Wall clock time and date at job start Tue Mar 31 2020 12:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.86796 * 2 1 4 4 O 1.43743 * 109.87663 * 238.84111 * 2 1 3 5 5 C 1.44386 * 106.97183 * 267.08808 * 4 2 1 6 6 C 1.54999 * 103.48805 * 319.93885 * 5 4 2 7 7 C 1.54099 * 109.88044 * 121.00389 * 2 1 3 8 8 H 1.09005 * 110.48725 * 358.58438 * 7 2 1 9 9 C 1.50698 * 110.48938 * 236.07002 * 7 2 1 10 10 O 1.21282 * 120.00046 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99788 * 179.97438 * 9 7 2 12 12 N 1.40100 * 119.99830 * 179.97438 * 11 9 7 13 13 C 1.34779 * 119.99830 * 179.97438 * 12 11 9 14 14 O 1.21604 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.47428 * 119.99746 * 179.97438 * 13 12 11 16 16 C 1.39228 * 120.28517 * 3.76754 * 15 13 12 17 17 C 1.38223 * 120.09406 * 179.97438 * 16 15 13 18 18 C 1.38825 * 120.67223 * 0.02562 * 17 16 15 19 19 C 1.37594 * 120.57589 * 359.74164 * 18 17 16 20 20 C 1.40710 * 119.87767 * 0.49496 * 19 18 17 21 21 C 1.40891 * 120.32687 * 179.78852 * 20 19 18 22 22 H 1.07996 * 119.99939 * 144.02547 * 21 20 19 23 23 C 1.40275 * 119.99865 * 324.02779 * 21 20 19 24 24 N 1.30628 * 120.00170 * 351.63242 * 23 21 20 25 25 Si 1.86802 * 119.99851 * 171.62895 * 23 21 20 26 26 H 1.48502 * 109.47063 * 180.02562 * 25 23 21 27 27 H 1.48508 * 109.47019 * 300.00145 * 25 23 21 28 28 H 1.48498 * 109.47249 * 59.99765 * 25 23 21 29 29 H 1.09005 * 109.46932 * 298.99441 * 1 2 3 30 30 H 1.08998 * 109.47131 * 58.98770 * 1 2 3 31 31 H 1.09000 * 109.47342 * 178.99767 * 1 2 3 32 32 H 1.09000 * 110.61720 * 78.43876 * 5 4 2 33 33 H 1.08998 * 110.61954 * 201.44059 * 5 4 2 34 34 H 1.08994 * 110.91088 * 278.82215 * 6 5 4 35 35 H 1.09005 * 110.90248 * 155.22229 * 6 5 4 36 36 H 0.97002 * 120.00061 * 0.02562 * 11 9 7 37 37 H 0.97002 * 120.00109 * 0.02562 * 12 11 9 38 38 H 1.07999 * 119.95352 * 0.02562 * 16 15 13 39 39 H 1.07998 * 119.65919 * 180.02562 * 17 16 15 40 40 H 1.08005 * 119.71393 * 179.97438 * 18 17 16 41 41 H 1.07997 * 120.06515 * 180.25584 * 19 18 17 42 42 H 0.96994 * 119.99572 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0187 -0.6994 -1.1568 5 6 2.2280 -2.0724 -0.7619 6 6 2.8325 -1.9515 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0884 1.8602 9 6 2.9744 0.1400 2.0410 10 8 3.2028 1.2708 1.6669 11 7 3.5429 -0.3236 3.1716 12 7 4.3990 0.5003 3.9140 13 6 4.9671 0.0368 5.0449 14 8 4.7369 -1.0966 5.4207 15 6 5.8683 0.9037 5.8258 16 6 6.0755 2.2264 5.4440 17 6 6.9209 3.0358 6.1793 18 6 7.5725 2.5444 7.3024 19 6 7.3841 1.2429 7.7073 20 6 6.5325 0.3967 6.9734 21 6 6.3363 -0.9388 7.3769 22 1 5.3677 -1.4017 7.2592 23 6 7.3990 -1.6672 7.9317 24 7 8.6064 -1.1686 7.9251 25 14 7.0877 -3.3502 8.6800 26 1 8.3646 -3.9072 9.1944 27 1 6.1177 -3.2234 9.7974 28 1 6.5330 -4.2578 7.6437 29 1 -0.3633 0.4982 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0180 32 1 1.2813 -2.6117 -0.7320 33 1 2.9294 -2.5632 -1.4366 34 1 3.9003 -1.7382 0.6122 35 1 2.6432 -2.8541 1.2413 36 1 3.3599 -1.2280 3.4710 37 1 4.5822 1.4045 3.6145 38 1 5.5742 2.6209 4.5725 39 1 7.0762 4.0609 5.8770 40 1 8.2300 3.1903 7.8653 41 1 7.8919 0.8704 8.5847 42 1 9.3412 -1.6725 8.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869069706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:25 Heat of formation + Delta-G solvation = -87.500285 kcal Electronic energy + Delta-G solvation = -26211.231390 eV Core-core repulsion = 22349.258367 eV Total energy + Delta-G solvation = -3861.973023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83111 -40.77489 -39.56882 -38.57536 -36.38462 -35.56340 -33.96052 -32.71033 -32.12837 -31.71892 -30.67177 -27.86197 -27.23419 -24.47992 -23.53238 -22.87316 -22.60065 -22.07337 -20.93410 -19.53346 -18.92196 -18.65640 -17.70432 -17.24140 -17.09655 -16.70480 -16.41284 -15.96805 -15.91958 -15.61324 -15.41582 -15.01307 -14.93600 -14.51179 -14.30470 -14.13221 -13.74017 -13.54839 -13.17721 -12.95941 -12.87572 -12.85540 -12.53350 -12.46635 -12.36097 -12.31391 -11.99518 -11.96691 -11.87541 -11.54720 -11.25281 -11.14474 -10.62715 -10.45251 -9.61915 -9.32562 -9.23640 -8.69569 -6.40906 0.40105 0.84766 0.99399 1.31578 1.36424 1.47699 1.52074 2.20640 2.22523 2.76681 2.83620 2.96953 3.38156 3.56568 3.66133 3.73993 4.05587 4.13760 4.22022 4.27268 4.30145 4.42929 4.55198 4.58360 4.66341 4.80231 4.81477 4.90332 4.99897 5.04397 5.14089 5.20631 5.27991 5.29209 5.53522 5.65143 5.70939 5.79203 5.92282 6.03833 6.07537 6.29433 6.55809 6.67731 6.85084 6.88470 6.94394 7.51305 8.28033 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.003239 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.290903 B = 8643.180497 C = 9964.291851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.089 0.911 4 O -0.394 6.394 5 C 0.044 3.956 6 C -0.147 4.147 7 C -0.123 4.123 8 H 0.148 0.852 9 C 0.519 3.481 10 O -0.575 6.575 11 N -0.510 5.510 12 N -0.536 5.536 13 C 0.567 3.433 14 O -0.565 6.565 15 C -0.275 4.275 16 C -0.057 4.057 17 C -0.233 4.233 18 C -0.089 4.089 19 C -0.171 4.171 20 C 0.122 3.878 21 C -0.459 4.459 22 H 0.092 0.908 23 C 0.032 3.968 24 N -0.820 5.820 25 Si 0.982 3.018 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.269 1.269 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.435 0.565 37 H 0.428 0.572 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 -2.491 -10.988 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.107 0.893 4 O -0.313 6.313 5 C -0.032 4.032 6 C -0.185 4.185 7 C -0.146 4.146 8 H 0.166 0.834 9 C 0.306 3.694 10 O -0.454 6.454 11 N -0.256 5.256 12 N -0.287 5.287 13 C 0.362 3.638 14 O -0.445 6.445 15 C -0.281 4.281 16 C -0.076 4.076 17 C -0.252 4.252 18 C -0.107 4.107 19 C -0.191 4.191 20 C 0.118 3.882 21 C -0.488 4.488 22 H 0.110 0.890 23 C -0.183 4.183 24 N -0.446 5.446 25 Si 0.803 3.197 26 H -0.187 1.187 27 H -0.181 1.181 28 H -0.194 1.194 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.278 0.722 37 H 0.272 0.728 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.475 -2.462 -11.123 16.170 hybrid contribution 0.399 -0.548 0.644 0.934 sum -11.077 -3.009 -10.479 15.542 Atomic orbital electron populations 1.22236 0.92850 1.03739 1.03249 1.22757 0.95486 0.96976 0.82656 0.89276 1.88925 1.86467 1.22320 1.33606 1.23779 1.01450 0.83551 0.94375 1.23268 0.99846 0.97508 0.97898 1.22800 0.98543 0.95778 0.97464 0.83440 1.21210 0.80798 0.88329 0.79036 1.90686 1.63814 1.21215 1.69666 1.44925 1.43343 1.15081 1.22268 1.45024 1.45732 1.14757 1.23164 1.18530 0.79591 0.87022 0.78665 1.90642 1.63303 1.20585 1.69947 1.19467 1.11759 0.95896 1.00993 1.21042 0.96497 0.92157 0.97867 1.20793 1.04274 1.00415 0.99715 1.21205 0.97849 0.95026 0.96637 1.21318 1.03256 0.93356 1.01125 1.17788 0.88753 0.93447 0.88180 1.20265 0.98596 0.97126 1.32792 0.88981 1.26855 0.93998 1.04197 0.93279 1.69730 1.00963 1.39961 1.33975 0.85257 0.78907 0.76578 0.78995 1.18693 1.18144 1.19365 0.90647 0.91562 0.90439 0.89265 0.87666 0.91595 0.86056 0.72198 0.72844 0.85956 0.85039 0.85911 0.87911 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.30 71.98 0.67 -1.67 16 2 C 0.08 1.62 3.70 30.97 0.11 1.73 16 3 H 0.09 2.34 6.44 -2.38 -0.02 2.32 16 4 O -0.39 -8.66 11.19 -148.98 -1.67 -10.33 16 5 C 0.04 0.63 7.66 72.67 0.56 1.19 16 6 C -0.15 -2.25 6.69 31.90 0.21 -2.03 16 7 C -0.12 -2.24 3.07 -10.55 -0.03 -2.27 16 8 H 0.15 1.75 7.70 -2.38 -0.02 1.73 16 9 C 0.52 14.20 7.13 87.66 0.63 14.82 16 10 O -0.58 -19.72 15.10 -3.04 -0.05 -19.77 16 11 N -0.51 -15.31 6.25 -173.53 -1.08 -16.39 16 12 N -0.54 -19.68 6.21 -175.88 -1.09 -20.78 16 13 C 0.57 25.62 7.84 86.66 0.68 26.30 16 14 O -0.57 -28.21 13.36 -4.04 -0.05 -28.27 16 15 C -0.27 -13.15 5.92 -19.70 -0.12 -13.27 16 16 C -0.06 -2.32 9.52 22.50 0.21 -2.10 16 17 C -0.23 -9.11 10.03 22.41 0.22 -8.89 16 18 C -0.09 -3.76 10.01 22.26 0.22 -3.53 16 19 C -0.17 -8.56 8.62 22.72 0.20 -8.37 16 20 C 0.12 6.52 5.48 -21.11 -0.12 6.40 16 21 C -0.46 -25.23 7.75 23.42 0.18 -25.05 16 22 H 0.09 5.23 5.76 -2.91 -0.02 5.21 16 23 C 0.03 1.64 5.26 85.37 0.45 2.09 16 24 N -0.82 -42.34 11.23 21.88 0.25 -42.10 16 25 Si 0.98 39.49 29.57 68.60 2.03 41.52 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 27 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.83 8.11 -2.39 -0.02 0.81 16 32 H 0.09 0.84 8.11 -2.39 -0.02 0.82 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.29 7.86 -2.39 -0.02 1.27 16 35 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.44 11.86 8.00 -213.32 -1.71 10.15 16 37 H 0.43 14.92 6.05 -213.32 -1.29 13.63 16 38 H 0.12 4.14 6.41 -2.91 -0.02 4.12 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.10 5.34 6.71 -2.91 -0.02 5.32 16 42 H 0.29 13.57 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -68.81 350.36 0.50 -68.31 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -1.91 Total: 42.43 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.08 Total: -14.63 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.93 Total: -79.27 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -1.77 Total: -58.36 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -68.81 0.50 -68.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.188 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds