Wall clock time and date at job start Tue Mar 31 2020 12:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31510 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48496 * 109.47272 * 210.00361 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21293 * 119.99810 * 119.99703 * 12 2 1 14 14 N 1.34773 * 120.00046 * 300.27575 * 12 2 1 15 15 C 1.47148 * 121.01730 * 179.44446 * 14 12 2 16 16 C 1.50507 * 110.76472 * 264.03197 * 15 14 12 17 17 C 1.52262 * 113.59959 * 295.70168 * 16 15 14 18 18 C 1.52572 * 111.15902 * 69.37023 * 17 16 15 19 19 C 1.51777 * 109.18001 * 274.77816 * 18 17 16 20 20 C 1.37943 * 120.02933 * 247.14736 * 19 18 17 21 21 C 1.38410 * 119.67554 * 183.30488 * 20 19 18 22 22 N 1.48019 * 119.92944 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99709 * 180.02562 * 22 21 20 24 24 O 1.21798 * 120.00461 * 0.02562 * 22 21 20 25 25 C 1.38297 * 120.13638 * 359.96452 * 21 20 19 26 26 C 1.38164 * 120.23297 * 359.27840 * 25 21 20 27 27 C 1.38326 * 119.52174 * 69.07067 * 19 18 17 28 28 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 29 29 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 0.97010 * 119.99929 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.30286 * 24.24167 * 15 14 12 33 33 H 1.09004 * 109.30493 * 143.63189 * 15 14 12 34 34 H 1.08999 * 108.73232 * 174.58235 * 16 15 14 35 35 H 1.09006 * 108.59404 * 56.71201 * 16 15 14 36 36 H 1.09003 * 109.13980 * 308.94196 * 17 16 15 37 37 H 1.08999 * 109.14487 * 189.80936 * 17 16 15 38 38 H 1.09004 * 109.51379 * 154.86213 * 18 17 16 39 39 H 1.08999 * 109.56245 * 34.72078 * 18 17 16 40 40 H 1.08006 * 120.16122 * 3.29846 * 20 19 18 41 41 H 1.07998 * 119.88411 * 179.29956 * 25 21 20 42 42 H 1.08004 * 120.17368 * 180.13104 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4872 -0.1400 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6967 1.1190 14 7 1.7021 -0.2535 2.4545 15 6 2.1702 -0.9368 3.6707 16 6 1.1233 -1.8884 4.1845 17 6 -0.1555 -1.1993 4.6407 18 6 -0.9213 -0.6189 3.4555 19 6 -0.3741 0.7601 3.1355 20 6 -1.1588 1.8772 3.3336 21 6 -0.6780 3.1247 2.9752 22 7 -1.5155 4.3270 3.1848 23 8 -1.0938 5.4254 2.8694 24 8 -2.6262 4.2182 3.6726 25 6 0.5832 3.2500 2.4218 26 6 1.3760 2.1336 2.2373 27 6 0.8986 0.8829 2.6078 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7089 1.1616 -3.4844 32 1 3.0783 -1.4952 3.4435 33 1 2.3893 -0.1953 4.4390 34 1 1.5384 -2.4450 5.0247 35 1 0.8754 -2.5937 3.3912 36 1 0.0986 -0.3947 5.3306 37 1 -0.7878 -1.9232 5.1548 38 1 -1.9789 -0.5417 3.7079 39 1 -0.8001 -1.2690 2.5890 40 1 -2.1435 1.7789 3.7662 41 1 0.9498 4.2240 2.1331 42 1 2.3617 2.2329 1.8070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892854876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:04 Heat of formation + Delta-G solvation = -29.659239 kcal Electronic energy + Delta-G solvation = -27870.224760 eV Core-core repulsion = 24010.759913 eV Total energy + Delta-G solvation = -3859.464847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.27908 -42.24945 -39.97557 -37.70516 -37.60403 -35.99336 -35.49368 -33.47023 -32.30681 -31.95826 -29.18039 -27.30829 -27.25133 -26.15401 -24.56455 -23.77751 -22.85920 -21.75952 -20.65080 -19.90779 -19.67203 -18.60904 -18.57193 -18.25837 -17.61411 -16.89296 -16.57893 -16.11816 -15.90197 -15.43887 -15.10545 -15.09012 -14.88865 -14.58584 -14.23669 -14.20516 -13.78603 -13.42871 -13.12915 -13.02123 -12.80310 -12.76595 -12.68041 -12.59661 -12.34582 -12.28520 -12.26565 -12.09225 -12.02753 -11.72246 -11.64270 -11.15546 -10.94662 -10.64200 -10.37651 -10.16823 -9.73371 -8.20264 -6.31682 -1.26910 -0.09516 0.22028 0.36521 1.37580 1.39281 1.49739 1.62462 1.78776 2.15458 2.40067 3.09745 3.25664 3.41505 3.56542 3.65671 3.81287 3.94106 4.00570 4.08242 4.21525 4.33160 4.45413 4.50610 4.58314 4.63239 4.70325 4.77914 4.81307 4.85955 4.88473 4.92151 5.02875 5.09485 5.19796 5.20834 5.31021 5.36918 5.39298 5.52567 5.65758 5.82063 6.08485 6.37968 6.53282 6.76202 7.17279 7.37887 8.84900 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.005268 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.560350 B = 5313.893217 C = 6960.620158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.532 3.468 13 O -0.559 6.559 14 N -0.578 5.578 15 C 0.108 3.892 16 C -0.137 4.137 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.085 4.085 20 C -0.032 4.032 21 C -0.060 4.060 22 N 0.036 4.964 23 O -0.189 6.189 24 O -0.165 6.165 25 C -0.039 4.039 26 C -0.123 4.123 27 C 0.208 3.792 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 0.842 16.981 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.324 3.676 13 O -0.436 6.436 14 N -0.308 5.308 15 C -0.012 4.012 16 C -0.175 4.175 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.051 4.051 21 C -0.143 4.143 22 N 0.551 4.449 23 O -0.399 6.399 24 O -0.382 6.382 25 C -0.058 4.058 26 C -0.144 4.144 27 C 0.116 3.884 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.184 0.816 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.065 -0.187 16.656 16.936 hybrid contribution 0.326 0.038 -1.368 1.407 sum -2.738 -0.149 15.288 15.532 Atomic orbital electron populations 1.21708 0.95487 0.99232 1.01639 1.18800 0.94982 0.96113 0.89262 0.93686 1.21248 1.31869 1.12876 0.90900 0.93096 1.25559 0.95074 0.95627 1.01382 1.69948 1.36987 1.23423 1.24363 0.85624 0.78739 0.78540 0.79201 1.20075 1.20147 1.20119 1.21708 0.77679 0.83637 0.84547 1.90539 1.38766 1.27866 1.86416 1.45995 1.50777 1.27222 1.06834 1.21408 0.98155 0.96818 0.84835 1.21385 0.96290 0.98254 1.01610 1.21288 0.95669 1.00984 0.96442 1.20909 1.01457 0.89821 0.99584 1.20187 0.91586 0.96953 1.00068 1.20951 1.01290 0.87734 0.95120 1.21207 0.94248 0.85179 1.13684 1.43747 1.00920 1.02789 0.97431 1.94537 1.76795 1.13803 1.54777 1.94492 1.06226 1.93112 1.44382 1.20960 0.90302 1.01400 0.93178 1.21457 1.01611 0.90297 1.01000 1.17832 0.90041 0.86594 0.93975 0.91349 0.95979 0.93258 0.92599 0.90428 0.88271 0.88058 0.93863 0.90358 0.88582 0.87470 0.92032 0.80383 0.81646 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.73 71.98 0.63 -4.85 16 2 C 0.03 1.41 1.88 -12.29 -0.02 1.39 16 3 H 0.05 2.23 6.76 -2.39 -0.02 2.21 16 4 C -0.53 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -49.91 11.32 21.45 0.24 -49.67 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.53 22.75 7.03 87.66 0.62 23.37 16 13 O -0.56 -27.62 15.06 -3.07 -0.05 -27.67 16 14 N -0.58 -18.07 2.31 -634.45 -1.47 -19.54 16 15 C 0.11 2.59 5.68 85.45 0.49 3.07 16 16 C -0.14 -2.65 5.50 29.54 0.16 -2.49 16 17 C -0.11 -1.59 5.62 30.21 0.17 -1.42 16 18 C -0.08 -1.54 5.48 30.05 0.16 -1.38 16 19 C -0.09 -1.94 3.58 -19.57 -0.07 -2.01 16 20 C -0.03 -0.68 9.19 22.24 0.20 -0.47 16 21 C -0.06 -1.51 6.86 36.43 0.25 -1.26 16 22 N 0.04 1.01 4.45 -46.33 -0.21 0.80 16 23 O -0.19 -5.75 18.44 18.88 0.35 -5.40 16 24 O -0.17 -4.68 18.45 18.89 0.35 -4.33 16 25 C -0.04 -0.97 9.54 22.27 0.21 -0.75 16 26 C -0.12 -3.31 8.50 22.41 0.19 -3.12 16 27 C 0.21 5.69 2.82 38.02 0.11 5.80 16 28 H 0.07 3.44 6.07 -2.38 -0.01 3.42 16 29 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.05 1.84 4.28 -2.38 -0.01 1.83 16 31 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 32 H 0.08 2.13 7.34 -2.39 -0.02 2.11 16 33 H 0.10 1.81 8.06 -2.38 -0.02 1.79 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.09 7.97 -2.38 -0.02 1.07 16 36 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.47 7.93 -2.39 -0.02 1.45 16 39 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 40 H 0.18 2.94 7.55 -2.91 -0.02 2.92 16 41 H 0.17 3.69 7.60 -2.91 -0.02 3.67 16 42 H 0.15 4.03 7.76 -2.91 -0.02 4.01 16 Total: -1.00 -66.51 341.49 6.06 -60.45 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.05 Total: 11.25 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 3.76 Total: -11.77 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.43 Total: -68.41 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: 0.65 Total: -37.40 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.51 6.06 -60.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892854876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.792 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds