22349.258367 eV Total energy + Delta-G solvation = -3861.095734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73824 -39.33091 -38.30439 -36.88351 -34.86754 -33.79228 -32.94981 -31.60846 -31.04095 -29.94299 -29.10328 -26.98445 -25.48339 -23.05634 -22.35369 -21.83717 -20.99965 -20.76280 -19.60660 -18.01752 -17.56968 -17.13795 -16.47069 -16.30070 -15.55179 -15.32141 -15.09959 -14.77283 -14.32157 -14.23681 -14.04487 -13.68871 -13.59373 -13.23397 -13.01702 -12.80194 -12.40515 -12.35304 -12.21797 -11.76213 -11.71299 -11.29457 -11.22319 -11.19644 -11.13692 -10.81202 -10.75988 -10.64573 -10.25772 -10.10910 -9.83663 -9.77378 -9.35459 -8.67307 -7.99779 -7.66634 -7.45071 -6.89652 -4.51170 2.15189 2.19653 2.50111 2.74378 3.03411 3.08380 3.17440 3.59844 3.89292 3.96695 4.07930 4.18939 4.45994 4.58457 4.72029 4.81607 4.88086 5.03338 5.14018 5.26405 5.27529 5.42191 5.49429 5.53610 5.68606 5.84319 5.86854 5.92666 5.97964 6.20850 6.44613 6.65100 6.83179 6.98516 7.01535 7.08888 7.14151 7.35419 7.50744 7.77415 7.86204 8.06168 8.14803 8.17470 8.55514 8.70241 8.77596 9.17188 10.05905 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.003239 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.290903 B = 8643.180497 C = 9964.291851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 H 0.120 0.880 4 O -0.368 6.368 5 C 0.047 3.953 6 C -0.149 4.149 7 C -0.132 4.132 8 H 0.115 0.885 9 C 0.516 3.484 10 O -0.544 6.544 11 N -0.512 5.512 12 N -0.544 5.544 13 C 0.568 3.432 14 O -0.540 6.540 15 C -0.257 4.257 16 C -0.056 4.056 17 C -0.239 4.239 18 C -0.093 4.093 19 C -0.144 4.144 20 C 0.151 3.849 21 C -0.421 4.421 22 H 0.110 0.890 23 C 0.069 3.931 24 N -0.790 5.790 25 Si 0.919 3.081 26 H -0.279 1.279 27 H -0.262 1.262 28 H -0.262 1.262 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.429 0.571 37 H 0.424 0.576 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -2.237 -10.051 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.286 6.286 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.155 4.155 8 H 0.133 0.867 9 C 0.301 3.699 10 O -0.421 6.421 11 N -0.256 5.256 12 N -0.296 5.296 13 C 0.363 3.637 14 O -0.417 6.417 15 C -0.263 4.263 16 C -0.075 4.075 17 C -0.258 4.258 18 C -0.112 4.112 19 C -0.163 4.163 20 C 0.146 3.854 21 C -0.449 4.449 22 H 0.127 0.873 23 C -0.150 4.150 24 N -0.415 5.415 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.187 1.187 28 H -0.187 1.187 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.270 0.730 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.263 -2.234 -10.161 14.614 hybrid contribution 0.064 -0.816 0.530 0.975 sum -10.199 -3.050 -9.632 14.356 Atomic orbital electron populations 1.22284 0.95034 1.02432 1.02935 1.22787 0.93866 0.98393 0.82561 0.86288 1.88953 1.86111 1.20539 1.33031 1.23552 0.99899 0.84805 0.94708 1.23221 1.01248 0.97143 0.97110 1.22685 0.98537 0.96265 0.97972 0.86729 1.20368 0.81336 0.88298 0.79857 1.90696 1.62778 1.19498 1.69085 1.44696 1.43674 1.15091 1.22145 1.45389 1.46007 1.14354 1.23881 1.18703 0.79546 0.87533 0.77874 1.90665 1.62331 1.19636 1.69056 1.19123 1.11697 0.94432 1.01090 1.20695 0.96646 0.93178 0.97007 1.20321 1.05818 0.98842 1.00841 1.20841 0.98203 0.95829 0.96345 1.21351 1.02017 0.92029 1.00874 1.17424 0.87703 0.93042 0.87194 1.20260 0.98541 0.96213 1.29900 0.87261 1.26158 0.94507 1.00993 0.93319 1.69697 1.00389 1.38453 1.32957 0.86178 0.78473 0.81020 0.80021 1.20405 1.18675 1.18657 0.91314 0.91430 0.92319 0.91840 0.88589 0.89582 0.88892 0.72993 0.73323 0.89046 0.88753 0.88811 0.86415 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.30 37.16 0.35 -1.07 16 2 C 0.08 0.89 3.70 -26.16 -0.10 0.79 16 3 H 0.12 1.55 6.44 -51.93 -0.33 1.22 16 4 O -0.37 -4.30 11.19 -35.23 -0.39 -4.69 16 5 C 0.05 0.40 7.66 38.21 0.29 0.69 16 6 C -0.15 -1.31 6.69 -24.72 -0.17 -1.48 16 7 C -0.13 -1.33 3.07 -90.24 -0.28 -1.61 16 8 H 0.11 0.89 7.70 -51.93 -0.40 0.49 16 9 C 0.52 7.32 7.13 -10.99 -0.08 7.25 16 10 O -0.54 -9.41 15.10 5.56 0.08 -9.32 16 11 N -0.51 -7.89 6.25 31.22 0.20 -7.70 16 12 N -0.54 -10.09 6.21 30.43 0.19 -9.90 16 13 C 0.57 12.67 7.84 -12.52 -0.10 12.57 16 14 O -0.54 -13.13 13.36 5.27 0.07 -13.06 16 15 C -0.26 -6.09 5.92 -104.37 -0.62 -6.71 16 16 C -0.06 -1.19 9.52 -39.22 -0.37 -1.56 16 17 C -0.24 -4.97 10.03 -39.37 -0.39 -5.36 16 18 C -0.09 -2.03 10.01 -39.60 -0.40 -2.43 16 19 C -0.14 -3.51 8.62 -38.88 -0.34 -3.85 16 20 C 0.15 3.90 5.48 -106.54 -0.58 3.31 16 21 C -0.42 -11.08 7.75 -37.81 -0.29 -11.38 16 22 H 0.11 2.95 5.76 -52.49 -0.30 2.65 16 23 C 0.07 1.71 5.26 -17.30 -0.09 1.62 16 24 N -0.79 -19.79 11.23 55.56 0.62 -19.16 16 25 Si 0.92 18.82 29.57 -169.99 -5.03 13.79 16 26 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 28 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.43 6.05 8.00 -182.60 -1.46 4.59 16 37 H 0.42 7.57 6.05 -182.60 -1.10 6.46 16 38 H 0.09 1.65 6.41 -52.49 -0.34 1.32 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 41 H 0.12 2.93 6.71 -52.49 -0.35 2.58 16 42 H 0.28 6.48 8.29 -40.82 -0.34 6.15 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -30.36 350.36 -9.35 -39.71 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.21 Total: 14.26 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -3.16 Total: -9.21 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 1.01 Total: -36.76 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.24 Total: -27.08 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.36 -9.35 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.556 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds