Wall clock time and date at job start Tue Mar 31 2020 12:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.99304 * 2 1 4 4 O 1.43747 * 109.88012 * 121.08475 * 2 1 3 5 5 C 1.44375 * 106.97806 * 145.93196 * 4 2 1 6 6 C 1.55224 * 103.56694 * 320.01729 * 5 4 2 7 7 C 1.54100 * 109.87856 * 238.91412 * 2 1 3 8 8 H 1.08999 * 110.48720 * 119.73221 * 7 2 1 9 9 C 1.50702 * 110.48545 * 357.22742 * 7 2 1 10 10 O 1.21285 * 119.99722 * 265.74570 * 9 7 2 11 11 N 1.34778 * 120.00311 * 85.74658 * 9 7 2 12 12 N 1.40103 * 119.99886 * 179.97438 * 11 9 7 13 13 C 1.34778 * 119.99461 * 180.02562 * 12 11 9 14 14 O 1.21599 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.47434 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.39234 * 120.28212 * 6.35633 * 15 13 12 17 17 C 1.38218 * 120.09050 * 180.28252 * 16 15 13 18 18 C 1.38832 * 120.67708 * 359.73981 * 17 16 15 19 19 C 1.37596 * 120.56624 * 359.97438 * 18 17 16 20 20 C 1.40704 * 119.88657 * 0.02562 * 19 18 17 21 21 C 1.40885 * 120.32691 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99878 * 216.05274 * 21 20 19 23 23 C 1.40266 * 120.00262 * 36.05254 * 21 20 19 24 24 N 1.30620 * 120.00122 * 356.04525 * 23 21 20 25 25 Si 1.86808 * 120.00174 * 176.04467 * 23 21 20 26 26 H 1.48501 * 109.47080 * 270.00240 * 25 23 21 27 27 H 1.48500 * 109.46978 * 29.99558 * 25 23 21 28 28 H 1.48500 * 109.47363 * 149.99822 * 25 23 21 29 29 H 1.08998 * 109.47115 * 185.71042 * 1 2 3 30 30 H 1.09001 * 109.46720 * 305.70763 * 1 2 3 31 31 H 1.08996 * 109.47199 * 65.70701 * 1 2 3 32 32 H 1.09010 * 110.61637 * 78.43803 * 5 4 2 33 33 H 1.08996 * 110.62655 * 201.28016 * 5 4 2 34 34 H 1.09000 * 110.89192 * 278.74592 * 6 5 4 35 35 H 1.09000 * 111.02645 * 155.07119 * 6 5 4 36 36 H 0.96994 * 119.99549 * 0.02562 * 11 9 7 37 37 H 0.96999 * 120.00059 * 0.02562 * 12 11 9 38 38 H 1.08004 * 119.95297 * 359.97438 * 16 15 13 39 39 H 1.08001 * 119.66440 * 179.71579 * 17 16 15 40 40 H 1.07997 * 119.71337 * 180.02562 * 18 17 16 41 41 H 1.08003 * 120.05531 * 180.02562 * 19 18 17 42 42 H 0.97008 * 120.00682 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2378 -1.3643 0.7647 6 6 2.9215 -1.8914 -0.6605 7 6 2.0540 -0.7482 -1.2411 8 1 2.6599 -0.0853 -1.8586 9 6 0.9073 -1.3104 -2.0412 10 8 0.5439 -2.4532 -1.8597 11 7 0.2855 -0.5432 -2.9584 12 7 -0.7802 -1.0660 -3.7026 13 6 -1.4016 -0.2990 -4.6202 14 8 -1.0371 0.8467 -4.8024 15 6 -2.5235 -0.8489 -5.4029 16 6 -3.0319 -2.1115 -5.1095 17 6 -4.0799 -2.6256 -5.8496 18 6 -4.6411 -1.8929 -6.8867 19 6 -4.1640 -0.6401 -7.1965 20 6 -3.0980 -0.0936 -6.4585 21 6 -2.6018 1.1881 -6.7680 22 1 -1.5448 1.3932 -6.6823 23 6 -3.4804 2.1979 -7.1875 24 7 -4.7463 1.9297 -7.3656 25 14 -2.8401 3.9263 -7.4915 26 1 -2.9283 4.7147 -6.2362 27 1 -1.4245 3.8588 -7.9351 28 1 -3.6583 4.5792 -8.5448 29 1 -0.3633 -1.0225 0.1023 30 1 -0.3633 0.5998 0.8345 31 1 -0.3633 0.4228 -0.9366 32 1 4.0685 -0.6590 0.7355 33 1 3.4599 -2.1891 1.4417 34 1 2.3571 -2.8228 -0.6141 35 1 3.8347 -2.0202 -1.2415 36 1 0.5763 0.3706 -3.1038 37 1 -1.0708 -1.9800 -3.5574 38 1 -2.6036 -2.6919 -4.3057 39 1 -4.4659 -3.6076 -5.6191 40 1 -5.4598 -2.3096 -7.4547 41 1 -4.6071 -0.0771 -8.0047 42 1 -5.3540 2.6281 -7.6553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869069709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:38 Heat of formation + Delta-G solvation = -81.546447 kcal Electronic energy + Delta-G solvation = -26513.184745 eV Core-core repulsion = 22651.469900 eV Total energy + Delta-G solvation = -3861.714845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92601 -40.75167 -39.47164 -38.55822 -36.35644 -35.56288 -34.01393 -32.67242 -32.38902 -31.69814 -30.62248 -27.54987 -27.17226 -24.58860 -23.54632 -23.15872 -22.69344 -22.10894 -20.70952 -19.49754 -18.72720 -18.48942 -17.83317 -17.24746 -17.07149 -16.73604 -16.32838 -16.27580 -15.94429 -15.78683 -15.42277 -15.02878 -14.93003 -14.50558 -14.16086 -13.95246 -13.54500 -13.45341 -13.42182 -13.13316 -12.94009 -12.83241 -12.56142 -12.38886 -12.33157 -12.14659 -12.00715 -11.91204 -11.89727 -11.57655 -11.35146 -11.19829 -10.64496 -10.45064 -9.60109 -9.29951 -9.20221 -8.62952 -6.40890 0.40530 0.87575 1.00168 1.33443 1.36229 1.49352 1.51289 2.21157 2.23828 2.78043 2.80411 2.98782 3.33587 3.56111 3.66446 3.78464 4.02506 4.16115 4.21886 4.26537 4.29155 4.31052 4.51711 4.55091 4.57330 4.80962 4.84248 4.89954 4.91703 5.07872 5.10604 5.15145 5.22521 5.31662 5.56729 5.68057 5.72950 5.80133 5.89238 6.08453 6.09331 6.29477 6.57540 6.69673 6.86984 6.90473 6.95761 7.52564 8.29532 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.003408 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.654946 B = 8213.553984 C = 9439.031676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 H 0.110 0.890 4 O -0.394 6.394 5 C 0.047 3.953 6 C -0.140 4.140 7 C -0.131 4.131 8 H 0.144 0.856 9 C 0.526 3.474 10 O -0.573 6.573 11 N -0.514 5.514 12 N -0.535 5.535 13 C 0.568 3.432 14 O -0.564 6.564 15 C -0.271 4.271 16 C -0.059 4.059 17 C -0.232 4.232 18 C -0.091 4.091 19 C -0.173 4.173 20 C 0.116 3.884 21 C -0.449 4.449 22 H 0.084 0.916 23 C 0.030 3.970 24 N -0.823 5.823 25 Si 0.985 3.015 26 H -0.271 1.271 27 H -0.262 1.262 28 H -0.260 1.260 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.434 0.566 37 H 0.428 0.572 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -2.807 10.612 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.128 0.872 4 O -0.314 6.314 5 C -0.029 4.029 6 C -0.178 4.178 7 C -0.154 4.154 8 H 0.162 0.838 9 C 0.314 3.686 10 O -0.451 6.451 11 N -0.261 5.261 12 N -0.285 5.285 13 C 0.362 3.638 14 O -0.443 6.443 15 C -0.277 4.277 16 C -0.078 4.078 17 C -0.251 4.251 18 C -0.109 4.109 19 C -0.193 4.193 20 C 0.112 3.888 21 C -0.478 4.478 22 H 0.102 0.898 23 C -0.185 4.185 24 N -0.450 5.450 25 Si 0.807 3.193 26 H -0.196 1.196 27 H -0.186 1.186 28 H -0.185 1.185 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.277 0.723 37 H 0.271 0.729 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.448 -2.689 10.734 16.655 hybrid contribution -0.265 0.616 -0.481 0.825 sum 12.183 -2.073 10.253 16.058 Atomic orbital electron populations 1.22158 0.94971 1.02242 1.03214 1.22717 0.94355 0.96629 0.82961 0.87202 1.88899 1.41253 1.68151 1.33052 1.23817 0.87218 0.97315 0.94560 1.23233 1.00215 0.97383 0.97014 1.22920 0.94455 1.00658 0.97354 0.83797 1.21031 0.83798 0.85434 0.78333 1.90688 1.66970 1.19523 1.67935 1.45079 1.27805 1.16864 1.36301 1.45019 1.29057 1.16526 1.37891 1.18519 0.82262 0.84880 0.78140 1.90671 1.66620 1.18811 1.68185 1.19505 1.04927 0.99852 1.03445 1.21030 0.95785 0.93204 0.97796 1.20809 1.01558 1.01592 1.01138 1.21248 0.98417 0.94230 0.97052 1.21582 1.00583 0.95258 1.01838 1.17827 0.90652 0.92191 0.88174 1.20100 0.96382 0.95175 1.36177 0.89812 1.26822 0.94645 1.05315 0.91704 1.69715 1.04724 1.36613 1.33920 0.85153 0.79344 0.76175 0.78675 1.19578 1.18641 1.18453 0.93669 0.90538 0.91292 0.89205 0.87628 0.90848 0.86945 0.72277 0.72877 0.85969 0.85134 0.86019 0.86696 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.41 71.98 0.61 -3.33 16 2 C 0.09 1.70 4.06 30.97 0.13 1.83 16 3 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 4 O -0.39 -8.26 11.19 -148.98 -1.67 -9.93 16 5 C 0.05 0.64 7.72 72.75 0.56 1.20 16 6 C -0.14 -2.23 6.66 31.97 0.21 -2.02 16 7 C -0.13 -2.33 3.43 -10.55 -0.04 -2.36 16 8 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 9 C 0.53 14.05 5.02 87.66 0.44 14.49 16 10 O -0.57 -19.16 15.20 -3.05 -0.05 -19.20 16 11 N -0.51 -15.10 5.16 -173.53 -0.89 -15.99 16 12 N -0.53 -19.24 6.21 -175.88 -1.09 -20.33 16 13 C 0.57 25.36 7.83 86.67 0.68 26.04 16 14 O -0.56 -27.94 13.47 -4.03 -0.05 -27.99 16 15 C -0.27 -12.90 5.92 -19.70 -0.12 -13.02 16 16 C -0.06 -2.41 9.51 22.50 0.21 -2.20 16 17 C -0.23 -9.09 10.03 22.41 0.22 -8.86 16 18 C -0.09 -3.88 10.01 22.26 0.22 -3.65 16 19 C -0.17 -8.71 8.65 22.72 0.20 -8.52 16 20 C 0.12 6.16 5.55 -21.11 -0.12 6.04 16 21 C -0.45 -24.73 7.61 23.41 0.18 -24.55 16 22 H 0.08 4.77 6.01 -2.91 -0.02 4.75 16 23 C 0.03 1.52 5.42 85.37 0.46 1.98 16 24 N -0.82 -42.40 10.70 21.88 0.23 -42.16 16 25 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 28 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 29 H 0.04 1.27 7.53 -2.39 -0.02 1.25 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.70 6.53 -2.39 -0.02 1.69 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.60 6.81 -2.39 -0.02 1.59 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.43 11.66 8.00 -213.33 -1.71 9.95 16 37 H 0.43 14.64 6.07 -213.32 -1.30 13.35 16 38 H 0.12 4.12 6.45 -2.91 -0.02 4.10 16 39 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.12 6.05 6.27 -2.91 -0.02 6.03 16 42 H 0.29 13.46 8.29 -92.70 -0.77 12.69 16 Total: -1.00 -68.36 345.57 0.44 -67.92 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.92 Total: 42.38 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.85 Total: -16.92 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -1.75 Total: -78.48 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -1.77 Total: -57.13 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -68.36 0.44 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869069709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.627 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds