Wall clock time and date at job start Tue Mar 31 2020 12:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.98870 * 2 1 4 4 O 1.43739 * 109.88077 * 238.92029 * 2 1 3 5 5 C 1.44379 * 106.97452 * 214.05941 * 4 2 1 6 6 C 1.55000 * 103.48838 * 40.06255 * 5 4 2 7 7 C 1.54104 * 109.87960 * 121.08142 * 2 1 3 8 8 H 1.08998 * 110.60032 * 240.18566 * 7 2 1 9 9 C 1.50701 * 110.48761 * 2.78190 * 7 2 1 10 10 O 1.21280 * 119.99842 * 85.35587 * 9 7 2 11 11 N 1.34768 * 119.99982 * 265.35790 * 9 7 2 12 12 N 1.40105 * 120.00135 * 179.97438 * 11 9 7 13 13 C 1.34768 * 120.00135 * 180.02562 * 12 11 9 14 14 O 1.21610 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.00309 * 180.02562 * 13 12 11 16 16 C 1.39226 * 120.27931 * 3.69764 * 15 13 12 17 17 C 1.38221 * 120.09194 * 180.02562 * 16 15 13 18 18 C 1.38818 * 120.67802 * 0.02562 * 17 16 15 19 19 C 1.37598 * 120.56773 * 359.69245 * 18 17 16 20 20 C 1.40707 * 119.88406 * 0.58570 * 19 18 17 21 21 C 1.40889 * 120.32918 * 179.72052 * 20 19 18 22 22 H 1.08006 * 119.99707 * 143.04161 * 21 20 19 23 23 C 1.40275 * 120.00169 * 322.76673 * 21 20 19 24 24 N 1.30629 * 119.99971 * 169.31556 * 23 21 20 25 25 Si 1.86799 * 119.99877 * 349.31547 * 23 21 20 26 26 H 1.48490 * 109.47270 * 91.85272 * 25 23 21 27 27 H 1.48503 * 109.46945 * 211.85648 * 25 23 21 28 28 H 1.48501 * 109.47147 * 331.85389 * 25 23 21 29 29 H 1.09004 * 109.47281 * 296.79962 * 1 2 3 30 30 H 1.09000 * 109.47332 * 56.79493 * 1 2 3 31 31 H 1.09002 * 109.46918 * 176.80383 * 1 2 3 32 32 H 1.08994 * 110.62031 * 281.56026 * 5 4 2 33 33 H 1.09004 * 110.75196 * 158.62022 * 5 4 2 34 34 H 1.09012 * 110.90277 * 204.77871 * 6 5 4 35 35 H 1.08998 * 110.91036 * 81.17516 * 6 5 4 36 36 H 0.97004 * 119.99956 * 0.02562 * 11 9 7 37 37 H 0.97001 * 119.99797 * 359.97438 * 12 11 9 38 38 H 1.07999 * 119.95362 * 359.97438 * 16 15 13 39 39 H 1.08000 * 119.65846 * 179.97438 * 17 16 15 40 40 H 1.07997 * 119.71748 * 179.97438 * 18 17 16 41 41 H 1.08004 * 120.05985 * 180.27568 * 19 18 17 42 42 H 0.96998 * 119.99547 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1577 5 6 3.2380 -1.3640 -0.7647 6 6 2.9195 -1.8914 0.6575 7 6 2.0540 -0.7482 1.2412 8 1 2.6615 -0.0871 1.8593 9 6 0.9074 -1.3104 2.0412 10 8 0.4388 -2.3911 1.7523 11 7 0.4027 -0.6124 3.0778 12 7 -0.6636 -1.1349 3.8213 13 6 -1.1686 -0.4367 4.8575 14 8 -0.6990 0.6471 5.1469 15 6 -2.2904 -0.9867 5.6402 16 6 -2.7822 -2.2595 5.3634 17 6 -3.8344 -2.7711 6.0993 18 6 -4.4131 -2.0277 7.1189 19 6 -3.9451 -0.7693 7.4197 20 6 -2.8790 -0.2228 6.6818 21 6 -2.3963 1.0673 6.9780 22 1 -1.3389 1.2767 6.9108 23 6 -3.2896 2.0811 7.3546 24 7 -2.8342 3.2099 7.8287 25 14 -5.1304 1.8169 7.1781 26 1 -5.6747 1.2637 8.4441 27 1 -5.7902 3.1135 6.8803 28 1 -5.3896 0.8635 6.0695 29 1 -0.3634 0.4634 0.9173 30 1 -0.3634 0.5628 -0.8598 31 1 -0.3633 -1.0261 -0.0573 32 1 4.0685 -0.6587 -0.7356 33 1 3.4613 -2.1904 -1.4395 34 1 3.8333 -2.0223 1.2374 35 1 2.3540 -2.8220 0.6098 36 1 0.7773 0.2521 3.3086 37 1 -1.0389 -1.9989 3.5897 38 1 -2.3415 -2.8474 4.5719 39 1 -4.2106 -3.7590 5.8783 40 1 -5.2348 -2.4425 7.6838 41 1 -4.3986 -0.1999 8.2176 42 1 -3.4520 3.9111 8.0887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869069707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:29 Heat of formation + Delta-G solvation = -82.627570 kcal Electronic energy + Delta-G solvation = -26539.192170 eV Core-core repulsion = 22677.430444 eV Total energy + Delta-G solvation = -3861.761726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93543 -40.84891 -39.53068 -38.68730 -36.38139 -35.52547 -33.98742 -32.78768 -32.48076 -32.33837 -30.83809 -27.53564 -27.10304 -24.58487 -23.70383 -23.16869 -22.86133 -22.11572 -20.73353 -19.57967 -18.85137 -18.61827 -17.86501 -17.40920 -17.07152 -16.74085 -16.35533 -16.30982 -15.92675 -15.82369 -15.48956 -15.38822 -15.03248 -14.53135 -14.38665 -13.97812 -13.84156 -13.49352 -13.41660 -13.32587 -13.15645 -12.72071 -12.59078 -12.44346 -12.26337 -12.16524 -12.08124 -12.04205 -11.91589 -11.64885 -11.30968 -11.10779 -10.66722 -10.53013 -9.70396 -9.47950 -9.30553 -8.85124 -6.51552 0.23838 0.80246 0.85241 1.25430 1.30045 1.38687 1.47022 2.08764 2.15208 2.67164 2.80005 2.96859 3.34574 3.47774 3.53566 3.75623 4.01640 4.12164 4.17162 4.19892 4.25431 4.29071 4.41448 4.51207 4.54579 4.65919 4.78360 4.83368 4.88618 4.91194 4.95880 5.10889 5.13071 5.26223 5.36900 5.60280 5.64812 5.71562 5.86167 5.88953 5.96137 6.21759 6.43823 6.55839 6.72184 6.79377 6.91172 7.49878 8.18652 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.003273 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.967418 B = 8552.940172 C = 9289.377389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.108 0.892 4 O -0.393 6.393 5 C 0.047 3.953 6 C -0.140 4.140 7 C -0.132 4.132 8 H 0.140 0.860 9 C 0.527 3.473 10 O -0.570 6.570 11 N -0.515 5.515 12 N -0.533 5.533 13 C 0.562 3.438 14 O -0.564 6.564 15 C -0.261 4.261 16 C -0.042 4.042 17 C -0.229 4.229 18 C -0.057 4.057 19 C -0.243 4.243 20 C 0.106 3.894 21 C -0.446 4.446 22 H 0.077 0.923 23 C 0.041 3.959 24 N -0.841 5.841 25 Si 0.962 3.038 26 H -0.246 1.246 27 H -0.280 1.280 28 H -0.251 1.251 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.433 0.567 37 H 0.430 0.570 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -7.956 -12.437 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 H 0.125 0.875 4 O -0.313 6.313 5 C -0.029 4.029 6 C -0.178 4.178 7 C -0.155 4.155 8 H 0.158 0.842 9 C 0.315 3.685 10 O -0.448 6.448 11 N -0.262 5.262 12 N -0.283 5.283 13 C 0.356 3.644 14 O -0.442 6.442 15 C -0.267 4.267 16 C -0.060 4.060 17 C -0.248 4.248 18 C -0.075 4.075 19 C -0.262 4.262 20 C 0.102 3.898 21 C -0.474 4.474 22 H 0.095 0.905 23 C -0.174 4.174 24 N -0.467 5.467 25 Si 0.784 3.216 26 H -0.171 1.171 27 H -0.206 1.206 28 H -0.175 1.175 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.276 0.724 37 H 0.273 0.727 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.125 0.875 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.190 -7.663 -12.530 16.353 hybrid contribution -0.492 0.479 0.522 0.863 sum 6.698 -7.184 -12.007 15.513 Atomic orbital electron populations 1.22124 0.94892 1.02475 1.02978 1.22689 0.94486 0.96463 0.82936 0.87485 1.88893 1.41206 1.68159 1.33008 1.23773 0.87216 0.97335 0.94581 1.23205 1.00205 0.97263 0.97092 1.22904 0.94582 1.00631 0.97347 0.84213 1.20987 0.84479 0.84586 0.78435 1.90685 1.62402 1.22774 1.68986 1.45106 1.28761 1.23183 1.29103 1.44956 1.30018 1.23226 1.30114 1.18606 0.83079 0.84073 0.78687 1.90750 1.61855 1.22379 1.69246 1.19434 1.04724 0.99515 1.03012 1.21194 0.94965 0.92597 0.97274 1.20925 1.00948 1.01953 1.00960 1.21278 0.97514 0.92982 0.95774 1.21310 1.03285 0.98203 1.03392 1.17730 0.90642 0.92815 0.88635 1.19934 0.97214 0.94253 1.36034 0.90466 1.27041 1.05768 0.94244 0.90370 1.69608 1.40294 1.06259 1.30581 0.85556 0.76611 0.78073 0.81340 1.17061 1.20619 1.17505 0.91612 0.90571 0.93192 0.89288 0.87507 0.86936 0.90783 0.72420 0.72677 0.85220 0.83932 0.84311 0.87547 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.41 71.98 0.61 -3.33 16 2 C 0.09 1.77 4.05 30.97 0.13 1.89 16 3 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 4 O -0.39 -8.32 11.19 -148.98 -1.67 -9.99 16 5 C 0.05 0.65 7.72 72.67 0.56 1.21 16 6 C -0.14 -2.20 6.65 31.90 0.21 -1.99 16 7 C -0.13 -2.39 3.43 -10.55 -0.04 -2.42 16 8 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 9 C 0.53 14.00 4.89 87.66 0.43 14.43 16 10 O -0.57 -18.60 14.82 -3.03 -0.04 -18.65 16 11 N -0.51 -15.28 5.80 -173.54 -1.01 -16.28 16 12 N -0.53 -18.80 6.21 -175.88 -1.09 -19.89 16 13 C 0.56 24.95 7.85 86.67 0.68 25.63 16 14 O -0.56 -29.25 13.38 -4.06 -0.05 -29.30 16 15 C -0.26 -11.74 5.92 -19.70 -0.12 -11.86 16 16 C -0.04 -1.51 9.52 22.50 0.21 -1.29 16 17 C -0.23 -7.63 10.03 22.40 0.22 -7.41 16 18 C -0.06 -2.06 10.01 22.26 0.22 -1.83 16 19 C -0.24 -10.73 7.06 22.72 0.16 -10.57 16 20 C 0.11 5.34 5.00 -21.11 -0.11 5.23 16 21 C -0.45 -25.50 8.27 23.41 0.19 -25.31 16 22 H 0.08 5.00 6.02 -2.91 -0.02 4.98 16 23 C 0.04 2.21 5.47 85.37 0.47 2.68 16 24 N -0.84 -46.92 13.92 21.88 0.30 -46.61 16 25 Si 0.96 41.94 24.55 68.60 1.68 43.62 16 26 H -0.25 -9.76 6.73 99.48 0.67 -9.09 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.25 -11.12 6.82 99.48 0.68 -10.44 16 29 H 0.07 1.63 7.14 -2.38 -0.02 1.61 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.41 7.01 -2.39 -0.02 1.39 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.57 6.91 -2.39 -0.02 1.56 16 36 H 0.43 12.14 8.00 -213.31 -1.71 10.43 16 37 H 0.43 13.92 6.05 -213.32 -1.29 12.63 16 38 H 0.13 3.80 6.41 -2.91 -0.02 3.78 16 39 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.11 4.65 5.12 -2.91 -0.01 4.63 16 42 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16 Total: -1.00 -72.13 340.74 -0.01 -72.15 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -1.97 Total: 39.88 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 3.84 Total: -14.94 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.79 Total: -82.78 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -1.77 Total: -57.94 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.68 Total: 43.62 kcal Total: -72.13 -0.01 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds