Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.98870 * 2 1 4 4 O 1.43739 * 109.88077 * 238.92029 * 2 1 3 5 5 C 1.44379 * 106.97452 * 214.05941 * 4 2 1 6 6 C 1.55000 * 103.48838 * 40.06255 * 5 4 2 7 7 C 1.54104 * 109.87960 * 121.08142 * 2 1 3 8 8 H 1.08998 * 110.60032 * 240.18566 * 7 2 1 9 9 C 1.50701 * 110.48761 * 2.78190 * 7 2 1 10 10 O 1.21280 * 119.99842 * 85.35587 * 9 7 2 11 11 N 1.34768 * 119.99982 * 265.35790 * 9 7 2 12 12 N 1.40105 * 120.00135 * 179.97438 * 11 9 7 13 13 C 1.34768 * 120.00135 * 180.02562 * 12 11 9 14 14 O 1.21610 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.00309 * 180.02562 * 13 12 11 16 16 C 1.39226 * 120.27931 * 3.69764 * 15 13 12 17 17 C 1.38221 * 120.09194 * 180.02562 * 16 15 13 18 18 C 1.38818 * 120.67802 * 0.02562 * 17 16 15 19 19 C 1.37598 * 120.56773 * 359.69245 * 18 17 16 20 20 C 1.40707 * 119.88406 * 0.58570 * 19 18 17 21 21 C 1.40889 * 120.32918 * 179.72052 * 20 19 18 22 22 H 1.08006 * 119.99707 * 143.04161 * 21 20 19 23 23 C 1.40275 * 120.00169 * 322.76673 * 21 20 19 24 24 N 1.30629 * 119.99971 * 169.31556 * 23 21 20 25 25 Si 1.86799 * 119.99877 * 349.31547 * 23 21 20 26 26 H 1.48490 * 109.47270 * 91.85272 * 25 23 21 27 27 H 1.48503 * 109.46945 * 211.85648 * 25 23 21 28 28 H 1.48501 * 109.47147 * 331.85389 * 25 23 21 29 29 H 1.09004 * 109.47281 * 296.79962 * 1 2 3 30 30 H 1.09000 * 109.47332 * 56.79493 * 1 2 3 31 31 H 1.09002 * 109.46918 * 176.80383 * 1 2 3 32 32 H 1.08994 * 110.62031 * 281.56026 * 5 4 2 33 33 H 1.09004 * 110.75196 * 158.62022 * 5 4 2 34 34 H 1.09012 * 110.90277 * 204.77871 * 6 5 4 35 35 H 1.08998 * 110.91036 * 81.17516 * 6 5 4 36 36 H 0.97004 * 119.99956 * 0.02562 * 11 9 7 37 37 H 0.97001 * 119.99797 * 359.97438 * 12 11 9 38 38 H 1.07999 * 119.95362 * 359.97438 * 16 15 13 39 39 H 1.08000 * 119.65846 * 179.97438 * 17 16 15 40 40 H 1.07997 * 119.71748 * 179.97438 * 18 17 16 41 41 H 1.08004 * 120.05985 * 180.27568 * 19 18 17 42 42 H 0.96998 * 119.99547 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1577 5 6 3.2380 -1.3640 -0.7647 6 6 2.9195 -1.8914 0.6575 7 6 2.0540 -0.7482 1.2412 8 1 2.6615 -0.0871 1.8593 9 6 0.9074 -1.3104 2.0412 10 8 0.4388 -2.3911 1.7523 11 7 0.4027 -0.6124 3.0778 12 7 -0.6636 -1.1349 3.8213 13 6 -1.1686 -0.4367 4.8575 14 8 -0.6990 0.6471 5.1469 15 6 -2.2904 -0.9867 5.6402 16 6 -2.7822 -2.2595 5.3634 17 6 -3.8344 -2.7711 6.0993 18 6 -4.4131 -2.0277 7.1189 19 6 -3.9451 -0.7693 7.4197 20 6 -2.8790 -0.2228 6.6818 21 6 -2.3963 1.0673 6.9780 22 1 -1.3389 1.2767 6.9108 23 6 -3.2896 2.0811 7.3546 24 7 -2.8342 3.2099 7.8287 25 14 -5.1304 1.8169 7.1781 26 1 -5.6747 1.2637 8.4441 27 1 -5.7902 3.1135 6.8803 28 1 -5.3896 0.8635 6.0695 29 1 -0.3634 0.4634 0.9173 30 1 -0.3634 0.5628 -0.8598 31 1 -0.3633 -1.0261 -0.0573 32 1 4.0685 -0.6587 -0.7356 33 1 3.4613 -2.1904 -1.4395 34 1 3.8333 -2.0223 1.2374 35 1 2.3540 -2.8220 0.6098 36 1 0.7773 0.2521 3.3086 37 1 -1.0389 -1.9989 3.5897 38 1 -2.3415 -2.8474 4.5719 39 1 -4.2106 -3.7590 5.8783 40 1 -5.2348 -2.4425 7.6838 41 1 -4.3986 -0.1999 8.2176 42 1 -3.4520 3.9111 8.0887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869069707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = -60.196651 kcal Electronic energy + Delta-G solvation = -26538.219492 eV Core-core repulsion = 22677.430444 eV Total energy + Delta-G solvation = -3860.789048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.85478 -39.37135 -38.32732 -37.07067 -34.88719 -33.74865 -32.95608 -31.73335 -31.28716 -30.58074 -29.34105 -26.54423 -25.44951 -23.19307 -22.42928 -22.32042 -21.23340 -20.74883 -19.40387 -17.96374 -17.47064 -17.20204 -16.83872 -16.11416 -15.90658 -15.46495 -15.24687 -15.10025 -14.39405 -14.19504 -13.96894 -13.92989 -13.68083 -13.08074 -12.79350 -12.71518 -12.53581 -12.47608 -12.36514 -12.12290 -11.68010 -11.48922 -11.24040 -11.17989 -11.03405 -10.88245 -10.77071 -10.55848 -10.35544 -10.20022 -9.91316 -9.80529 -9.34715 -8.78098 -8.07624 -7.85471 -7.69312 -7.01164 -4.60360 1.92702 2.16913 2.44978 2.51416 3.02496 3.11042 3.22274 3.55995 3.80573 3.88392 4.05333 4.20152 4.46304 4.48537 4.71195 4.81397 4.93071 4.97609 5.13602 5.24535 5.26489 5.36872 5.45750 5.62600 5.67856 5.76184 5.79335 5.86145 5.94140 6.10184 6.22694 6.40831 6.61893 6.67757 6.92716 7.01194 7.04999 7.15509 7.28015 7.49734 7.63688 7.89710 8.06989 8.14469 8.37479 8.50485 8.72958 9.11510 9.95608 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003273 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.967418 B = 8552.940172 C = 9289.377389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.081 0.919 4 O -0.369 6.369 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.135 4.135 8 H 0.107 0.893 9 C 0.523 3.477 10 O -0.543 6.543 11 N -0.515 5.515 12 N -0.543 5.543 13 C 0.564 3.436 14 O -0.528 6.528 15 C -0.246 4.246 16 C -0.039 4.039 17 C -0.249 4.249 18 C -0.063 4.063 19 C -0.222 4.222 20 C 0.120 3.880 21 C -0.400 4.400 22 H 0.123 0.877 23 C 0.079 3.921 24 N -0.789 5.789 25 Si 0.906 3.094 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.242 1.242 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.429 0.571 37 H 0.423 0.577 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -5.475 -11.144 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.034 3.966 3 H 0.099 0.901 4 O -0.288 6.288 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.158 4.158 8 H 0.125 0.875 9 C 0.309 3.691 10 O -0.419 6.419 11 N -0.260 5.260 12 N -0.296 5.296 13 C 0.358 3.642 14 O -0.404 6.404 15 C -0.252 4.252 16 C -0.058 4.058 17 C -0.269 4.269 18 C -0.081 4.081 19 C -0.241 4.241 20 C 0.115 3.885 21 C -0.427 4.427 22 H 0.141 0.859 23 C -0.142 4.142 24 N -0.412 5.412 25 Si 0.732 3.268 26 H -0.192 1.192 27 H -0.214 1.214 28 H -0.166 1.166 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.271 0.729 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.558 -5.141 -11.217 14.469 hybrid contribution -0.692 0.060 0.313 0.762 sum 6.867 -5.080 -10.904 13.851 Atomic orbital electron populations 1.22164 0.93171 1.04177 1.03075 1.22602 0.95763 0.95183 0.83064 0.90087 1.88919 1.39687 1.67671 1.32491 1.23549 0.87655 0.96507 0.95118 1.23181 0.99779 0.98934 0.96058 1.22737 0.95802 0.99640 0.97639 0.87486 1.20220 0.84347 0.85225 0.79326 1.90699 1.61397 1.21392 1.68460 1.44843 1.29464 1.22704 1.28940 1.45314 1.29656 1.23615 1.30985 1.18619 0.83113 0.84411 0.78013 1.90748 1.60715 1.20771 1.68178 1.19061 1.04593 0.98317 1.03235 1.20823 0.94857 0.93707 0.96444 1.20319 1.02797 1.00715 1.03040 1.20787 0.97126 0.94408 0.95818 1.21193 1.03168 0.96689 1.03067 1.17483 0.89588 0.93345 0.88096 1.20170 0.98815 0.92156 1.31555 0.85917 1.26379 1.02097 0.94806 0.90882 1.69562 1.38913 1.05113 1.27626 0.86386 0.81199 0.78125 0.81083 1.19221 1.21421 1.16554 0.90758 0.91306 0.90685 0.91924 0.88568 0.89563 0.88281 0.72934 0.73406 0.88513 0.88218 0.88314 0.87479 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.41 37.16 0.31 -1.71 16 2 C 0.09 0.97 4.05 -26.15 -0.11 0.86 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 O -0.37 -4.26 11.19 -35.23 -0.39 -4.65 16 5 C 0.05 0.40 7.72 38.21 0.29 0.70 16 6 C -0.14 -1.29 6.65 -24.72 -0.16 -1.45 16 7 C -0.13 -1.37 3.43 -90.24 -0.31 -1.68 16 8 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.52 7.19 4.89 -10.99 -0.05 7.14 16 10 O -0.54 -9.01 14.82 5.56 0.08 -8.93 16 11 N -0.51 -7.71 5.80 31.22 0.18 -7.53 16 12 N -0.54 -9.65 6.21 30.43 0.19 -9.46 16 13 C 0.56 12.24 7.85 -12.52 -0.10 12.14 16 14 O -0.53 -12.95 13.38 5.27 0.07 -12.88 16 15 C -0.25 -5.55 5.92 -104.37 -0.62 -6.17 16 16 C -0.04 -0.77 9.52 -39.22 -0.37 -1.14 16 17 C -0.25 -4.77 10.03 -39.37 -0.39 -5.16 16 18 C -0.06 -1.26 10.01 -39.60 -0.40 -1.65 16 19 C -0.22 -5.04 7.06 -38.88 -0.27 -5.32 16 20 C 0.12 2.96 5.00 -106.54 -0.53 2.43 16 21 C -0.40 -10.75 8.27 -37.81 -0.31 -11.06 16 22 H 0.12 3.62 6.02 -52.48 -0.32 3.31 16 23 C 0.08 2.04 5.47 -17.30 -0.09 1.95 16 24 N -0.79 -20.64 13.92 55.56 0.77 -19.86 16 25 Si 0.91 19.99 24.55 -169.99 -4.17 15.82 16 26 H -0.27 -5.58 6.73 56.52 0.38 -5.20 16 27 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.24 -5.49 6.82 56.52 0.39 -5.11 16 29 H 0.07 0.92 7.14 -51.93 -0.37 0.55 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.05 7.01 -51.93 -0.36 0.69 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.10 1.11 6.91 -51.93 -0.36 0.75 16 36 H 0.43 6.00 8.00 -182.59 -1.46 4.54 16 37 H 0.42 7.11 6.05 -182.59 -1.10 6.01 16 38 H 0.10 1.60 6.41 -52.49 -0.34 1.26 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.11 2.39 5.12 -52.48 -0.27 2.12 16 42 H 0.29 6.77 8.29 -40.82 -0.34 6.43 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -30.63 340.74 -8.39 -39.02 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.13 Total: 13.48 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.12 Total: -10.13 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 1.14 Total: -36.86 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.24 Total: -26.47 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.63 -8.39 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds