Wall clock time and date at job start Tue Mar 31 2020 12:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99304 * 2 1 4 4 O 1.43747 * 109.88012 * 121.08475 * 2 1 3 5 5 C 1.44375 * 106.97806 * 145.93196 * 4 2 1 6 6 C 1.55224 * 103.56694 * 320.01729 * 5 4 2 7 7 C 1.54100 * 109.87856 * 238.91412 * 2 1 3 8 8 H 1.08999 * 110.48720 * 119.73221 * 7 2 1 9 9 C 1.50702 * 110.48545 * 357.22742 * 7 2 1 10 10 O 1.21285 * 119.99722 * 265.74570 * 9 7 2 11 11 N 1.34778 * 120.00311 * 85.74658 * 9 7 2 12 12 N 1.40103 * 119.99886 * 179.97438 * 11 9 7 13 13 C 1.34778 * 119.99461 * 180.02562 * 12 11 9 14 14 O 1.21599 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.47434 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.39234 * 120.28212 * 6.35633 * 15 13 12 17 17 C 1.38218 * 120.09050 * 180.28252 * 16 15 13 18 18 C 1.38832 * 120.67708 * 359.73981 * 17 16 15 19 19 C 1.37596 * 120.56624 * 359.97438 * 18 17 16 20 20 C 1.40704 * 119.88657 * 0.02562 * 19 18 17 21 21 C 1.40885 * 120.32691 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99878 * 216.05274 * 21 20 19 23 23 C 1.40266 * 120.00262 * 36.05254 * 21 20 19 24 24 N 1.30620 * 120.00122 * 356.04525 * 23 21 20 25 25 Si 1.86808 * 120.00174 * 176.04467 * 23 21 20 26 26 H 1.48501 * 109.47080 * 270.00240 * 25 23 21 27 27 H 1.48500 * 109.46978 * 29.99558 * 25 23 21 28 28 H 1.48500 * 109.47363 * 149.99822 * 25 23 21 29 29 H 1.08998 * 109.47115 * 185.71042 * 1 2 3 30 30 H 1.09001 * 109.46720 * 305.70763 * 1 2 3 31 31 H 1.08996 * 109.47199 * 65.70701 * 1 2 3 32 32 H 1.09010 * 110.61637 * 78.43803 * 5 4 2 33 33 H 1.08996 * 110.62655 * 201.28016 * 5 4 2 34 34 H 1.09000 * 110.89192 * 278.74592 * 6 5 4 35 35 H 1.09000 * 111.02645 * 155.07119 * 6 5 4 36 36 H 0.96994 * 119.99549 * 0.02562 * 11 9 7 37 37 H 0.96999 * 120.00059 * 0.02562 * 12 11 9 38 38 H 1.08004 * 119.95297 * 359.97438 * 16 15 13 39 39 H 1.08001 * 119.66440 * 179.71579 * 17 16 15 40 40 H 1.07997 * 119.71337 * 180.02562 * 18 17 16 41 41 H 1.08003 * 120.05531 * 180.02562 * 19 18 17 42 42 H 0.97008 * 120.00682 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2378 -1.3643 0.7647 6 6 2.9215 -1.8914 -0.6605 7 6 2.0540 -0.7482 -1.2411 8 1 2.6599 -0.0853 -1.8586 9 6 0.9073 -1.3104 -2.0412 10 8 0.5439 -2.4532 -1.8597 11 7 0.2855 -0.5432 -2.9584 12 7 -0.7802 -1.0660 -3.7026 13 6 -1.4016 -0.2990 -4.6202 14 8 -1.0371 0.8467 -4.8024 15 6 -2.5235 -0.8489 -5.4029 16 6 -3.0319 -2.1115 -5.1095 17 6 -4.0799 -2.6256 -5.8496 18 6 -4.6411 -1.8929 -6.8867 19 6 -4.1640 -0.6401 -7.1965 20 6 -3.0980 -0.0936 -6.4585 21 6 -2.6018 1.1881 -6.7680 22 1 -1.5448 1.3932 -6.6823 23 6 -3.4804 2.1979 -7.1875 24 7 -4.7463 1.9297 -7.3656 25 14 -2.8401 3.9263 -7.4915 26 1 -2.9283 4.7147 -6.2362 27 1 -1.4245 3.8588 -7.9351 28 1 -3.6583 4.5792 -8.5448 29 1 -0.3633 -1.0225 0.1023 30 1 -0.3633 0.5998 0.8345 31 1 -0.3633 0.4228 -0.9366 32 1 4.0685 -0.6590 0.7355 33 1 3.4599 -2.1891 1.4417 34 1 2.3571 -2.8228 -0.6141 35 1 3.8347 -2.0202 -1.2415 36 1 0.5763 0.3706 -3.1038 37 1 -1.0708 -1.9800 -3.5574 38 1 -2.6036 -2.6919 -4.3057 39 1 -4.4659 -3.6076 -5.6191 40 1 -5.4598 -2.3096 -7.4547 41 1 -4.6071 -0.0771 -8.0047 42 1 -5.3540 2.6281 -7.6553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869069709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:39 Heat of formation + Delta-G solvation = -61.614203 kcal Electronic energy + Delta-G solvation = -26512.320418 eV Core-core repulsion = 22651.469900 eV Total energy + Delta-G solvation = -3860.850518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84882 -39.28530 -38.25224 -36.87852 -34.86126 -33.79158 -32.98461 -31.72464 -31.06168 -29.91770 -29.03154 -26.54979 -25.49233 -23.19350 -22.42788 -22.15061 -20.96301 -20.73558 -19.35734 -17.91865 -17.31484 -17.11631 -16.84486 -15.99494 -15.74771 -15.40641 -15.23626 -15.08027 -14.32605 -14.20114 -13.90594 -13.86993 -13.19468 -13.06008 -12.78554 -12.56396 -12.53274 -12.39721 -12.32032 -11.74654 -11.49717 -11.23795 -11.21464 -11.17964 -11.11932 -10.79863 -10.71595 -10.62400 -10.25916 -10.16232 -9.84026 -9.77590 -9.41628 -8.68234 -7.98462 -7.65038 -7.42888 -6.82670 -4.50971 2.15244 2.20255 2.49249 2.75211 3.05313 3.12185 3.18473 3.55976 3.91237 3.97181 4.05707 4.19896 4.48124 4.60571 4.71516 4.82649 4.93014 4.99297 5.12894 5.24034 5.37271 5.46453 5.50230 5.63971 5.77599 5.86191 5.88903 5.92970 6.08863 6.22739 6.45744 6.61292 6.86528 7.00284 7.02842 7.10285 7.16260 7.38330 7.52445 7.82315 7.88376 8.06932 8.16378 8.18376 8.56859 8.71958 8.78517 9.15896 10.07894 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.003408 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.654946 B = 8213.553984 C = 9439.031676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 H 0.081 0.919 4 O -0.369 6.369 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.136 4.136 8 H 0.108 0.892 9 C 0.523 3.477 10 O -0.542 6.542 11 N -0.516 5.516 12 N -0.543 5.543 13 C 0.568 3.432 14 O -0.538 6.538 15 C -0.255 4.255 16 C -0.059 4.059 17 C -0.238 4.238 18 C -0.095 4.095 19 C -0.145 4.145 20 C 0.145 3.855 21 C -0.413 4.413 22 H 0.102 0.898 23 C 0.067 3.933 24 N -0.796 5.796 25 Si 0.925 3.075 26 H -0.268 1.268 27 H -0.260 1.260 28 H -0.278 1.278 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.428 0.572 37 H 0.424 0.576 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 -2.458 9.480 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.099 0.901 4 O -0.288 6.288 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.159 4.159 8 H 0.126 0.874 9 C 0.309 3.691 10 O -0.419 6.419 11 N -0.261 5.261 12 N -0.296 5.296 13 C 0.363 3.637 14 O -0.414 6.414 15 C -0.261 4.261 16 C -0.078 4.078 17 C -0.257 4.257 18 C -0.114 4.114 19 C -0.164 4.164 20 C 0.140 3.860 21 C -0.441 4.441 22 H 0.120 0.880 23 C -0.151 4.151 24 N -0.421 5.421 25 Si 0.749 3.251 26 H -0.193 1.193 27 H -0.184 1.184 28 H -0.204 1.204 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.270 0.730 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.965 -2.301 9.584 14.744 hybrid contribution 0.174 0.741 -0.269 0.807 sum 11.140 -1.560 9.315 14.605 Atomic orbital electron populations 1.22191 0.93130 1.03966 1.03369 1.22623 0.95745 0.95253 0.83164 0.90078 1.88923 1.39733 1.67646 1.32482 1.23599 0.87614 0.96490 0.95177 1.23209 0.99778 0.99068 0.95894 1.22751 0.95803 0.99704 0.97621 0.87360 1.20214 0.83681 0.86018 0.79223 1.90700 1.65977 1.17973 1.67241 1.44843 1.28641 1.16312 1.36290 1.45414 1.28638 1.16896 1.38640 1.18726 0.82264 0.85096 0.77611 1.90694 1.65832 1.17674 1.67244 1.19174 1.04350 0.98954 1.03632 1.20685 0.95951 0.93993 0.97200 1.20345 1.02500 1.00428 1.02446 1.20901 0.98271 0.95339 0.96905 1.21632 0.99568 0.93844 1.01358 1.17472 0.89623 0.91696 0.87183 1.20111 0.96841 0.93868 1.33307 0.88029 1.26132 0.94528 1.02281 0.92143 1.69676 1.04039 1.35424 1.33001 0.86034 0.79944 0.80448 0.78651 1.19313 1.18356 1.20377 0.91028 0.91255 0.90458 0.91975 0.88566 0.88116 0.89576 0.73025 0.73352 0.89071 0.88820 0.88825 0.85122 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 8.41 37.16 0.31 -1.73 16 2 C 0.09 0.95 4.06 -26.16 -0.11 0.84 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 O -0.37 -4.27 11.19 -35.23 -0.39 -4.66 16 5 C 0.05 0.40 7.72 38.34 0.30 0.70 16 6 C -0.14 -1.30 6.66 -24.60 -0.16 -1.47 16 7 C -0.14 -1.38 3.43 -90.24 -0.31 -1.69 16 8 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 9 C 0.52 7.30 5.02 -10.98 -0.06 7.24 16 10 O -0.54 -9.21 15.20 5.55 0.08 -9.12 16 11 N -0.52 -7.79 5.16 31.22 0.16 -7.63 16 12 N -0.54 -9.87 6.21 30.43 0.19 -9.68 16 13 C 0.57 12.52 7.83 -12.51 -0.10 12.42 16 14 O -0.54 -12.98 13.47 5.28 0.07 -12.91 16 15 C -0.25 -6.00 5.92 -104.36 -0.62 -6.61 16 16 C -0.06 -1.25 9.51 -39.22 -0.37 -1.62 16 17 C -0.24 -4.95 10.03 -39.37 -0.39 -5.34 16 18 C -0.10 -2.08 10.01 -39.60 -0.40 -2.48 16 19 C -0.14 -3.56 8.65 -38.89 -0.34 -3.89 16 20 C 0.14 3.73 5.55 -106.55 -0.59 3.14 16 21 C -0.41 -10.87 7.61 -37.82 -0.29 -11.15 16 22 H 0.10 2.74 6.01 -52.48 -0.32 2.42 16 23 C 0.07 1.66 5.42 -17.31 -0.09 1.57 16 24 N -0.80 -19.85 10.70 55.56 0.59 -19.25 16 25 Si 0.92 19.13 29.56 -169.99 -5.03 14.11 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.97 6.53 -51.93 -0.34 0.64 16 32 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.15 6.81 -51.93 -0.35 0.80 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.43 5.95 8.00 -182.60 -1.46 4.48 16 37 H 0.42 7.42 6.07 -182.60 -1.11 6.32 16 38 H 0.09 1.64 6.45 -52.48 -0.34 1.30 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.13 3.29 6.27 -52.48 -0.33 2.97 16 42 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -30.11 345.57 -9.48 -39.59 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -7.15 Total: 14.43 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.22 Total: -10.08 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.94 Total: -36.57 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.24 Total: -26.69 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.11 -9.48 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.023 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds