Wall clock time and date at job start Tue Mar 31 2020 12:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.79379 * 2 1 4 4 C 1.53438 * 109.84247 * 239.16026 * 2 1 3 5 5 C 1.52850 * 108.84944 * 177.20210 * 4 2 1 6 6 H 1.09002 * 109.13263 * 291.13496 * 5 4 2 7 7 C 1.50700 * 109.30349 * 171.65300 * 5 4 2 8 8 O 1.20829 * 119.99926 * 358.96357 * 7 5 4 9 9 O 1.34231 * 120.00009 * 178.96750 * 7 5 4 10 10 C 1.45194 * 116.99971 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47399 * 179.97438 * 10 9 7 12 12 O 1.21297 * 119.99943 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00454 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00130 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00049 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99753 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99709 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99702 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99882 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99875 * 18 16 14 22 22 C 1.50596 * 110.48509 * 51.33915 * 5 4 2 23 23 C 1.38502 * 118.93302 * 159.37292 * 22 5 4 24 24 C 1.38119 * 120.30766 * 179.83661 * 23 22 5 25 25 C 1.38314 * 120.16166 * 0.02562 * 24 23 22 26 26 C 1.38020 * 119.91106 * 0.05465 * 25 24 23 27 27 C 1.38606 * 121.50130 * 339.34524 * 22 5 4 28 28 N 1.39918 * 120.84049 * 0.47738 * 27 22 5 29 29 H 1.08995 * 109.47283 * 299.20036 * 1 2 3 30 30 H 1.09000 * 109.47211 * 59.20669 * 1 2 3 31 31 H 1.08998 * 109.47180 * 179.19933 * 1 2 3 32 32 H 1.09000 * 109.57155 * 57.39285 * 4 2 1 33 33 H 1.09005 * 109.57469 * 297.01251 * 4 2 1 34 34 H 1.08998 * 109.47719 * 59.99350 * 10 9 7 35 35 H 1.09007 * 109.46752 * 299.99828 * 10 9 7 36 36 H 0.97006 * 119.99547 * 0.02562 * 13 11 10 37 37 H 0.97001 * 120.00308 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.84636 * 359.84800 * 23 22 5 39 39 H 1.07998 * 119.92059 * 180.02562 * 24 23 22 40 40 H 1.08004 * 120.04463 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.98365 * 180.02562 * 26 25 24 42 42 H 0.97003 * 120.53591 * 166.49800 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0508 -0.7399 -1.2392 5 6 3.5774 -0.6660 -1.2532 6 1 3.8836 0.3622 -1.4462 7 6 4.1094 -1.5574 -2.3456 8 8 3.3456 -2.1997 -3.0268 9 8 5.4317 -1.6381 -2.5617 10 6 5.8725 -2.5161 -3.6308 11 6 7.3760 -2.4774 -3.7249 12 8 8.0135 -1.7790 -2.9652 13 7 8.0126 -3.2197 -4.6524 14 6 9.3805 -3.1850 -4.7376 15 1 9.9480 -2.5624 -4.0617 16 6 10.0366 -3.9498 -5.6942 17 7 9.3461 -4.7069 -6.5169 18 14 11.9004 -3.9019 -5.8107 19 1 12.3102 -2.8264 -6.7492 20 1 12.3991 -5.2093 -6.3081 21 1 12.4736 -3.6319 -4.4677 22 6 4.1388 -1.1122 0.0711 23 6 5.4583 -1.5286 0.1334 24 6 6.0032 -1.9405 1.3339 25 6 5.2334 -1.9404 2.4830 26 6 3.9171 -1.5286 2.4295 27 6 3.3660 -1.1140 1.2217 28 7 2.0276 -0.7077 1.1875 29 1 -0.3633 0.5013 0.8970 30 1 -0.3634 0.5261 -0.8828 31 1 -0.3633 -1.0275 -0.0144 32 1 1.6541 -0.2694 -2.1389 33 1 1.7360 -1.7828 -1.2010 34 1 5.4411 -2.1839 -4.5751 35 1 5.5473 -3.5352 -3.4214 36 1 7.5028 -3.7786 -5.2597 37 1 8.3783 -4.7315 -6.4567 38 1 6.0640 -1.5309 -0.7607 39 1 7.0330 -2.2635 1.3754 40 1 5.6616 -2.2625 3.4207 41 1 3.3151 -1.5277 3.3261 42 1 1.4378 -0.8902 1.9357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884635908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:48 Heat of formation + Delta-G solvation = -95.056056 kcal Electronic energy + Delta-G solvation = -26400.886553 eV Core-core repulsion = 22538.585888 eV Total energy + Delta-G solvation = -3862.300665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05314 -39.62526 -38.27641 -37.06752 -36.12105 -34.35359 -33.73919 -31.98228 -31.25371 -29.66070 -28.48922 -27.66225 -25.32893 -24.15141 -22.81858 -22.28194 -21.04297 -19.97144 -19.65284 -18.08878 -17.76049 -17.37340 -16.77991 -16.58315 -16.32770 -15.72567 -15.52664 -14.76576 -14.52547 -14.39107 -13.99330 -13.84895 -13.77326 -13.43432 -13.32833 -13.01233 -12.69788 -12.55046 -12.30853 -12.28674 -12.12629 -11.71076 -11.39000 -11.29131 -11.05696 -11.00063 -10.82416 -10.46470 -10.39634 -10.24100 -10.07448 -9.93963 -9.63785 -8.72542 -8.57481 -8.13863 -7.49028 -6.82976 -3.97469 1.36634 1.63804 2.26749 2.63106 3.19868 3.25672 3.32991 3.52384 3.69377 3.87889 4.17922 4.28748 4.43716 4.54309 4.63707 4.84262 4.90417 4.97921 5.05487 5.12886 5.15435 5.25478 5.30012 5.43375 5.45444 5.50671 5.54286 5.59790 5.65565 5.68399 5.79153 5.83557 5.96781 6.15470 6.32311 6.51354 6.59781 6.77345 6.86472 7.25111 7.57694 7.67144 7.83096 7.99507 8.48117 8.67286 9.35326 9.71215 10.60029 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002943 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.153713 B = 9512.703896 C =10544.332489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.025 4.025 6 H 0.114 0.886 7 C 0.470 3.530 8 O -0.510 6.510 9 O -0.321 6.321 10 C 0.056 3.944 11 C 0.442 3.558 12 O -0.568 6.568 13 N -0.565 5.565 14 C -0.383 4.383 15 H 0.103 0.897 16 C -0.007 4.007 17 N -0.896 5.896 18 Si 1.095 2.905 19 H -0.283 1.283 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.164 4.164 23 C -0.068 4.068 24 C -0.169 4.169 25 C -0.073 4.073 26 C -0.198 4.198 27 C 0.225 3.775 28 N -0.750 5.750 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.378 0.622 37 H 0.263 0.737 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.113 7.659 14.304 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.044 4.044 6 H 0.132 0.868 7 C 0.312 3.688 8 O -0.398 6.398 9 O -0.235 6.235 10 C -0.021 4.021 11 C 0.227 3.773 12 O -0.451 6.451 13 N -0.204 5.204 14 C -0.512 4.512 15 H 0.121 0.879 16 C -0.210 4.210 17 N -0.535 5.535 18 Si 0.921 3.079 19 H -0.210 1.210 20 H -0.205 1.205 21 H -0.208 1.208 22 C -0.168 4.168 23 C -0.086 4.086 24 C -0.189 4.189 25 C -0.092 4.092 26 C -0.221 4.221 27 C 0.123 3.877 28 N -0.383 5.383 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.211 0.789 37 H 0.074 0.926 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.605 7.407 13.584 21.976 hybrid contribution -1.960 0.066 0.598 2.050 sum -17.565 7.474 14.183 23.781 Atomic orbital electron populations 1.21981 0.93636 1.02999 1.02883 1.21069 0.94281 0.95266 0.84741 0.91228 1.21874 0.92132 1.03139 0.98501 1.19737 0.95943 0.99251 0.89499 0.86840 1.23518 0.80975 0.80763 0.83512 1.90641 1.58416 1.43145 1.47641 1.86557 1.24158 1.61728 1.51087 1.22763 0.95792 0.94082 0.89509 1.19215 0.87074 0.85758 0.85289 1.90568 1.67062 1.43568 1.43938 1.41781 1.07926 1.40093 1.30593 1.20596 0.81039 1.29177 1.20396 0.87937 1.26586 1.08693 0.93265 0.92424 1.70870 1.08295 1.37530 1.36793 0.83076 0.71566 0.76859 0.76439 1.20983 1.20549 1.20772 1.18783 0.95401 1.10903 0.91729 1.21771 0.93606 0.93380 0.99829 1.20988 1.00580 1.04695 0.92590 1.20954 0.93285 0.96730 0.98203 1.20568 0.96517 1.09279 0.95701 1.17434 0.84216 0.93378 0.92651 1.44847 1.08157 1.65007 1.20331 0.91899 0.90727 0.91738 0.89656 0.89827 0.89611 0.89625 0.78887 0.92594 0.82868 0.85972 0.86218 0.86377 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.41 37.16 0.35 -0.53 16 2 C 0.15 1.21 3.53 -67.48 -0.24 0.97 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -1.22 4.11 -26.58 -0.11 -1.33 16 5 C -0.03 -0.32 2.77 -93.05 -0.26 -0.58 16 6 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 7 C 0.47 7.58 7.01 36.01 0.25 7.83 16 8 O -0.51 -8.96 15.58 -18.75 -0.29 -9.25 16 9 O -0.32 -5.90 6.79 -45.91 -0.31 -6.21 16 10 C 0.06 1.06 5.94 36.00 0.21 1.28 16 11 C 0.44 10.55 7.86 -10.99 -0.09 10.47 16 12 O -0.57 -15.56 16.08 -14.12 -0.23 -15.79 16 13 N -0.57 -14.16 5.28 -10.96 -0.06 -14.21 16 14 C -0.38 -10.64 9.68 -14.93 -0.14 -10.78 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 16 C -0.01 -0.18 5.50 -17.47 -0.10 -0.27 16 17 N -0.90 -24.85 13.68 55.50 0.76 -24.09 16 18 Si 1.10 23.95 29.92 -169.99 -5.09 18.86 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 C -0.16 -2.25 5.47 -104.44 -0.57 -2.82 16 23 C -0.07 -1.06 9.04 -39.53 -0.36 -1.41 16 24 C -0.17 -2.38 10.04 -39.60 -0.40 -2.77 16 25 C -0.07 -0.86 10.05 -39.63 -0.40 -1.26 16 26 C -0.20 -2.20 9.88 -39.35 -0.39 -2.59 16 27 C 0.23 2.67 6.48 -83.72 -0.54 2.13 16 28 N -0.75 -6.71 5.59 -51.65 -0.29 -7.00 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.00 7.81 -51.93 -0.41 0.60 16 34 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 35 H 0.09 1.50 8.13 -51.92 -0.42 1.08 16 36 H 0.38 8.70 6.73 -40.82 -0.27 8.42 16 37 H 0.26 7.00 6.78 -40.82 -0.28 6.72 16 38 H 0.15 2.77 5.14 -52.49 -0.27 2.50 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.40 2.74 8.60 -40.82 -0.35 2.39 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -33.46 352.51 -8.36 -41.82 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.40 Total: 12.23 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.77 Total: -1.68 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.41 Total: -45.30 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.83 Total: -31.25 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.46 -8.36 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884635908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.234 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds