Wall clock time and date at job start Tue Mar 31 2020 12:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31510 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48496 * 109.47272 * 210.00361 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21293 * 119.99810 * 119.99703 * 12 2 1 14 14 N 1.34773 * 120.00046 * 300.27575 * 12 2 1 15 15 C 1.47148 * 121.01730 * 179.44446 * 14 12 2 16 16 C 1.50507 * 110.76472 * 264.03197 * 15 14 12 17 17 C 1.52262 * 113.59959 * 295.70168 * 16 15 14 18 18 C 1.52572 * 111.15902 * 69.37023 * 17 16 15 19 19 C 1.51777 * 109.18001 * 274.77816 * 18 17 16 20 20 C 1.37943 * 120.02933 * 247.14736 * 19 18 17 21 21 C 1.38410 * 119.67554 * 183.30488 * 20 19 18 22 22 N 1.48019 * 119.92944 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99709 * 180.02562 * 22 21 20 24 24 O 1.21798 * 120.00461 * 0.02562 * 22 21 20 25 25 C 1.38297 * 120.13638 * 359.96452 * 21 20 19 26 26 C 1.38164 * 120.23297 * 359.27840 * 25 21 20 27 27 C 1.38326 * 119.52174 * 69.07067 * 19 18 17 28 28 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 29 29 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 0.97010 * 119.99929 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.30286 * 24.24167 * 15 14 12 33 33 H 1.09004 * 109.30493 * 143.63189 * 15 14 12 34 34 H 1.08999 * 108.73232 * 174.58235 * 16 15 14 35 35 H 1.09006 * 108.59404 * 56.71201 * 16 15 14 36 36 H 1.09003 * 109.13980 * 308.94196 * 17 16 15 37 37 H 1.08999 * 109.14487 * 189.80936 * 17 16 15 38 38 H 1.09004 * 109.51379 * 154.86213 * 18 17 16 39 39 H 1.08999 * 109.56245 * 34.72078 * 18 17 16 40 40 H 1.08006 * 120.16122 * 3.29846 * 20 19 18 41 41 H 1.07998 * 119.88411 * 179.29956 * 25 21 20 42 42 H 1.08004 * 120.17368 * 180.13104 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4872 -0.1400 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6967 1.1190 14 7 1.7021 -0.2535 2.4545 15 6 2.1702 -0.9368 3.6707 16 6 1.1233 -1.8884 4.1845 17 6 -0.1555 -1.1993 4.6407 18 6 -0.9213 -0.6189 3.4555 19 6 -0.3741 0.7601 3.1355 20 6 -1.1588 1.8772 3.3336 21 6 -0.6780 3.1247 2.9752 22 7 -1.5155 4.3270 3.1848 23 8 -1.0938 5.4254 2.8694 24 8 -2.6262 4.2182 3.6726 25 6 0.5832 3.2500 2.4218 26 6 1.3760 2.1336 2.2373 27 6 0.8986 0.8829 2.6078 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7089 1.1616 -3.4844 32 1 3.0783 -1.4952 3.4435 33 1 2.3893 -0.1953 4.4390 34 1 1.5384 -2.4450 5.0247 35 1 0.8754 -2.5937 3.3912 36 1 0.0986 -0.3947 5.3306 37 1 -0.7878 -1.9232 5.1548 38 1 -1.9789 -0.5417 3.7079 39 1 -0.8001 -1.2690 2.5890 40 1 -2.1435 1.7789 3.7662 41 1 0.9498 4.2240 2.1331 42 1 2.3617 2.2329 1.8070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892854876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:05 Heat of formation + Delta-G solvation = -14.947913 kcal Electronic energy + Delta-G solvation = -27869.586829 eV Core-core repulsion = 24010.759913 eV Total energy + Delta-G solvation = -3858.826916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11774 -41.01197 -38.56388 -36.55564 -36.43319 -34.48620 -33.92111 -32.31146 -30.85791 -30.49740 -28.09960 -26.05728 -25.30358 -25.05325 -23.23712 -22.57121 -21.46447 -20.76738 -19.35637 -18.78992 -18.54961 -17.42918 -17.06954 -16.59778 -16.14562 -15.47549 -15.15561 -14.81735 -14.51144 -14.21665 -14.00213 -13.94783 -13.58853 -13.29489 -13.12656 -12.70575 -12.52063 -12.08218 -11.80579 -11.61987 -11.48692 -11.29887 -11.13335 -11.05904 -11.05706 -10.90360 -10.82685 -10.81679 -10.75856 -10.43281 -10.09315 -9.63940 -9.31745 -9.00847 -8.88837 -8.60803 -8.34688 -6.15157 -4.20189 -0.11161 0.94488 1.38489 1.50042 3.04249 3.15113 3.25891 3.32550 3.35653 3.38860 4.24347 4.35383 4.42243 4.61361 4.73155 4.77873 4.80652 4.97878 5.06506 5.17986 5.25214 5.34677 5.44840 5.46938 5.62185 5.72412 5.75334 5.83128 5.85482 5.92743 5.97863 6.15387 6.17542 6.23232 6.44205 6.49095 6.64925 6.67805 6.78008 7.25772 7.53460 7.71986 7.74105 7.91764 8.15182 8.77426 8.88720 9.46120 10.91944 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.005268 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.560350 B = 5313.893217 C = 6960.620158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.507 4.507 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.528 3.472 13 O -0.520 6.520 14 N -0.591 5.591 15 C 0.114 3.886 16 C -0.141 4.141 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.091 4.091 20 C -0.043 4.043 21 C -0.054 4.054 22 N 0.036 4.964 23 O -0.166 6.166 24 O -0.171 6.171 25 C -0.040 4.040 26 C -0.117 4.117 27 C 0.230 3.770 28 H 0.095 0.905 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 0.848 15.143 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.545 4.545 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.321 3.679 13 O -0.393 6.393 14 N -0.323 5.323 15 C -0.007 4.007 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.138 4.138 22 N 0.553 4.447 23 O -0.382 6.382 24 O -0.385 6.385 25 C -0.060 4.060 26 C -0.137 4.137 27 C 0.136 3.864 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.879 -0.241 14.791 14.911 hybrid contribution -0.018 0.003 -0.874 0.874 sum -1.897 -0.238 13.917 14.047 Atomic orbital electron populations 1.21939 0.96413 0.99913 1.01562 1.18936 0.94315 0.96850 0.88760 0.92735 1.21082 1.31575 1.13053 0.88838 0.90769 1.24938 0.94934 0.94974 0.99154 1.69862 1.36644 1.22810 1.23803 0.86441 0.79475 0.79289 0.81983 1.20592 1.21166 1.19687 1.22346 0.77888 0.84254 0.83405 1.90565 1.36891 1.26317 1.85499 1.46305 1.51553 1.27048 1.07386 1.21109 0.97981 0.95851 0.85779 1.21398 0.95852 0.99054 1.01609 1.21287 0.96527 1.00148 0.97050 1.20794 0.99441 0.91506 0.99741 1.20038 0.92548 0.95833 1.00981 1.20695 1.00544 0.88772 0.96227 1.21049 0.94243 0.85212 1.13286 1.43582 1.00884 1.02545 0.97675 1.94529 1.76586 1.13228 1.53809 1.94508 1.06065 1.93077 1.44834 1.20864 0.90437 1.01112 0.93593 1.21431 1.01372 0.90082 1.00861 1.17615 0.89179 0.87157 0.92416 0.88668 0.95062 0.96240 0.92762 0.88839 0.91217 0.90819 0.91157 0.91843 0.91026 0.90268 0.89469 0.82914 0.82742 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.73 37.16 0.32 -2.77 16 2 C 0.03 0.75 1.88 -92.92 -0.17 0.58 16 3 H 0.06 1.31 6.76 -51.93 -0.35 0.96 16 4 C -0.51 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.07 2.11 6.75 -52.49 -0.35 1.76 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.53 11.02 7.03 -10.99 -0.08 10.94 16 13 O -0.52 -12.35 15.06 5.55 0.08 -12.27 16 14 N -0.59 -9.36 2.31 -114.47 -0.26 -9.62 16 15 C 0.11 1.44 5.68 -4.93 -0.03 1.42 16 16 C -0.14 -1.52 5.50 -28.35 -0.16 -1.67 16 17 C -0.11 -1.05 5.62 -27.33 -0.15 -1.21 16 18 C -0.08 -0.86 5.48 -27.57 -0.15 -1.01 16 19 C -0.09 -1.16 3.58 -104.17 -0.37 -1.53 16 20 C -0.04 -0.53 9.19 -39.63 -0.36 -0.89 16 21 C -0.05 -0.75 6.86 -79.86 -0.55 -1.30 16 22 N 0.04 0.54 4.45 34.00 0.15 0.69 16 23 O -0.17 -2.63 18.44 -29.46 -0.54 -3.17 16 24 O -0.17 -2.63 18.45 -29.46 -0.54 -3.17 16 25 C -0.04 -0.53 9.54 -39.59 -0.38 -0.91 16 26 C -0.12 -1.62 8.50 -39.36 -0.33 -1.96 16 27 C 0.23 3.29 2.82 -83.84 -0.24 3.06 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.36 4.28 -51.93 -0.22 0.14 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.09 1.29 7.34 -51.93 -0.38 0.91 16 33 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 36 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.72 7.93 -51.93 -0.41 0.30 16 39 H 0.09 1.17 7.83 -51.93 -0.41 0.76 16 40 H 0.15 1.60 7.55 -52.48 -0.40 1.21 16 41 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 42 H 0.15 2.04 7.76 -52.48 -0.41 1.63 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -30.04 341.49 -8.69 -38.72 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.29 Total: 0.85 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.03 Total: -9.68 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.51 Total: -32.54 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.00 Total: -18.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.04 -8.69 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892854876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.775 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds