Wall clock time and date at job start Tue Mar 31 2020 12:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.79379 * 2 1 4 4 C 1.53438 * 109.84247 * 239.16026 * 2 1 3 5 5 C 1.52850 * 108.84944 * 177.20210 * 4 2 1 6 6 H 1.09002 * 109.13263 * 291.13496 * 5 4 2 7 7 C 1.50700 * 109.30349 * 171.65300 * 5 4 2 8 8 O 1.20829 * 119.99926 * 358.96357 * 7 5 4 9 9 O 1.34231 * 120.00009 * 178.96750 * 7 5 4 10 10 C 1.45194 * 116.99971 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47399 * 179.97438 * 10 9 7 12 12 O 1.21297 * 119.99943 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00454 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00130 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00049 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99753 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99709 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99702 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99882 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99875 * 18 16 14 22 22 C 1.50596 * 110.48509 * 51.33915 * 5 4 2 23 23 C 1.38502 * 118.93302 * 159.37292 * 22 5 4 24 24 C 1.38119 * 120.30766 * 179.83661 * 23 22 5 25 25 C 1.38314 * 120.16166 * 0.02562 * 24 23 22 26 26 C 1.38020 * 119.91106 * 0.05465 * 25 24 23 27 27 C 1.38606 * 121.50130 * 339.34524 * 22 5 4 28 28 N 1.39918 * 120.84049 * 0.47738 * 27 22 5 29 29 H 1.08995 * 109.47283 * 299.20036 * 1 2 3 30 30 H 1.09000 * 109.47211 * 59.20669 * 1 2 3 31 31 H 1.08998 * 109.47180 * 179.19933 * 1 2 3 32 32 H 1.09000 * 109.57155 * 57.39285 * 4 2 1 33 33 H 1.09005 * 109.57469 * 297.01251 * 4 2 1 34 34 H 1.08998 * 109.47719 * 59.99350 * 10 9 7 35 35 H 1.09007 * 109.46752 * 299.99828 * 10 9 7 36 36 H 0.97006 * 119.99547 * 0.02562 * 13 11 10 37 37 H 0.97001 * 120.00308 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.84636 * 359.84800 * 23 22 5 39 39 H 1.07998 * 119.92059 * 180.02562 * 24 23 22 40 40 H 1.08004 * 120.04463 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.98365 * 180.02562 * 26 25 24 42 42 H 0.97003 * 120.53591 * 166.49800 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0508 -0.7399 -1.2392 5 6 3.5774 -0.6660 -1.2532 6 1 3.8836 0.3622 -1.4462 7 6 4.1094 -1.5574 -2.3456 8 8 3.3456 -2.1997 -3.0268 9 8 5.4317 -1.6381 -2.5617 10 6 5.8725 -2.5161 -3.6308 11 6 7.3760 -2.4774 -3.7249 12 8 8.0135 -1.7790 -2.9652 13 7 8.0126 -3.2197 -4.6524 14 6 9.3805 -3.1850 -4.7376 15 1 9.9480 -2.5624 -4.0617 16 6 10.0366 -3.9498 -5.6942 17 7 9.3461 -4.7069 -6.5169 18 14 11.9004 -3.9019 -5.8107 19 1 12.3102 -2.8264 -6.7492 20 1 12.3991 -5.2093 -6.3081 21 1 12.4736 -3.6319 -4.4677 22 6 4.1388 -1.1122 0.0711 23 6 5.4583 -1.5286 0.1334 24 6 6.0032 -1.9405 1.3339 25 6 5.2334 -1.9404 2.4830 26 6 3.9171 -1.5286 2.4295 27 6 3.3660 -1.1140 1.2217 28 7 2.0276 -0.7077 1.1875 29 1 -0.3633 0.5013 0.8970 30 1 -0.3634 0.5261 -0.8828 31 1 -0.3633 -1.0275 -0.0144 32 1 1.6541 -0.2694 -2.1389 33 1 1.7360 -1.7828 -1.2010 34 1 5.4411 -2.1839 -4.5751 35 1 5.5473 -3.5352 -3.4214 36 1 7.5028 -3.7786 -5.2597 37 1 8.3783 -4.7315 -6.4567 38 1 6.0640 -1.5309 -0.7607 39 1 7.0330 -2.2635 1.3754 40 1 5.6616 -2.2625 3.4207 41 1 3.3151 -1.5277 3.3261 42 1 1.4378 -0.8902 1.9357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884635908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:47 Heat of formation + Delta-G solvation = -115.738737 kcal Electronic energy + Delta-G solvation = -26401.783422 eV Core-core repulsion = 22538.585888 eV Total energy + Delta-G solvation = -3863.197534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24832 -40.81191 -40.12113 -38.09720 -37.39554 -36.42158 -34.71943 -33.31928 -32.75077 -30.61584 -30.13209 -28.41491 -26.74404 -25.77419 -23.76995 -23.15336 -22.27202 -21.82131 -20.56628 -20.11468 -19.04604 -18.62040 -18.34011 -17.71004 -17.22547 -17.16154 -16.72353 -16.65819 -15.79292 -15.56787 -15.41297 -15.09516 -14.90537 -14.75885 -14.47183 -14.07259 -13.90195 -13.78951 -13.42491 -13.36744 -13.21696 -12.84199 -12.79561 -12.43749 -12.30258 -12.08862 -11.97358 -11.91979 -11.84355 -11.75134 -11.63852 -11.59498 -10.93974 -10.59132 -10.21527 -9.72586 -8.99810 -8.34703 -6.15628 0.36523 0.63483 0.98305 1.28528 1.44336 1.55204 1.82968 1.84924 2.39669 2.47594 2.79298 2.94759 3.08882 3.37243 3.55152 3.61405 3.82374 3.93879 4.00418 4.00900 4.09234 4.16985 4.25369 4.35818 4.42016 4.56495 4.61030 4.68577 4.78394 4.92549 4.99329 5.11525 5.17182 5.22541 5.31278 5.36165 5.53687 5.56385 5.76165 5.86869 5.90683 6.35800 6.40125 6.50767 6.60998 6.91524 7.28750 7.71820 8.47177 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002943 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.153713 B = 9512.703896 C =10544.332489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.023 4.023 6 H 0.127 0.873 7 C 0.469 3.531 8 O -0.526 6.526 9 O -0.334 6.334 10 C 0.066 3.934 11 C 0.443 3.557 12 O -0.607 6.607 13 N -0.572 5.572 14 C -0.411 4.411 15 H 0.079 0.921 16 C -0.037 4.037 17 N -0.911 5.911 18 Si 1.137 2.863 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.180 4.180 23 C -0.094 4.094 24 C -0.192 4.192 25 C -0.069 4.069 26 C -0.194 4.194 27 C 0.227 3.773 28 N -0.740 5.740 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.387 0.613 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 8.309 15.663 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.042 4.042 6 H 0.144 0.856 7 C 0.313 3.687 8 O -0.415 6.415 9 O -0.250 6.250 10 C -0.011 4.011 11 C 0.230 3.770 12 O -0.493 6.493 13 N -0.212 5.212 14 C -0.540 4.540 15 H 0.097 0.903 16 C -0.236 4.236 17 N -0.550 5.550 18 Si 0.956 3.044 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.185 4.185 23 C -0.112 4.112 24 C -0.212 4.212 25 C -0.088 4.088 26 C -0.216 4.216 27 C 0.123 3.877 28 N -0.373 5.373 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.222 0.778 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.756 8.058 14.942 24.566 hybrid contribution -1.410 -0.111 0.244 1.435 sum -19.166 7.948 15.186 25.712 Atomic orbital electron populations 1.21950 0.91336 1.03243 1.04281 1.21193 0.95942 0.94993 0.83053 0.90320 1.21912 0.90039 1.02660 1.00570 1.19930 0.97497 0.98893 0.87856 0.85575 1.24250 0.79826 0.80772 0.83836 1.90622 1.58384 1.43995 1.48458 1.86623 1.25874 1.61660 1.50817 1.22537 0.92033 0.95484 0.91094 1.20012 0.89149 0.84097 0.83779 1.90541 1.68691 1.44891 1.45142 1.41794 1.07441 1.40677 1.31261 1.20597 0.82372 1.30034 1.20988 0.90307 1.27936 1.12283 0.92051 0.91356 1.70939 1.08498 1.38169 1.37361 0.82586 0.67047 0.77620 0.77116 1.19363 1.19655 1.20035 1.18835 0.94986 1.11807 0.92827 1.21585 0.94560 0.95841 0.99228 1.21057 1.00810 1.06024 0.93352 1.21238 0.93542 0.95782 0.98222 1.20954 0.96406 1.07694 0.96526 1.17548 0.85271 0.92662 0.92225 1.44906 1.07089 1.64167 1.21114 0.90241 0.89640 0.92053 0.88377 0.91544 0.87403 0.88027 0.77803 0.92835 0.86211 0.86821 0.83516 0.83078 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.41 71.98 0.68 -0.47 16 2 C 0.15 2.00 3.53 45.06 0.16 2.16 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -2.15 4.11 30.69 0.13 -2.03 16 5 C -0.02 -0.58 2.77 -12.37 -0.03 -0.61 16 6 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 7 C 0.47 15.29 7.01 71.24 0.50 15.79 16 8 O -0.53 -18.34 15.58 21.95 0.34 -18.00 16 9 O -0.33 -12.74 6.79 -45.07 -0.31 -13.05 16 10 C 0.07 2.54 5.94 71.23 0.42 2.96 16 11 C 0.44 21.91 7.86 87.66 0.69 22.60 16 12 O -0.61 -34.86 16.08 15.72 0.25 -34.61 16 13 N -0.57 -29.50 5.28 -306.98 -1.62 -31.12 16 14 C -0.41 -23.49 9.68 84.04 0.81 -22.67 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.04 -2.02 5.50 84.93 0.47 -1.55 16 17 N -0.91 -50.64 13.68 21.66 0.30 -50.35 16 18 Si 1.14 48.10 29.92 68.60 2.05 50.15 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 22 C -0.18 -4.92 5.47 -19.75 -0.11 -5.03 16 23 C -0.09 -3.07 9.04 22.30 0.20 -2.86 16 24 C -0.19 -5.61 10.04 22.26 0.22 -5.39 16 25 C -0.07 -1.54 10.05 22.24 0.22 -1.31 16 26 C -0.19 -3.78 9.88 22.42 0.22 -3.56 16 27 C 0.23 4.94 6.48 38.14 0.25 5.18 16 28 N -0.74 -10.97 5.59 -317.33 -1.77 -12.75 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.51 7.81 -2.38 -0.02 1.49 16 34 H 0.11 3.69 8.13 -2.39 -0.02 3.67 16 35 H 0.10 3.60 8.13 -2.38 -0.02 3.58 16 36 H 0.39 18.24 6.73 -92.70 -0.62 17.62 16 37 H 0.26 14.03 6.78 -92.71 -0.63 13.40 16 38 H 0.12 4.70 5.14 -2.91 -0.01 4.69 16 39 H 0.11 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.41 4.07 8.60 -92.71 -0.80 3.27 16 Total: -1.00 -74.46 352.51 3.86 -70.60 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.21 Total: 35.93 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.83 Total: 3.20 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.10 Total: -94.22 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: 0.29 Total: -65.66 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Total: -74.46 3.86 -70.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884635908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.137 kcal (2) G-P(sol) polarization free energy of solvation -74.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds