Wall clock time and date at job start Tue Mar 31 2020 12:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46990 * 2 1 4 4 C 1.50703 * 109.47542 * 120.00300 * 2 1 3 5 5 H 1.07994 * 120.00226 * 120.00050 * 4 2 1 6 6 C 1.37876 * 119.99536 * 299.99985 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46986 * 89.99706 * 8 6 4 10 10 H 1.48500 * 109.47324 * 209.99984 * 8 6 4 11 11 H 1.48502 * 109.46923 * 330.00095 * 8 6 4 12 12 N 1.46899 * 109.47000 * 240.00316 * 2 1 3 13 13 C 1.46896 * 111.00265 * 84.99851 * 12 2 1 14 14 C 1.52996 * 109.47520 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47390 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.47278 * 179.97438 * 15 14 13 17 17 N 1.41591 * 114.00218 * 180.02562 * 16 15 14 18 18 C 1.34525 * 124.45909 * 269.97949 * 17 16 15 19 19 O 1.21448 * 125.71259 * 0.03487 * 18 17 16 20 20 C 1.47821 * 108.58246 * 180.02562 * 18 17 16 21 21 C 1.38564 * 134.29568 * 180.02562 * 20 18 17 22 22 C 1.38613 * 119.71574 * 180.20994 * 21 20 18 23 23 C 1.38220 * 120.45711 * 359.50655 * 22 21 20 24 24 C 1.38614 * 120.46568 * 0.47968 * 23 22 21 25 25 C 1.38568 * 119.71701 * 359.76831 * 24 23 22 26 26 C 1.34525 * 124.46432 * 89.99784 * 17 16 15 27 27 O 1.21446 * 125.70834 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47152 * 299.99644 * 1 2 3 29 29 H 1.08997 * 109.47830 * 60.00125 * 1 2 3 30 30 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00150 * 180.02562 * 7 6 4 32 32 H 1.00897 * 111.00224 * 321.04141 * 12 2 1 33 33 H 1.09005 * 109.47561 * 60.00160 * 13 12 2 34 34 H 1.09007 * 109.46934 * 300.00200 * 13 12 2 35 35 H 1.08999 * 109.47593 * 59.99398 * 14 13 12 36 36 H 1.09007 * 109.47011 * 299.99945 * 14 13 12 37 37 H 1.09002 * 109.47077 * 59.99975 * 15 14 13 38 38 H 1.08994 * 109.47234 * 299.99778 * 15 14 13 39 39 H 1.08002 * 120.13758 * 359.92268 * 21 20 18 40 40 H 1.07998 * 119.76663 * 179.72326 * 22 21 20 41 41 H 1.08001 * 119.76807 * 180.24655 * 23 22 21 42 42 H 1.07994 * 120.14144 * 179.74580 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0195 -0.6924 -1.1995 13 6 2.0823 0.2226 -2.3469 14 6 2.5948 -0.5330 -3.5745 15 6 2.6596 0.4199 -4.7698 16 8 3.1389 -0.2858 -5.9163 17 7 3.2373 0.5103 -7.0830 18 6 2.2485 0.6701 -7.9811 19 8 1.1468 0.1627 -7.9203 20 6 2.7273 1.5668 -9.0543 21 6 2.1635 2.0762 -10.2131 22 6 2.9081 2.9137 -11.0288 23 6 4.2044 3.2519 -10.6889 24 6 4.7814 2.7502 -9.5326 25 6 4.0508 1.9077 -8.7101 26 6 4.3319 1.2063 -7.4397 27 8 5.3764 1.2503 -6.8218 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7096 1.1617 3.4845 32 1 1.4495 -1.4979 -1.4101 33 1 2.7587 1.0463 -2.1183 34 1 1.0868 0.6164 -2.5525 35 1 1.9182 -1.3565 -3.8031 36 1 3.5902 -0.9271 -3.3692 37 1 3.3361 1.2436 -4.5415 38 1 1.6641 0.8136 -4.9750 39 1 1.1498 1.8179 -10.4819 40 1 2.4710 3.3076 -11.9345 41 1 4.7732 3.9086 -11.3305 42 1 5.7961 3.0146 -9.2742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878820254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:31 Heat of formation + Delta-G solvation = -7.143591 kcal Electronic energy + Delta-G solvation = -25149.812518 eV Core-core repulsion = 21291.324023 eV Total energy + Delta-G solvation = -3858.488495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53128 -39.12998 -39.03424 -37.65866 -36.38049 -35.54312 -33.33279 -31.76984 -31.65345 -30.57253 -27.92495 -25.64257 -25.18286 -24.69471 -23.67400 -22.70581 -21.25648 -20.78719 -20.18337 -18.57135 -18.30325 -17.28377 -17.12632 -16.26559 -15.99427 -15.65703 -15.61441 -15.10615 -14.96859 -14.67864 -14.63523 -14.41066 -14.16443 -13.44925 -13.41648 -13.27219 -12.94828 -12.49146 -12.26937 -12.02722 -11.66787 -11.52365 -11.17984 -11.03972 -10.91621 -10.85799 -10.66893 -10.46897 -10.37790 -10.20899 -10.11418 -9.88068 -9.85493 -9.83123 -9.01042 -8.35244 -7.27132 -5.97612 -4.00830 -0.51211 0.34530 0.85759 1.47309 2.45787 2.98235 3.07058 3.34486 3.40284 3.44833 3.57373 3.82318 3.96398 4.25907 4.43952 4.45320 4.57430 4.75139 4.86361 4.88797 5.13185 5.14869 5.28291 5.33436 5.34721 5.46521 5.55787 5.56802 5.80820 5.88858 5.93059 6.06553 6.07236 6.35534 6.44969 6.68703 6.73500 6.83915 7.08769 7.33738 7.35566 7.73709 7.88757 8.26694 8.51825 8.60620 9.06370 9.64451 11.09536 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.001999 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.351452 B =14000.852686 C =14319.503274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.067 3.933 14 C -0.106 4.106 15 C 0.023 3.977 16 O -0.103 6.103 17 N -0.448 5.448 18 C 0.573 3.427 19 O -0.446 6.446 20 C -0.131 4.131 21 C -0.041 4.041 22 C -0.094 4.094 23 C -0.094 4.094 24 C -0.041 4.041 25 C -0.131 4.131 26 C 0.572 3.428 27 O -0.443 6.443 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.327 0.673 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 6.951 -31.515 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.064 4.064 14 C -0.146 4.146 15 C -0.054 4.054 16 O -0.104 6.104 17 N -0.234 5.234 18 C 0.362 3.638 19 O -0.315 6.315 20 C -0.135 4.135 21 C -0.060 4.060 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.060 4.060 25 C -0.134 4.134 26 C 0.361 3.639 27 O -0.312 6.312 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.785 6.632 -30.733 31.802 hybrid contribution -0.834 -0.234 0.996 1.320 sum 3.951 6.398 -29.737 30.673 Atomic orbital electron populations 1.22434 1.00636 0.99283 1.00512 1.19191 0.89660 0.94442 0.86388 0.94863 1.21157 1.30162 1.12472 0.89545 0.91867 1.24967 0.95341 0.95256 0.99105 1.69885 1.37342 1.23243 1.23348 0.86481 0.78421 0.80031 0.82343 1.20753 1.21427 1.19912 1.60778 1.58272 1.09026 1.03198 1.21741 0.98501 0.96065 0.90081 1.21520 1.04138 0.97907 0.91014 1.23421 0.99501 0.97749 0.84769 1.90847 1.88567 1.21438 1.09582 1.48222 1.15092 1.45050 1.15058 1.18578 0.83493 0.80186 0.81527 1.90845 1.19289 1.46415 1.74907 1.20371 0.95494 1.00537 0.97106 1.20843 1.00595 0.93843 0.90730 1.21506 0.94159 0.96091 0.99430 1.21509 0.95357 0.98462 0.95832 1.20848 1.00175 0.92847 0.92124 1.20372 0.95775 1.01319 0.95983 1.18575 0.82569 0.77672 0.85038 1.90854 1.24851 1.58478 1.57011 0.89189 0.97651 0.95251 0.93072 0.85675 0.91380 0.96059 0.90864 0.89640 0.91286 0.91567 0.83659 0.83745 0.83736 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.15 0.33 -3.80 16 2 C 0.21 5.38 2.57 -68.87 -0.18 5.21 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.52 16 4 C -0.49 -13.92 8.84 -34.44 -0.30 -14.22 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.72 6.23 -107.95 -0.67 -15.39 16 13 C 0.07 1.19 5.48 -3.83 -0.02 1.17 16 14 C -0.11 -1.61 5.84 -26.73 -0.16 -1.76 16 15 C 0.02 0.33 6.40 37.16 0.24 0.57 16 16 O -0.10 -1.54 11.36 -27.90 -0.32 -1.86 16 17 N -0.45 -5.92 3.16 -13.25 -0.04 -5.97 16 18 C 0.57 6.92 8.24 -12.45 -0.10 6.82 16 19 O -0.45 -6.49 18.02 -0.77 -0.01 -6.50 16 20 C -0.13 -1.11 6.40 -104.83 -0.67 -1.78 16 21 C -0.04 -0.21 10.09 -39.32 -0.40 -0.61 16 22 C -0.09 -0.26 10.04 -39.45 -0.40 -0.66 16 23 C -0.09 -0.26 10.03 -39.45 -0.40 -0.66 16 24 C -0.04 -0.22 10.09 -39.32 -0.40 -0.61 16 25 C -0.13 -1.11 6.41 -104.83 -0.67 -1.78 16 26 C 0.57 6.96 8.24 -12.46 -0.10 6.86 16 27 O -0.44 -6.54 18.02 -0.76 -0.01 -6.55 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 30 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.33 6.66 8.47 -39.29 -0.33 6.33 16 33 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 34 H 0.02 0.38 7.44 -51.92 -0.39 -0.01 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 -0.01 8.06 -52.49 -0.42 -0.43 16 41 H 0.14 -0.01 8.06 -52.49 -0.42 -0.43 16 42 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -33.55 366.23 -8.84 -42.39 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.59 Total: 0.80 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.32 Total: -3.85 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.09 Total: -46.74 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.34 Total: -14.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.55 -8.84 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.247 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds