Wall clock time and date at job start Tue Mar 31 2020 12:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46990 * 2 1 4 4 C 1.50703 * 109.47542 * 120.00300 * 2 1 3 5 5 H 1.07994 * 120.00226 * 120.00050 * 4 2 1 6 6 C 1.37876 * 119.99536 * 299.99985 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46986 * 89.99706 * 8 6 4 10 10 H 1.48500 * 109.47324 * 209.99984 * 8 6 4 11 11 H 1.48502 * 109.46923 * 330.00095 * 8 6 4 12 12 N 1.46899 * 109.47000 * 240.00316 * 2 1 3 13 13 C 1.46896 * 111.00265 * 84.99851 * 12 2 1 14 14 C 1.52996 * 109.47520 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47390 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.47278 * 179.97438 * 15 14 13 17 17 N 1.41591 * 114.00218 * 180.02562 * 16 15 14 18 18 C 1.34525 * 124.45909 * 269.97949 * 17 16 15 19 19 O 1.21448 * 125.71259 * 0.03487 * 18 17 16 20 20 C 1.47821 * 108.58246 * 180.02562 * 18 17 16 21 21 C 1.38564 * 134.29568 * 180.02562 * 20 18 17 22 22 C 1.38613 * 119.71574 * 180.20994 * 21 20 18 23 23 C 1.38220 * 120.45711 * 359.50655 * 22 21 20 24 24 C 1.38614 * 120.46568 * 0.47968 * 23 22 21 25 25 C 1.38568 * 119.71701 * 359.76831 * 24 23 22 26 26 C 1.34525 * 124.46432 * 89.99784 * 17 16 15 27 27 O 1.21446 * 125.70834 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47152 * 299.99644 * 1 2 3 29 29 H 1.08997 * 109.47830 * 60.00125 * 1 2 3 30 30 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00150 * 180.02562 * 7 6 4 32 32 H 1.00897 * 111.00224 * 321.04141 * 12 2 1 33 33 H 1.09005 * 109.47561 * 60.00160 * 13 12 2 34 34 H 1.09007 * 109.46934 * 300.00200 * 13 12 2 35 35 H 1.08999 * 109.47593 * 59.99398 * 14 13 12 36 36 H 1.09007 * 109.47011 * 299.99945 * 14 13 12 37 37 H 1.09002 * 109.47077 * 59.99975 * 15 14 13 38 38 H 1.08994 * 109.47234 * 299.99778 * 15 14 13 39 39 H 1.08002 * 120.13758 * 359.92268 * 21 20 18 40 40 H 1.07998 * 119.76663 * 179.72326 * 22 21 20 41 41 H 1.08001 * 119.76807 * 180.24655 * 23 22 21 42 42 H 1.07994 * 120.14144 * 179.74580 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0195 -0.6924 -1.1995 13 6 2.0823 0.2226 -2.3469 14 6 2.5948 -0.5330 -3.5745 15 6 2.6596 0.4199 -4.7698 16 8 3.1389 -0.2858 -5.9163 17 7 3.2373 0.5103 -7.0830 18 6 2.2485 0.6701 -7.9811 19 8 1.1468 0.1627 -7.9203 20 6 2.7273 1.5668 -9.0543 21 6 2.1635 2.0762 -10.2131 22 6 2.9081 2.9137 -11.0288 23 6 4.2044 3.2519 -10.6889 24 6 4.7814 2.7502 -9.5326 25 6 4.0508 1.9077 -8.7101 26 6 4.3319 1.2063 -7.4397 27 8 5.3764 1.2503 -6.8218 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7096 1.1617 3.4845 32 1 1.4495 -1.4979 -1.4101 33 1 2.7587 1.0463 -2.1183 34 1 1.0868 0.6164 -2.5525 35 1 1.9182 -1.3565 -3.8031 36 1 3.5902 -0.9271 -3.3692 37 1 3.3361 1.2436 -4.5415 38 1 1.6641 0.8136 -4.9750 39 1 1.1498 1.8179 -10.4819 40 1 2.4710 3.3076 -11.9345 41 1 4.7732 3.9086 -11.3305 42 1 5.7961 3.0146 -9.2742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:30 Heat of formation + Delta-G solvation = -29.110255 kcal Electronic energy + Delta-G solvation = -25150.765064 eV Core-core repulsion = 21291.324023 eV Total energy + Delta-G solvation = -3859.441041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.34325 -40.01889 -39.78042 -38.77345 -37.99237 -36.55047 -35.07255 -33.19862 -32.18239 -31.47953 -29.61246 -27.27691 -26.41901 -25.87698 -24.55240 -23.35050 -22.63583 -22.18913 -21.48900 -19.57388 -18.98251 -18.37478 -18.16324 -17.86992 -17.14106 -16.79225 -16.61253 -16.37843 -15.96875 -15.63238 -15.52138 -15.42415 -15.17566 -15.09330 -15.00790 -14.05719 -13.79591 -13.73180 -13.47103 -13.29364 -13.15868 -12.91954 -12.79713 -12.57491 -12.50145 -12.31725 -12.18091 -11.92634 -11.82997 -11.75461 -11.48943 -11.26237 -11.07811 -10.51026 -10.28389 -10.26766 -9.05639 -8.12159 -6.23451 -1.17102 -0.13760 -0.03109 0.83801 1.42278 1.42618 1.53857 1.56928 2.41921 2.44012 2.56388 2.59655 3.00121 3.16115 3.49533 3.50742 3.68726 3.87774 4.02358 4.04299 4.15546 4.16986 4.20455 4.35495 4.41166 4.53572 4.69795 4.78405 4.82068 4.82768 4.85238 4.97026 5.05129 5.14306 5.20857 5.21237 5.27477 5.37330 5.66605 5.67083 5.77829 5.85813 6.23016 6.37956 6.58161 6.76259 6.90535 7.46324 8.93598 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.001999 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.351452 B =14000.852686 C =14319.503274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.688 5.688 13 C 0.071 3.929 14 C -0.093 4.093 15 C 0.033 3.967 16 O -0.127 6.127 17 N -0.457 5.457 18 C 0.569 3.431 19 O -0.483 6.483 20 C -0.150 4.150 21 C -0.036 4.036 22 C -0.075 4.075 23 C -0.075 4.075 24 C -0.037 4.037 25 C -0.150 4.150 26 C 0.568 3.432 27 O -0.483 6.483 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.335 0.665 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.160 0.840 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 8.150 -34.574 35.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.318 5.318 13 C -0.059 4.059 14 C -0.132 4.132 15 C -0.045 4.045 16 O -0.130 6.130 17 N -0.243 5.243 18 C 0.362 3.638 19 O -0.355 6.355 20 C -0.154 4.154 21 C -0.055 4.055 22 C -0.093 4.093 23 C -0.093 4.093 24 C -0.055 4.055 25 C -0.154 4.154 26 C 0.361 3.639 27 O -0.355 6.355 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.178 0.822 40 H 0.204 0.796 41 H 0.204 0.796 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.077 7.833 -33.823 35.088 hybrid contribution -0.902 -0.505 1.743 2.027 sum 4.175 7.328 -32.080 33.170 Atomic orbital electron populations 1.22243 0.99789 0.99425 1.00175 1.18969 0.90223 0.92794 0.87452 0.97920 1.21446 1.30494 1.12555 0.91012 0.92665 1.25757 0.95459 0.95955 1.02007 1.70008 1.37968 1.24245 1.24061 0.85473 0.77917 0.79006 0.78690 1.20352 1.20755 1.19374 1.60620 1.58189 1.09649 1.03363 1.21702 0.98775 0.95562 0.89878 1.21293 1.03756 0.97881 0.90302 1.23236 0.99676 0.97156 0.84391 1.90760 1.88699 1.22917 1.10577 1.48608 1.16233 1.45105 1.14397 1.19285 0.82719 0.79924 0.81882 1.90806 1.20554 1.48222 1.75871 1.20198 0.95662 1.01659 0.97862 1.21229 1.01525 0.93285 0.89418 1.22034 0.93727 0.93839 0.99673 1.22032 0.95453 0.97249 0.94545 1.21228 1.00648 0.91455 0.92178 1.20195 0.96535 1.03562 0.95100 1.19305 0.81592 0.77038 0.85980 1.90814 1.26053 1.60067 1.58534 0.91799 0.95603 0.94741 0.92938 0.84789 0.92184 0.95478 0.90098 0.90209 0.91375 0.91167 0.82245 0.79585 0.79614 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.94 71.98 0.64 -7.08 16 2 C 0.21 11.17 2.57 44.17 0.11 11.28 16 3 H 0.00 0.16 7.80 -2.38 -0.02 0.15 16 4 C -0.52 -29.50 8.84 25.60 0.23 -29.27 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.36 5.30 84.65 0.45 0.81 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 8 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 N -0.69 -30.05 6.23 -495.46 -3.09 -33.14 16 13 C 0.07 2.58 5.48 86.30 0.47 3.06 16 14 C -0.09 -2.87 5.84 30.59 0.18 -2.69 16 15 C 0.03 0.97 6.40 71.98 0.46 1.43 16 16 O -0.13 -4.05 11.36 -23.05 -0.26 -4.32 16 17 N -0.46 -12.85 3.16 -432.75 -1.37 -14.22 16 18 C 0.57 14.41 8.24 86.82 0.72 15.12 16 19 O -0.48 -14.75 18.02 2.35 0.04 -14.70 16 20 C -0.15 -2.43 6.40 -20.00 -0.13 -2.56 16 21 C -0.04 -0.27 10.09 22.44 0.23 -0.04 16 22 C -0.08 -0.03 10.04 22.35 0.22 0.20 16 23 C -0.08 -0.03 10.03 22.36 0.22 0.19 16 24 C -0.04 -0.28 10.09 22.44 0.23 -0.05 16 25 C -0.15 -2.46 6.41 -20.00 -0.13 -2.58 16 26 C 0.57 14.60 8.24 86.82 0.72 15.31 16 27 O -0.48 -15.14 18.02 2.36 0.04 -15.10 16 28 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 29 H 0.02 1.12 7.45 -2.39 -0.02 1.10 16 30 H 0.03 1.61 8.13 -2.38 -0.02 1.59 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.33 13.66 8.47 -89.70 -0.76 12.90 16 33 H 0.06 2.28 8.06 -2.38 -0.02 2.26 16 34 H 0.03 0.96 7.44 -2.38 -0.02 0.95 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.19 -1.35 8.06 -2.91 -0.02 -1.37 16 41 H 0.19 -1.31 8.06 -2.91 -0.02 -1.34 16 42 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -76.57 366.23 2.55 -74.03 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.29 Total: 11.23 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.62 Total: 3.11 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -4.21 Total: -101.26 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.18 Total: -34.12 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -76.57 2.55 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.916 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds